TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0091b.10
         (353 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP075943                                                               39  0.001
TC8124 weakly similar to UP|IF5Z_ARATH (Q9S825) Probable eukaryo...    32  0.21
BP063282                                                               32  0.21
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela...    31  0.27
TC12540                                                                29  1.4
TC9622 weakly similar to UP|AAQ54501 (AAQ54501) Glucosyltransfer...    29  1.4
AV780009                                                               28  1.8
AV773315                                                               28  3.0

>BP075943 
          Length = 547

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
 Frame = -3

Query: 131 YLSAIKALLYLASHTRLDISFAINLLARYSSSPTQRHWNGKQVF-RYLKGALDMSLFFPF 189
           Y   +  LLYL + TR DI+FA+N L+++ S+PT  H      F +YL G+    LF+P 
Sbjct: 224 YRRIVGRLLYLNT-TRPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPA 48

Query: 190 MSKL----NLIGYAD 200
            S      +LIG  D
Sbjct: 47  SSSTL*LPSLIGGPD 3


>TC8124 weakly similar to UP|IF5Z_ARATH (Q9S825) Probable eukaryotic
           translation initiation factor 5-2 (eIF-5 2), partial
           (5%)
          Length = 884

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 99  LCTLLVLRSLNVNKDPFRP*E 119
           LCT +V+RSLNVN+ PF P E
Sbjct: 718 LCTSIVVRSLNVNQGPFIPQE 780


>BP063282 
          Length = 519

 Score = 31.6 bits (70), Expect = 0.21
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 99  LCTLLVLRSLNVNKDPFRP*E 119
           LCT +V+RSLNVN+ PF P E
Sbjct: 177 LCTSIVVRSLNVNQGPFIPQE 115


>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
           polyprotein from transposon TNT 1-94 [Contains: Protease
           ; Reverse transcriptase ; Endonuclease] , partial (9%)
          Length = 747

 Score = 31.2 bits (69), Expect = 0.27
 Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
 Frame = +2

Query: 76  VFMYQRTYIAKVLKGFYMDKSCPLCTLLVLR-SLNVNKDPFRP*EKNEELLDPEVPYLSA 134
           +++ Q+ Y+ KVL+ F M    P+ T L +   L+ +  P    E+ E      VPY SA
Sbjct: 254 IWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSMIPSSEAERMEM---SRVPYASA 424

Query: 135 IKALLY 140
           + +L+Y
Sbjct: 425 VGSLMY 442


>TC12540 
          Length = 538

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 130 PYLSAIKALLYLASHTRLDISFAINLLARYSSSPTQRHWNGKQVF 174
           PY   I    Y  SH+ LD+S  ++  A  +S     HWN  Q++
Sbjct: 442 PYFLYIFFFFYHISHSLLDVSSRVHSFANLASV*VM-HWNHNQIY 311


>TC9622 weakly similar to UP|AAQ54501 (AAQ54501) Glucosyltransferase
           (Fragment), partial (84%)
          Length = 584

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -2

Query: 72  LKDEVFMYQRTYIAKVLKGFYMDKSCPLCTLLVLRSLNVNK 112
           L + V +Y+R +  ++LKG+ M  S PL   +++ + N NK
Sbjct: 562 LLNGVIIYRR*FYIELLKGYMMKNSMPLIA*ILIDNNNNNK 440


>AV780009 
          Length = 529

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 14/32 (43%), Positives = 19/32 (58%)
 Frame = -1

Query: 172 QVFRYLKGALDMSLFFPFMSKLNLIGYADAGY 203
           +V RY+KGA    LFF   S L L  Y+D+ +
Sbjct: 517 RVLRYVKGAPAQGLFFSADSPLKLQAYSDSDW 422


>AV773315 
          Length = 519

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 281 LHALLNQKKDTSWEMDKANITG 302
           LH  +N  K T W++ K NITG
Sbjct: 12  LHT*MNHHKVTKWKISKMNITG 77


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.357    0.160    0.555 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,661,958
Number of Sequences: 28460
Number of extensions: 69891
Number of successful extensions: 774
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of query: 353
length of database: 4,897,600
effective HSP length: 91
effective length of query: 262
effective length of database: 2,307,740
effective search space: 604627880
effective search space used: 604627880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 56 (26.2 bits)