TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0091b.8
         (200 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7798 weakly similar to UP|Q84LB4 (Q84LB4) Cold acclimation pro...   395  e-111
AI967693                                                              125  7e-57
TC14024                                                                56  4e-09
TC12576 homologue to GB|AAM55302.1|28624758|AY115841 auxin influ...    31  0.13
AV780707                                                               30  0.22
BP054100                                                               28  0.82
TC12805                                                                27  2.4
TC19672 weakly similar to UP|Q8RW26 (Q8RW26) Plasma membrane H+-...    27  2.4
BP055717                                                               27  2.4
TC8938 similar to UP|Q9LHM7 (Q9LHM7) Dbj|BAA17774.1, partial (12%)     27  2.4
TC13558 similar to GB|AAD33770.1|4928919|AF138744 zinc finger pr...    26  5.3
AV425084                                                               26  5.3
BG662307                                                               25  7.0
BP067169                                                               25  7.0
TC19651 similar to UP|Q7QEB6 (Q7QEB6) AgCP7318 (Fragment), parti...    25  9.1
TC18472                                                                25  9.1
BP072713                                                               25  9.1

>TC7798 weakly similar to UP|Q84LB4 (Q84LB4) Cold acclimation protein
           COR413-PM1, partial (86%)
          Length = 888

 Score =  395 bits (1016), Expect = e-111
 Identities = 200/200 (100%), Positives = 200/200 (100%)
 Frame = +2

Query: 1   MWKGMNFREAEAADLINSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAIYLL 60
           MWKGMNFREAEAADLINSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAIYLL
Sbjct: 53  MWKGMNFREAEAADLINSDFRDLSLAATKLANHAVNLGVGFGFGASFFGLIAAIAAIYLL 232

Query: 61  VLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLE 120
           VLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLE
Sbjct: 233 VLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLE 412

Query: 121 LPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSN 180
           LPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSN
Sbjct: 413 LPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSN 592

Query: 181 SIGIIILLVYPIWAAVVIIF 200
           SIGIIILLVYPIWAAVVIIF
Sbjct: 593 SIGIIILLVYPIWAAVVIIF 652


>AI967693 
          Length = 465

 Score =  125 bits (315), Expect(2) = 7e-57
 Identities = 64/74 (86%), Positives = 65/74 (87%)
 Frame = +1

Query: 37  LGVGFGFGASFFGLIAAIAAIYLLVLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEI 96
           LG   G GASFFGLIAAIAAIYLLVLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEI
Sbjct: 100 LGFDSGEGASFFGLIAAIAAIYLLVLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEI 279

Query: 97  GKWIALVAIVLRIF 110
           GKWIALV   +  F
Sbjct: 280 GKWIALVCYCIAHF 321



 Score =  110 bits (275), Expect(2) = 7e-57
 Identities = 54/54 (100%), Positives = 54/54 (100%)
 Frame = +2

Query: 104 AIVLRIFIPKHFPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYL 157
           AIVLRIFIPKHFPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYL
Sbjct: 302 AIVLRIFIPKHFPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYL 463


>TC14024 
          Length = 560

 Score = 56.2 bits (134), Expect = 4e-09
 Identities = 36/113 (31%), Positives = 57/113 (49%)
 Frame = +1

Query: 77  IPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLELPAALIILIVVAPGLI 136
           +P      P+      +G  G W A +A+++R+F   + P  LELP   ++L++VAP   
Sbjct: 1   VPLFALQAPAGFIAWIKGSYGMWAAFLALLVRLFF--YIPGELELPFLALLLVIVAP-YE 171

Query: 137 ANTFRDNIVGVVVCLVIACYLLQEHIRASGGFRNSFTKANGVSNSIGIIILLV 189
           A  FRD   G  + L+IA YL  +H   +   + SF + + V+    I I LV
Sbjct: 172 AMKFRDTKEGAFISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLV 327


>TC12576 homologue to GB|AAM55302.1|28624758|AY115841 auxin influx carrier
           protein {Medicago truncatula;} , partial (36%)
          Length = 832

 Score = 31.2 bits (69), Expect = 0.13
 Identities = 32/107 (29%), Positives = 45/107 (41%), Gaps = 19/107 (17%)
 Frame = +3

Query: 75  LLIPYIFFSL---PSIIFNVFRGEIGKWIALVAIVL-----------RIFIPKHFPDWLE 120
           L +PY F  L     IIF +F G +G W A +  +L            +    H   W E
Sbjct: 486 LTLPYSFSQLGMLSGIIFQIFYGLLGSWTAYLISILYIEYRTRKEKENVSFKNHVIQWFE 665

Query: 121 LPAALIILIVVAPGLIAN-TFRDNIVGVVVCLVIAC----YLLQEHI 162
           +   L+     A GL  N TF   + G V+ L IAC    Y + +H+
Sbjct: 666 VLEGLLGPYWKAIGLAFNCTFL--LFGSVIQL-IACASNIYYINDHL 797


>AV780707 
          Length = 429

 Score = 30.4 bits (67), Expect = 0.22
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +1

