BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0090b.2
(120 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP043633 51 6e-08
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 51 6e-08
BP030058 50 1e-07
BP033767 45 3e-06
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 45 3e-06
AV410275 45 3e-06
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 45 4e-06
TC15704 similar to UP|O22265 (O22265) Expressed protein (At2g474... 45 4e-06
BP054137 44 7e-06
AV427919 44 1e-05
CN825556 43 1e-05
TC16586 weakly similar to UP|Q93VQ9 (Q93VQ9) At1g31020/F17F8_6 (... 43 1e-05
TC7921 homologue to UP|Q8LHP9 (Q8LHP9) OJ1008_F01.11 protein, pa... 42 2e-05
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 42 3e-05
TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%) 42 4e-05
AW719741 41 5e-05
AV427333 41 5e-05
BI418940 41 5e-05
CN825698 41 5e-05
AU251550 40 1e-04
>BP043633
Length = 542
Score = 50.8 bits (120), Expect = 6e-08
Identities = 31/66 (46%), Positives = 33/66 (49%), Gaps = 8/66 (12%)
Frame = -1
Query: 63 DGGGGNDGGGSGGSSGGGARAWWGRRRQWW--RWRQWCDDGGGSGSDDGG------GSGG 114
DGGGG GGG G GGG W G WW W ++ GG G G GSGG
Sbjct: 431 DGGGG--GGGGGPHCGGGEGVWDG----WWY*NWGEYHGA*GGCGGGIWGKWWWWLGSGG 270
Query: 115 GGGGGG 120
GGGGGG
Sbjct: 269 GGGGGG 252
Score = 31.6 bits (70), Expect = 0.038
Identities = 22/56 (39%), Positives = 23/56 (40%), Gaps = 4/56 (7%)
Frame = -1
Query: 66 GGNDG----GGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGG 117
GGN G GG GG GGG W + DGGG G G GGG G
Sbjct: 518 GGN*G*GG*GGRGGGGGGG---------NCLGW*E*GFDGGGGGGGGGPHCGGGEG 378
Score = 26.6 bits (57), Expect = 1.2
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 101 GGGSGSDDGGGSGGGGGGG 119
GG G GG GGGGGGG
Sbjct: 518 GGN*G*GG*GGRGGGGGGG 462
Score = 25.0 bits (53), Expect = 3.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = -1
Query: 22 GGDSGGGGWCWWRR-----WRRSV-VVVAVTVVVIVVEAVVVEAVVVDG--GGGN 68
GG GGGG C R W S+ V + +V++++ V +E + +G GGN
Sbjct: 275 GGGGGGGGGCGGRM*P*GCWYESMGVSELIWIVMMLMRCVSMEKLGSEGLRKGGN 111
Score = 24.6 bits (52), Expect = 4.6
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = -1
Query: 102 GGSGSDDGGGSGGGGGGGG 120
GG+ G G GGGGGGG
Sbjct: 518 GGN*G*GG*GGRGGGGGGG 462
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 50.8 bits (120), Expect = 6e-08
Identities = 30/60 (50%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 64 GGGGNDG-GGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGG---GSGGGGGGG 119
GGGG+ G GG GG GGG +G RR+ GG G D GG GSGGGGGGG
Sbjct: 400 GGGGSRGYGGGGGGYGGGGGGGYGGRRE-----------GGYGGDGGGSRYGSGGGGGGG 546
Score = 49.7 bits (117), Expect = 1e-07
Identities = 30/65 (46%), Positives = 30/65 (46%)
Frame = +1
Query: 56 VVEAVVVDGGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGG 115
V EA GGGG G G GG GGG R G GGGS GGG G G
Sbjct: 301 VNEAQARGGGGGGGGRGGGGYGGGGGRREGGY-----------GGGGGSRGYGGGGGGYG 447
Query: 116 GGGGG 120
GGGGG
Sbjct: 448 GGGGG 462
Score = 49.3 bits (116), Expect = 2e-07
Identities = 29/66 (43%), Positives = 31/66 (46%)
Frame = +1
