TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0089b.6
         (647 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF177509                                                               50  1e-06
BP072317                                                               49  2e-06
AV415611                                                               35  0.038
BP083536                                                               34  0.084
TC18180 weakly similar to GB|AAF04891.1|6175165|ATAC011437 Mutat...    30  1.6
BP081418                                                               28  4.6
TC8319 weakly similar to UP|RK4_TOBAC (O80361) 50S ribosomal pro...    27  7.8

>BF177509 
          Length = 472

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
 Frame = +1

Query: 411 WLMQIPTSAWCKQAFTFYTKCDVLMNKLYESFNATILLARDKPVLTMVD*IRSYIMGRFA 470
           W+ +IP   W    F       +  N + ES N  IL A   P++ M++ IR  +M  F 
Sbjct: 19  WIRRIPPRLWATAYFEGQRFGHLTAN-IVESLNTWILEASGLPIIQMMECIRRQLMTWFN 195

Query: 471 TMNEKMDKY*RGVMPKPLERLKWEIQMTSHLIPQCCG*DMFEVKHIVSHD-QFIVDLKKH 529
              E   ++   ++P     +   ++              FEV   +SH+   IVD++  
Sbjct: 196 ERRETSMQWASILVPSAERCVAEALERARTYQVLRANEAEFEV---ISHEGSNIVDIRNR 366

Query: 530 TCMCNFWELVGIPFRHEIAAI 550
            C+C  W+L G+P  H +AA+
Sbjct: 367 CCLCRGWQLYGLPCAHAVAAL 429


>BP072317 
          Length = 436

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = +3

Query: 483 VMPKPLERLKWEIQMTSHLIPQCCG*DMFEVKHIVSHDQF 522
           VMPKPL+RL WE++ TS+ +PQ  G  ++EVKH+V+ + F
Sbjct: 315 VMPKPLKRLAWEVKGTSNGLPQASGEGLYEVKHVVTLEGF 434


>AV415611 
          Length = 219

 Score = 35.0 bits (79), Expect = 0.038
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 523 IVDLKKHTCMCNFWELVGIPFRHEIAAISHNGQ 555
           +VD+ +  C C  W+L G+P  H IA I   GQ
Sbjct: 108 VVDIDRWECSCKTWQLTGVPCCHAIAVIVGIGQ 206


>BP083536 
          Length = 377

 Score = 33.9 bits (76), Expect = 0.084
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = +1

Query: 531 CMCNFWELVGIPFRHEIAAISH 552
           C CN WELV IP RH +A + +
Sbjct: 307 CCCNLWELVEIPCRHALAGVHY 372


>TC18180 weakly similar to GB|AAF04891.1|6175165|ATAC011437 Mutator-like
           transposase {Arabidopsis thaliana;} , partial (4%)
          Length = 513

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 23/89 (25%), Positives = 35/89 (38%), Gaps = 3/89 (3%)
 Frame = +3

Query: 559 DFVHAYYRRAAYRATYEHLVSPISGQKLWPTTNDEYILS---PLYRRALGRPKKLRMRDP 615
           D+   Y    +YR TY   V+PI    +  + + + +++   P  RR  GRP        
Sbjct: 12  DYCSRYCTTESYRLTYSERVNPIPIMAVPESKDSQPVVTVTPPFTRRPPGRP-------- 167

Query: 616 HEDTTNNHTRLHIGVSRNKFSRCGQFGHN 644
               T  +   +I       SRC   GHN
Sbjct: 168 ---ATKRYVSQNIVKRELHCSRCKGLGHN 245


>BP081418 
          Length = 459

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 6/56 (10%)
 Frame = +2

Query: 531 CMCNFWELVGIPFRHEIAAISHNGQKPEDFVHAYYRRA------AYRATYEHLVSP 580
           C+C+    V   F+HE +  +H+   P DFV+   RR       + RA++  L SP
Sbjct: 290 CLCS----VNCNFQHEDSIHTHSSSLPSDFVNMSCRRCSNSNSHSTRASHWFLSSP 445


>TC8319 weakly similar to UP|RK4_TOBAC (O80361) 50S ribosomal protein L4,
           chloroplast precursor (R-protein L4), partial (30%)
          Length = 650

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 20/37 (53%)
 Frame = -1

Query: 97  ISLCFVVRLVESIHLVSKQCMDYIPVGECSTTSLHQV 133
           + L  ++ L++ IHL+   C+ Y P    S T  HQV
Sbjct: 293 LHLLLLLPLLQHIHLLHHHCLGY*PHTSDSKTPQHQV 183


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.341    0.148    0.503 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,352,629
Number of Sequences: 28460
Number of extensions: 181700
Number of successful extensions: 1260
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of query: 647
length of database: 4,897,600
effective HSP length: 96
effective length of query: 551
effective length of database: 2,165,440
effective search space: 1193157440
effective search space used: 1193157440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 58 (26.9 bits)