Query: 36  NLGVGFGFGASFFGLIAAIAAIY---LLVLDRTNWKTNILTGL--LIPYIFFSLP 85
           ++G+GFGFG S  G+       Y     V D  + K N LT +   +P+ ++SLP
Sbjct: 160 DVGLGFGFGISSLGMGFTFLGSYPHKYAVGDELSVKVNSLTSIDTEMPFSYYSLP 324


>BP054100 
          Length = 464

 Score = 28.5 bits (62), Expect = 0.82
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 41  FGFGASFFGLI---AAIAAIYLLVLDRTNWKTNILTGLLIPYIFFSLPSI 87
           FGF   FF LI        I + + D+      ++TG+L+P  FFS+P +
Sbjct: 408 FGFSGFFFTLI**RHISYPIIICLFDQCTLIAQVITGMLVP--FFSVPLV 265


>TC12805 
          Length = 702

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 18/67 (26%), Positives = 31/67 (45%)
 Frame = +2

Query: 101 ALVAIVLRIFIPKHFPDWLELPAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQE 160
           A+ A+VL +  P+            ++ +++  GL     R   + +V+ L +   L QE
Sbjct: 371 AMAAVVLHLV*PQ------------VLHLLLCRGLSCQIHRPMHINLVLELKVPISLKQE 514

Query: 161 HIRASGG 167
           H R SGG
Sbjct: 515 HFRRSGG 535


>TC19672 weakly similar to UP|Q8RW26 (Q8RW26) Plasma membrane H+-ATPase  ,
           partial (5%)
          Length = 597

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 58  YLLVLDRTNWKTNILTGLLIPYIFFSLPSIIFNVFR 93
           +L+VLD T   T   TG  IPY FFSL + IF + R
Sbjct: 296 FLVVLDSTVN*TPWWTG--IPYAFFSLCTTIFVLIR 397


>BP055717 
          Length = 339

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 98  KWIALVAIVLRIFIPKHFPDWLELPAAL 125
           KW  +    ++IF+P  FP    LP AL
Sbjct: 233 KWFPMCLTYIKIFLPIFFPQGRALPLAL 316


>TC8938 similar to UP|Q9LHM7 (Q9LHM7) Dbj|BAA17774.1, partial (12%)
          Length = 622

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 10/26 (38%), Positives = 19/26 (72%)
 Frame = +3

Query: 102 LVAIVLRIFIPKHFPDWLELPAALII 127
           +V+I+  I++P+ F  WL +PA +I+
Sbjct: 123 IVSILAAIYMPQAFRRWLMIPAHMIL 200


>TC13558 similar to GB|AAD33770.1|4928919|AF138744 zinc finger protein 2
           {Arabidopsis thaliana;}, partial (8%)
          Length = 553

 Score = 25.8 bits (55), Expect = 5.3
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 70  NILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVL 107
           +I + L+  Y++F   S  FN+FRG+   +   +++++
Sbjct: 96  SIFSHLVCIYLWFLFLSFFFNIFRGKFNPFQFSLSLII 209


>AV425084 
          Length = 252

 Score = 25.8 bits (55), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (65%)
 Frame = +3

Query: 37  LGVGFGFGASFFGLIAAIAAIYLL 60
           +GVG G G+SFF ++   AA  L+
Sbjct: 168 VGVGVGAGSSFFLILVGFAAFILV 239


>BG662307 
          Length = 373

 Score = 25.4 bits (54), Expect = 7.0
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 56  AIYLLVLDRTNWKTNILT---GLLIPYIFFSLPSIIFNVFRGEIGKWI 100
           +I+ +VLD+T+W   +      L + +  F +  + FN+F     K++
Sbjct: 223 SIFCIVLDKTHWFCEVWFSQ*NLALSFFVFPMVVVTFNLFIEYYNKYL 366


>BP067169 
          Length = 511

 Score = 25.4 bits (54), Expect = 7.0
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = -2

Query: 66  NWKTNILTGLLIPYIFF 82
           +WKTN+ +G +IP I F
Sbjct: 234 SWKTNVSSGKVIPRIMF 184


>TC19651 similar to UP|Q7QEB6 (Q7QEB6) AgCP7318 (Fragment), partial (8%)
          Length = 635

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (50%)
 Frame = -2

Query: 4   GMNFREAEAADLINSDFRDLSLAATKLANHAVNLGVGFG 42
           G +  E+++    + DFRDLSL A   A      G GFG
Sbjct: 580 GFSLPESDSPSEDSIDFRDLSLLAKSSAG-----GAGFG 479


>TC18472 
          Length = 642

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -1

Query: 69  TNILTGLLIPYIFFSLPSIIFNV 91
           TNILT  ++PYI  S  S+  N+
Sbjct: 252 TNILTNSMLPYILLSRNSLPHNL 184


>BP072713 
          Length = 403

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 42  GFGASFFGLIAAIAAIYLLVLDRTNWK----TNILTGLLIP 78
           G   SFF L+A    +++   +  NWK    TN LT +++P
Sbjct: 329 GKAKSFFVLVAFPPLLFMCSNNSCNWKNLNHTNSLTIVIVP 207


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.331    0.147    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,574,055
Number of Sequences: 28460
Number of extensions: 48588
Number of successful extensions: 364
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of query: 200
length of database: 4,897,600
effective HSP length: 86
effective length of query: 114
effective length of database: 2,450,040
effective search space: 279304560
effective search space used: 279304560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)