Query: 55 VVVEAVVVDGGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGG 114
+ V GGGG GG GG GGG GRR + GGG GS GG GG
Sbjct: 295 ITVNEAQARGGGGGGGGRGGGGYGGGG----GRREGGY--------GGGGGSRGYGGGGG 438
Query: 115 GGGGGG 120
G GGGG
Sbjct: 439 GYGGGG 456
Score = 29.3 bits (64), Expect = 0.19
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 63 DGGGGNDGGGSG-GSSGGGARAWW 85
+GG G DGGGS GS GGG W
Sbjct: 481 EGGYGGDGGGSRYGSGGGGGGGNW 552
Score = 24.6 bits (52), Expect = 4.6
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +1
Query: 100 DGGGSGSDDGGGSGGGGGGGG 120
DG ++ GGGGGGGG
Sbjct: 283 DGRNITVNEAQARGGGGGGGG 345
>BP030058
Length = 455
Score = 50.1 bits (118), Expect = 1e-07
Identities = 26/57 (45%), Positives = 26/57 (45%)
Frame = +1
Query: 64 GGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
GGGG GGG GG GGG G G GS GGG G GGGGGG
Sbjct: 298 GGGGEGGGGGGGDGGGGG-------------------GDGHGSGGGGGEGDGGGGGG 411
Score = 37.0 bits (84), Expect = 9e-04
Identities = 20/51 (39%), Positives = 22/51 (42%)
Frame = +1
Query: 70 GGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
GGG G G ++G GGG G GGG GGGGGG G
Sbjct: 250 GGGDKGLQFCGQEGYFG--------------GGGEGGGGGGGDGGGGGGDG 360
Score = 27.3 bits (59), Expect = 0.71
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +1
Query: 21 GGGDSGGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGSSGGG 80
GGGD GGGG DG G GGG G GGG
Sbjct: 325 GGGDGGGGGG--------------------------------DGHGSGGGGGEGDGGGGG 408
Score = 26.2 bits (56), Expect(2) = 0.059
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 64 GGGGNDGGGSGGS 76
GGG DGGG GGS
Sbjct: 376 GGGEGDGGGGGGS 414
Score = 23.5 bits (49), Expect(2) = 0.059
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +3
Query: 30 WCWWRRWR 37
W WW RWR
Sbjct: 318 WRWWGRWR 341
>BP033767
Length = 541
Score = 45.4 bits (106), Expect = 3e-06
Identities = 40/120 (33%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Frame = -3
Query: 4 AMMVAAAVVVAMLAVVEGG----GDSGGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEA 59
+++V V A AV EGG GD G G E
Sbjct: 521 SLLVGGVVFAAASAVDEGGDRDDGDGAGDGG----------------------NGDAEEL 408
Query: 60 VVVDGGGG---NDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGG 116
V G GG ++GG GG G G GRRR WWRW C + G GGG GGGG
Sbjct: 407 VGGFGFGGLREDEGGDVGGEGGEGG----GRRRWWWRWV--CGEERCGGILGGGGCGGGG 246
Score = 31.2 bits (69), Expect = 0.049
Identities = 24/79 (30%), Positives = 26/79 (32%)
Frame = -3
Query: 19 VEGGGDSGGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGSSG 78
V G G GGG WW RW + GG GGG G G
Sbjct: 359 VGGEGGEGGGRRRWWWRW----------------------VCGEERCGGILGGG--GCGG 252
Query: 79 GGARAWWGRRRQWWRWRQW 97
GG +W R W W W
Sbjct: 251 GGKWVFWVWR*GRW*WWWW 195
Score = 26.2 bits (56), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 18 VVEGGGDSGGGGWCWWRRWR 37
++ GGG GGG W +W WR
Sbjct: 278 ILGGGGCGGGGKWVFW-VWR 222
Score = 25.8 bits (55), Expect = 2.1
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Frame = -1
Query: 20 EGGGDSGGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGSSGG 79
EG G GG G+ ++ V V VVV V E G GG G GG
Sbjct: 334 EGEGGGGGDGYVG----KKGVEAFWVVVVVGVEE----------NGYFGFGGEGDGDGGG 197
Query: 80 GARAWWGRR----RQWWR 93
G G R + WWR
Sbjct: 196 GFGG*EGGREPCVKGWWR 143
Score = 24.6 bits (52), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 99 DDGGGSGSDDGGGSGGGGGG 118
D+GG DDG G+G GG G
Sbjct: 476 DEGGDR--DDGDGAGDGGNG 423
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 45.4 bits (106), Expect = 3e-06
Identities = 25/57 (43%), Positives = 26/57 (44%)
Frame = +3
Query: 64 GGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
GGGG GGG GG GG + G GGG G GG GG GGGGG
Sbjct: 336 GGGGYGGGGRGGGGYGGGGGYGGSGGY----------GGGGGYGGGGRGGGRGGGGG 476
Score = 45.1 bits (105), Expect = 3e-06
Identities = 24/55 (43%), Positives = 25/55 (44%)
Frame = +3
Query: 64 GGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGG 118
GGGG GGG GG G G +G GG G GGG GGGGGG
Sbjct: 351 GGGGRGGGGYGGGGGYGGSGGYG------------GGGGYGGGGRGGGRGGGGGG 479
Score = 42.4 bits (98), Expect = 2e-05
Identities = 32/100 (32%), Positives = 34/100 (34%)
Frame = +3
Query: 21 GGGDSGGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGSSGGG 80
GGG GGGG+ GGGG GGG GG GG
Sbjct: 291 GGGGRGGGGYGGGGY----------------------------GGGGYGGGGRGGGGYGG 386
Query: 81 ARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
+ G GG G GGG GGG GGGG
Sbjct: 387 GGGYGG-----------SGGYGGGGGYGGGGRGGGRGGGG 473
Score = 39.7 bits (91), Expect = 1e-04
Identities = 23/57 (40%), Positives = 23/57 (40%)
Frame = +3
Query: 64 GGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
GGG GG GG GGG G G G GGG GGGG GGG
Sbjct: 279 GGGAGGGGRGGGGYGGG--------------------GYGGGGYGGGGRGGGGYGGG 389
Score = 34.7 bits (78), Expect = 0.004
Identities = 25/65 (38%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Frame = +3
Query: 58 EAVVVDGGGGN--DGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGG 115
+A+ V G G G GG +GGG R GGG G GGG GGG
Sbjct: 225 KAIEVTGPNGQAVQGTRRGGGAGGGGRG-----------------GGGYG---GGGYGGG 344
Query: 116 GGGGG 120
G GGG
Sbjct: 345 GYGGG 359
>AV410275
Length = 431
Score = 45.1 bits (105), Expect = 3e-06
Identities = 27/65 (41%), Positives = 36/65 (54%), Gaps = 3/65 (4%)
Frame = -1
Query: 59 AVVVDGGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQ-WCDDGG--GSGSDDGGGSGGG 115
A ++ GGGG + G GGS ++ +++ R+ W GG G G DGGG GGG
Sbjct: 233 AGILGGGGGWE*GRRGGSDCLSLGVFFNSN*GYFKQREVWRC*GGYDGFGDHDGGGGGGG 54
Query: 116 GGGGG 120
GGGGG
Sbjct: 53 GGGGG 39
Score = 28.5 bits (62), Expect = 0.32
Identities = 13/21 (61%), Positives = 14/21 (65%), Gaps = 1/21 (4%)
Frame = -1
Query: 63 DGGGGNDGGGSGG-SSGGGAR 82
DG G +DGGG GG GGG R
Sbjct: 95 DGFGDHDGGGGGGGGGGGGGR 33
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 44.7 bits (104), Expect = 4e-06
Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = -1
Query: 64 GGGGNDGGGSGGSSGGGARAWWGRRRQWW--------RWRQWCDDGGGSGSDDGGGSGGG 115
G GG GGG G GGG R G +Q + R R GG G GGG G G
Sbjct: 314 GRGGGYGGGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGYG 135
Query: 116 GGGG 119
GGGG
Sbjct: 134 GGGG 123
Score = 40.4 bits (93), Expect = 8e-05
Identities = 27/67 (40%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Frame = -1
Query: 64 GGGGNDGGGSGGSSG--------GGARAWWGRRRQW--WRWRQWCDDGGGSGSDDGGGSG 113
GGGG G G GG G GG + GR R + + GGG G GGG G
Sbjct: 296 GGGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGYGGGGGRG 117
Query: 114 GGGGGGG 120
GGG G G
Sbjct: 116 GGGMGSG 96
Score = 30.4 bits (67), Expect = 0.084
Identities = 20/51 (39%), Positives = 22/51 (42%)
Frame = -1
Query: 70 GGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
GGG G GG R + G + GG G GGG G G GGGG
Sbjct: 371 GGGGPGPQGG--RGYGGPPQ------------GGRGGGYGGGGGPGYGGGG 261
Score = 24.3 bits (51), Expect = 6.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 64 GGGGNDGGGSGGSSGGGAR 82
GGG GGG GG G R
Sbjct: 149 GGGYGGGGGRGGGGMGSGR 93
Score = 24.3 bits (51), Expect = 6.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 64 GGGGNDGGGSGGSSGG 79
GGGG GGG GS G
Sbjct: 137 GGGGGRGGGGMGSGRG 90
>TC15704 similar to UP|O22265 (O22265) Expressed protein
(At2g47450/T30B22.25), partial (25%)
Length = 664
Score = 44.7 bits (104), Expect = 4e-06
Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 60 VVVDGGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDD-GGGSGSDDGGGSGGGGGG 118
V V GGGG+ G G G +RA GR WW+ C+ GGGSG GG+G GGG
Sbjct: 90 VRVRGGGGDIGAEGEG*EFGVSRAVEGR---WWKRVGECEVCGGGSGEGLRGGAGVRGGG 260
Query: 119 GG 120
GG
Sbjct: 261 GG 266
Score = 24.6 bits (52), Expect = 4.6
Identities = 14/29 (48%), Positives = 16/29 (54%), Gaps = 4/29 (13%)
Frame = +3
Query: 62 VDGGGGNDG--GGSG--GSSGGGARAWWG 86
V GGG +G GG+G G GGG WG
Sbjct: 201 VCGGGSGEGLRGGAGVRGGGGGGWPESWG 287
>BP054137
Length = 474
Score = 43.9 bits (102), Expect = 7e-06
Identities = 28/78 (35%), Positives = 36/78 (45%), Gaps = 21/78 (26%)
Frame = -2
Query: 40 VVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGS-------------------SGGG 80
VV+VA+T+VV + AV+ GGGGN G GS +GG
Sbjct: 470 VVIVAITMVVSTMVAVMERG----GGGGNGSRGDDGSGEWWRQRNGSSGDNDDDINNGGS 303
Query: 81 ARAWWGRRRQ--WWRWRQ 96
AWW RR+ WW WR+
Sbjct: 302 GGAWWLLRRRWCWWWWRR 249
Score = 41.2 bits (95), Expect = 5e-05
Identities = 29/79 (36%), Positives = 38/79 (47%), Gaps = 2/79 (2%)
Frame = -3
Query: 4 AMMVAAAVVVAMLAVVEGGGDSGGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVV- 62
+++V AA VVE GGDS ++VVVA+T+ + + AVV
Sbjct: 418 SVVVVAATAAEATTVVENGGDS-------------AMVVVAITMTISTMVAVVERGGCCD 278
Query: 63 -DGGGGNDGGGSGGSSGGG 80
DG GG G S GSSG G
Sbjct: 277 DDGVGGGGDGDSSGSSGDG 221
Score = 33.1 bits (74), Expect = 0.013
Identities = 24/71 (33%), Positives = 30/71 (41%), Gaps = 30/71 (42%)
Frame = -1
Query: 20 EGGGDSGGGGWCWWRR--------WRR----------------------SVVVVAVTVVV 49
+GG D G W WWR+ WR SVVVVA T+V+
Sbjct: 435 DGGSD---GAWWWWRQRQQRRRR*WRMVATAQW**WR*R*RYQQWWQWWSVVVVATTMVL 265
Query: 50 IVVEAVVVEAV 60
+VV V+V AV
Sbjct: 264 VVVATVIVVAV 232
Score = 29.3 bits (64), Expect = 0.19
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 63 DGGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQW 97
+GG D G G WW R+RQ R R W
Sbjct: 474 NGGDSGDNDGCINDGGSDGAWWWWRQRQQRRRR*W 370
>AV427919
Length = 308
Score = 43.5 bits (101), Expect = 1e-05
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = -3
Query: 80 GARAW-WGRRRQWW--RWRQWCDDGGGSGSDDGGGSGGGGGGG 119
G +W GRRR+WW RW + GGGS ++ GG GGGGGG
Sbjct: 120 GRHSWNCGRRRRWWS*RWNR----GGGSEAEKGGFFSGGGGGG 4
>CN825556
Length = 655
Score = 43.1 bits (100), Expect = 1e-05
Identities = 28/67 (41%), Positives = 31/67 (45%), Gaps = 13/67 (19%)
Frame = -3
Query: 67 GNDGGGSGGSSG-----GGARAW-WGRRRQW-------WRWRQWCDDGGGSGSDDGGGSG 113
G+ G GSG SSG GG W WG W W C G G GS+ GGG+G
Sbjct: 617 GSPGEGSGASSG*GRDAGGGTGWGWGWGWGWG*GWG*GWG*GCGCGCGCGCGSEGGGGTG 438
Query: 114 GGGGGGG 120
GGG G
Sbjct: 437 CGGGSTG 417
Score = 33.1 bits (74), Expect = 0.013
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -1
Query: 38 RSVVVVAVTVVVIVVEAVVVE----AVVVDGGGGNDGGGSGGSSGGGARA 83
R+VVV A+ V VVE VVVE AV + G G G G+ + GA A
Sbjct: 640 RAVVVFALVVQERVVELVVVEAGTLAVALAGAGAGAGAGAEAGAEAGAEA 491
>TC16586 weakly similar to UP|Q93VQ9 (Q93VQ9) At1g31020/F17F8_6 (Thioredoxin
o) (At2g20920/F5H14.11), partial (35%)
Length = 898
Score = 43.1 bits (100), Expect = 1e-05
Identities = 20/41 (48%), Positives = 24/41 (57%), Gaps = 1/41 (2%)
Frame = -3
Query: 66 GGNDGGGSGGSSGGGARAWWGRR-RQWWRWRQWCDDGGGSG 105
G + G GSGG GG R WW RR R +W W+ + G GSG
Sbjct: 269 GRSKGNGSGGREGGEWRRWWRRRGRLFWNWKVKKEGGCGSG 147
>TC7921 homologue to UP|Q8LHP9 (Q8LHP9) OJ1008_F01.11 protein, partial (7%)
Length = 1202
Score = 42.4 bits (98), Expect = 2e-05
Identities = 34/92 (36%), Positives = 43/92 (45%), Gaps = 5/92 (5%)
Frame = -2
Query: 34 RRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGSSGGGARAWWGRRRQWWR 93
RR + VV +T VV +V+ DGGGG GG SG R WW + WR
Sbjct: 547 RRKQMVVVDSDLTRRESVVVTDLVDREETDGGGG---GGGCRKSGTARRRWW--QEI*WR 383
Query: 94 WRQW-CDDGGGSGSDDGGG----SGGGGGGGG 120
W++ GGG +GGG +GG GG G
Sbjct: 382 WKKR*LGVGGGRSVANGGGLWWRNGGRKGGSG 287
Score = 35.0 bits (79), Expect = 0.003
Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Frame = -3
Query: 24 DSGGGGWCWW-------RRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGS 76
D GG W WW R W ++ + V+VV VVV G G G G
Sbjct: 552 DEGGNRWWWWTRI*HGERAWWSQILWTGKKLTVVVV-------VVVAANLGRRGDGGGRR 394
Query: 77 SGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGG 114
S G R W D + D GGG+ G
Sbjct: 393 SDGDGRN--------GDWASVVADLSRTAVDCGGGTAG 304
Score = 28.1 bits (61), Expect = 0.42
Identities = 24/74 (32%), Positives = 28/74 (37%)
Frame = -1
Query: 21 GGGDSGGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGSSGGG 80
GGGD GG C RR I + + E DGGGG G + GG
Sbjct: 611 GGGDQGG---CC*RRNS-----------AIATDLMKEET---DGGGGL-GSDTARERGGH 486
Query: 81 ARAWWGRRRQWWRW 94
GR +WW W
Sbjct: 485 RSCGQGRN*RWWWW 444
Score = 24.6 bits (52), Expect = 4.6
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = -1
Query: 103 GSGSDDGGGSGGGGGG 118
G G+ +GGG+ GGGG
Sbjct: 146 GGGTPNGGGTPKGGGG 99
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 42.0 bits (97), Expect = 3e-05
Identities = 27/61 (44%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 64 GGGGNDGGG--SGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGG---GGGG 118
GGGG GGG GG GGG + G GGG G GGG GG GGGG
Sbjct: 611 GGGGGYGGGRREGGYGGGGGSRYSG------------GGGGGYGGSGGGGYGGRREGGGG 754
Query: 119 G 119
G
Sbjct: 755 G 757
Score = 40.0 bits (92), Expect = 1e-04
Identities = 23/54 (42%), Positives = 23/54 (42%)
Frame = +2
Query: 67 GNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
G GGG GG GGG R GGGS GGG G GG GGG
Sbjct: 596 GRGGGGGGGGYGGGRR------------EGGYGGGGGSRYSGGGGGGYGGSGGG 721
Score = 39.7 bits (91), Expect = 1e-04
Identities = 25/60 (41%), Positives = 26/60 (42%), Gaps = 3/60 (5%)
Frame = +2
Query: 64 GGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGG---GGGGG 120
GGGG GG GG GG G R + GGG GGG GG GGGGG
Sbjct: 602 GGGGGGGGYGGGRREGGYGGGGGSR--------YSGGGGGGYGGSGGGGYGGRREGGGGG 757
Score = 38.9 bits (89), Expect = 2e-04
Identities = 30/98 (30%), Positives = 34/98 (34%)
Frame = +2
Query: 22 GGDSGGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGSSGGGA 81
GG GGGG+ RR E GGG GG GG GG
Sbjct: 602 GGGGGGGGYGGGRR----------------------EGGYGGGGGSRYSGGGGGGYGGSG 715
Query: 82 RAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGG 119
+G RR+ GG GS +GGG GG
Sbjct: 716 GGGYGGRREG-------GGGGYGGSREGGGGSRYSSGG 808
Score = 26.9 bits (58), Expect = 0.93
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +1
Query: 80 GARAWWGRRRQWWRWRQW 97
G+R W RRR+WW R+W
Sbjct: 589 GSRPW--RRRRWWWIRRW 636
Score = 24.3 bits (51), Expect = 6.0
Identities = 13/34 (38%), Positives = 15/34 (43%), Gaps = 6/34 (17%)
Frame = +2
Query: 64 GGGG------NDGGGSGGSSGGGARAWWGRRRQW 91
GGGG GGG GGS GG + + W
Sbjct: 713 GGGGYGGRREGGGGGYGGSREGGGGSRYSSGGSW 814
>TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%)
Length = 562
Score = 41.6 bits (96), Expect = 4e-05
Identities = 25/59 (42%), Positives = 26/59 (43%), Gaps = 3/59 (5%)
Frame = +2
Query: 65 GGGNDGGGSGG---SSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
GGG GGG GG S GG R +G GG G D GG G GGGG G
Sbjct: 155 GGGRSGGGRGGRFDSGRGGGRGRFG--------------SGGRGGDRGGRGGSGGGGRG 289
Score = 36.2 bits (82), Expect = 0.002
Identities = 21/54 (38%), Positives = 23/54 (41%)
Frame = +2
Query: 67 GNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
G+ G GG SGGG + R R R GG GG GGG GG G
Sbjct: 137 GSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGGRGGDRGGRGGSGGGGRGGRG 298
Score = 29.6 bits (65), Expect(2) = 0.035
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +2
Query: 64 GGGGNDGGGSGGSSGGG 80
GG G D GG GGS GGG
Sbjct: 233 GGRGGDRGGRGGSGGGG 283
Score = 28.9 bits (63), Expect = 0.25
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 100 DGGGSGSDDGGGSGGGGGGG 119
D GSG GGG GGG GG
Sbjct: 128 DNQGSGGRSGGGRSGGGRGG 187
Score = 20.8 bits (42), Expect(2) = 0.035
Identities = 5/6 (83%), Positives = 5/6 (83%)
Frame = +1
Query: 32 WWRRWR 37
WWR WR
Sbjct: 169 WWRTWR 186
>AW719741
Length = 413
Score = 41.2 bits (95), Expect = 5e-05
Identities = 25/56 (44%), Positives = 26/56 (45%)
Frame = -2
Query: 65 GGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
G N GG GG G WW RR R + DDGGG GGGGGGGG
Sbjct: 181 GPWNLKGGDGGWHG-----WWRRRGIVMRIE--------TSGDDGGGDGGGGGGGG 53
Score = 33.9 bits (76), Expect = 0.008
Identities = 20/52 (38%), Positives = 23/52 (43%)
Frame = -2
Query: 26 GGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGSGGSS 77
G GGW W WRR +V+ + E DGGG GGG GG S
Sbjct: 160 GDGGWHGW--WRRRGIVMRI------------ETSGDDGGGDGGGGGGGGFS 47
Score = 23.9 bits (50), Expect = 7.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 20 EGGGDSGGGG 29
+GGGD GGGG
Sbjct: 91 DGGGDGGGGG 62
>AV427333
Length = 387
Score = 41.2 bits (95), Expect = 5e-05
Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -3
Query: 63 DGGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSG--GGGGGGG 120
DGGGG+DGGG G GGGA G + W GGG +GG G G GGGG
Sbjct: 250 DGGGGDDGGGEGCPRGGGANE*EGGGGD---LK*WEGVGGGLKGWEGGVGGL*GWEGGGG 80
Score = 39.7 bits (91), Expect = 1e-04
Identities = 23/55 (41%), Positives = 26/55 (46%)
Frame = -3
Query: 65 GGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGG 119
G G GGG G + GGG G + C GG +G DDGGG GGG G
Sbjct: 364 GEGGSGGGGGRTCGGGVIG*CGDGGG-----RTCGGGGVNG*DDGGGGDDGGGEG 215
Score = 35.4 bits (80), Expect = 0.003
Identities = 22/51 (43%), Positives = 23/51 (44%)
Frame = -3
Query: 70 GGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
G G GGS GGG R G C DGGG GG +G GGGG
Sbjct: 370 GEGEGGSGGGGGRTCGGGVIG*------CGDGGGRTCGGGGVNG*DDGGGG 236
Score = 26.2 bits (56), Expect = 1.6
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Frame = -3
Query: 91 WWRWRQWCDDGGGSGSDDGG------GSGGG---GGGG 119
WW GGG G GG G GGG GGGG
Sbjct: 379 WWFGEGEGGSGGGGGRTCGGGVIG*CGDGGGRTCGGGG 266
>BI418940
Length = 550
Score = 41.2 bits (95), Expect = 5e-05
Identities = 33/90 (36%), Positives = 37/90 (40%), Gaps = 2/90 (2%)
Frame = -3
Query: 26 GGGGWCWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDGGGS--GGSSGGGARA 83
G GWCW R RRS GGGG + G S G SGGG
Sbjct: 272 GRVGWCWGCRRRRSWKC---------------------GGGGAEMGLSKLGMFSGGG--- 165
Query: 84 WWGRRRQWWRWRQWCDDGGGSGSDDGGGSG 113
GRRR+ WRWR GGG G++ G
Sbjct: 164 --GRRRRSWRWR----GGGGGGAEKENEKG 93
Score = 22.7 bits (47), Expect(2) = 1.2
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = -3
Query: 74 GGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSD 107
G G G + GRR R R+W GGG G++
Sbjct: 392 GEWKGRGCWSLGGRR---CRSRRWIRGGGGGGAE 300
Score = 22.3 bits (46), Expect(2) = 1.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 64 GGGGNDGGGSGGSSG 78
GGG GGG GG G
Sbjct: 529 GGGVEIGGGGGGVGG 485
>CN825698
Length = 704
Score = 41.2 bits (95), Expect = 5e-05
Identities = 22/48 (45%), Positives = 25/48 (51%)
Frame = -1
Query: 65 GGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGS 112
GGG+DGGG GG GGGA A G DGGG S + GG+
Sbjct: 179 GGGSDGGGGGGGGGGGAEAEDG-------------DGGGDLSSESGGA 75
Score = 36.2 bits (82), Expect = 0.002
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1
Query: 101 GGGSGSDDGGGSGGGGGGGG 120
GGG +GGGS GGGGGGG
Sbjct: 203 GGGRSESEGGGSDGGGGGGG 144
Score = 34.3 bits (77), Expect = 0.006
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1
Query: 101 GGGSGSDDGGGSGGGGGGGG 120
GG S S+ GG GGGGGGGG
Sbjct: 200 GGRSESEGGGSDGGGGGGGG 141
Score = 33.9 bits (76), Expect = 0.008
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -1
Query: 100 DGGGSGSDDGGGSGGGGGGG 119
+GGGS DGGG GGGGGGG
Sbjct: 182 EGGGS---DGGGGGGGGGGG 132
Score = 31.6 bits (70), Expect = 0.038
Identities = 18/52 (34%), Positives = 20/52 (37%)
Frame = -1
Query: 64 GGGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGG 115
GGGG GGS GGG GGG G++ G GGG
Sbjct: 206 GGGGRSESEGGGSDGGGG-----------------GGGGGGGAEAEDGDGGG 102
Score = 30.8 bits (68), Expect = 0.064
Identities = 18/51 (35%), Positives = 20/51 (38%)
Frame = -1
Query: 70 GGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGGG 120
GGG S GGG+ DGGG G GGG+ G GG
Sbjct: 203 GGGRSESEGGGS------------------DGGGGGGGGGGGAEAEDGDGG 105
Score = 30.4 bits (67), Expect = 0.084
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 101 GGGSGSDDGGGSGGGGGGGG 120
GGG S+ GG GGGGGG
Sbjct: 206 GGGGRSESEGGGSDGGGGGG 147
>AU251550
Length = 329
Score = 40.0 bits (92), Expect = 1e-04
Identities = 25/62 (40%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = -3
Query: 64 GGGGN-----DGGGSGGSSGGGARAWWGRRRQWWRWRQW-CDDGGGSGSDDGGGSGGGGG 117
GGGG GGG GG GGG W C +GGG G+ G GG GG
Sbjct: 273 GGGGG**NMAGGGGDGGPCGGGG---------------W*CPNGGGGGAGA*GSRGGPGG 139
Query: 118 GG 119
GG
Sbjct: 138 GG 133
Score = 32.3 bits (72), Expect = 0.022
Identities = 23/60 (38%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Frame = -3
Query: 65 GGGNDGGGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGS----GGGGGGGG 120
GGG GG GG G G G GGG G GGG GGGGG G
Sbjct: 327 GGGPGPGGCGGCGGPGGPGGGGG**NM-------AGGGGDGGPCGGGGW*CPNGGGGGAG 169
Score = 30.8 bits (68), Expect = 0.064
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = -3
Query: 63 DGGGGNDG--GGSGGSSGGGARAWWGRRRQWWRWRQWCDDGGGSGS--DDGGGSGGGGGG 118
+GGGG G G GG GGG G C GG G GGG GG GG
Sbjct: 192 NGGGGGAGA*GSRGGPGGGGL**PGG-----------CGGPGGGGLW*PGGGGPGGPGGP 46
Query: 119 G 119
G
Sbjct: 45 G 43
Score = 30.4 bits (67), Expect = 0.084
Identities = 31/101 (30%), Positives = 32/101 (30%), Gaps = 3/101 (2%)
Frame = -3
Query: 22 GGDSGGGGW-CWWRRWRRSVVVVAVTVVVIVVEAVVVEAVVVDGGGGNDG--GGSGGSSG 78
GG GGGGW C +GGGG G G GG G
Sbjct: 228 GGPCGGGGW*C------------------------------PNGGGGGAGA*GSRGGPGG 139
Query: 79 GGARAWWGRRRQWWRWRQWCDDGGGSGSDDGGGSGGGGGGG 119
GG G C GG G GG G GG GG
Sbjct: 138 GGL**PGG-----------CGGPGGGGLW*PGGGGPGGPGG 49
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.142 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,700,019
Number of Sequences: 28460
Number of extensions: 68265
Number of successful extensions: 7702
Number of sequences better than 10.0: 967
Number of HSP's better than 10.0 without gapping: 3002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5548
length of query: 120
length of database: 4,897,600
effective HSP length: 79
effective length of query: 41
effective length of database: 2,649,260
effective search space: 108619660
effective search space used: 108619660
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0090b.2