TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0089a.1
         (119 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein...    67  3e-13
BI418821                                                               39  2e-04
AV418706                                                               30  0.11
TC18328 weakly similar to UP|HSP2_PANPA (P35299) Sperm histone P...    27  0.91
AV767772                                                               27  1.2
AV407543                                                               26  2.0
TC16537                                                                26  2.0
TC7948                                                                 25  2.6
BI419261                                                               25  3.5
TC8746 similar to PIR|T06396|T06396 isoprenylated protein - soyb...    25  3.5
TC17919 similar to UP|KPYA_RICCO (Q43117) Pyruvate kinase isozym...    25  3.5
BP037936                                                               25  4.5
TC15237 similar to UP|AAQ24632 (AAQ24632) GPRP, partial (64%)          25  4.5
TC13922 UP|Q99NH6 (Q99NH6) bZIP protein ATF7, partial (5%)             25  4.5
TC18522 weakly similar to UP|HSP1_OCTVU (P83214) Sperm protamine...    25  4.5
AV409412                                                               22  5.1
TC17596 similar to UP|Q42768 (Q42768) Acetohydroxyacid synthase ...    24  5.9
TC11625 weakly similar to UP|O81015 (O81015) At2g26920 protein, ...    24  5.9
AV411618                                                               24  5.9
TC16847 weakly similar to PIR|T51733|T51733 cytidine deaminase  ...    24  7.7

>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
           (66%)
          Length = 481

 Score = 67.0 bits (162), Expect(2) = 3e-13
 Identities = 43/97 (44%), Positives = 55/97 (56%)
 Frame = +3

Query: 3   MSVSMVREKLK*FDDQKGFRLITHDDGGNDLFI**SKIKSQGF*CLAEREFVDLLLTILI 62
           MS S V  K+K F+DQKGF  IT DDGG+DLF+  S+IKS+GF CL E E V+ ++    
Sbjct: 33  MSDSRVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVA-SD 209

Query: 63  PMAALRR*RD*RPD*API*GTCCGGNDSSGYGRGGGY 99
           P    +      P+   + GT  GG    G   GGGY
Sbjct: 210 PDGRAKAIEVTGPNGQAVQGTRRGGGAGGGGRGGGGY 320



 Score = 21.6 bits (44), Expect(2) = 3e-13
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = +2

Query: 106 RIWRNG--RQKRWRWF 119
           RIWR    R KRW W+
Sbjct: 374 RIWRRRRIRWKRWLWW 421


>BI418821 
          Length = 614

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +2

Query: 15  FDDQKGFRLITHDDGGNDLFI**SKIKSQGF*CLAEREFVD 55
           F++ KGF  I  DDGG DLF+  S I+S G+  L E + V+
Sbjct: 101 FNNVKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDLVE 223


>AV418706 
          Length = 374

 Score = 30.0 bits (66), Expect = 0.11
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
 Frame = -3

Query: 84  CCGGND-SSGYGRGGGYQEVVDI-----RIWRNGRQKRWRW 118
           CCGG     G GR GG+   V I     R WR     RW W
Sbjct: 147 CCGGEGVQHGDGRWGGWGRGVGILSAVMRCWRRRCHCRWAW 25


>TC18328 weakly similar to UP|HSP2_PANPA (P35299) Sperm histone P2 precursor
           (Protamine P2), partial (25%)
          Length = 517

 Score = 26.9 bits (58), Expect = 0.91
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -3

Query: 82  GTCCGGNDSSGYGRG----GGYQEVVDIRIWRNGRQK 114
           G CCGG D     RG     G+   V + +WR+G ++
Sbjct: 146 GRCCGGGDWEVAARGKTGIHGFVHGVVLFLWRSGGER 36


>AV767772 
          Length = 460

 Score = 26.6 bits (57), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 92  GYGRGGGYQEVVDIRIWRNGRQKRW 116
           G+G GGG+ E  +   W   R+KRW
Sbjct: 380 GFG*GGGFWEEKERGYWN*LRKKRW 306


>AV407543 
          Length = 227

 Score = 25.8 bits (55), Expect = 2.0
 Identities = 9/17 (52%), Positives = 10/17 (57%)
 Frame = -3

Query: 82 GTCCGGNDSSGYGRGGG 98
          GTCCGG    G+G   G
Sbjct: 93 GTCCGGGGGGGHGGSVG 43


>TC16537 
          Length = 622

 Score = 25.8 bits (55), Expect = 2.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 103 VDIRIWRNGRQKRWR 117
           +D RIWR   +K+WR
Sbjct: 238 LDTRIWRRDNEKKWR 194


>TC7948 
          Length = 1230

 Score = 25.4 bits (54), Expect = 2.6
 Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 8/43 (18%)
 Frame = -2

Query: 83  TCCGGNDSSGYGRGGGYQEVV--------DIRIWRNGRQKRWR 117
           TCCGG        GGG  EV+        ++R+WR    +R+R
Sbjct: 347 TCCGGV-------GGGGCEVIQVKYGE*SEVRVWRRIIMRRFR 240


>BI419261 
          Length = 591

 Score = 25.0 bits (53), Expect = 3.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 87  GNDSSGYGRGGGYQEVVD 104
           G D+ GYG G GY +  D
Sbjct: 410 GRDAGGYGSGXGYSDGCD 463


>TC8746 similar to PIR|T06396|T06396 isoprenylated protein - soybean
           (fragment) {Glycine max;}, partial (30%)
          Length = 594

 Score = 25.0 bits (53), Expect = 3.5
 Identities = 10/17 (58%), Positives = 11/17 (63%)
 Frame = +1

Query: 82  GTCCGGNDSSGYGRGGG 98
           GTC GG  S G+  GGG
Sbjct: 538 GTCGGGGISLGFSDGGG 588


>TC17919 similar to UP|KPYA_RICCO (Q43117) Pyruvate kinase isozyme A,
           chloroplast precursor  , partial (11%)
          Length = 566

 Score = 25.0 bits (53), Expect = 3.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 94  GRGGGYQEVVDIRIWRNGRQKRWRW 118
           G GGG+      R+W+ G   RWRW
Sbjct: 276 GGGGGW--CGGRRVWKMGGGCRWRW 208


>BP037936 
          Length = 518

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (53%)
 Frame = -1

Query: 82  GTCCGGNDSSGYGRGGGYQEVVDI 105
           G CCGGN     G GGG +   +I
Sbjct: 146 GRCCGGN-----GGGGGVETAFEI 90


>TC15237 similar to UP|AAQ24632 (AAQ24632) GPRP, partial (64%)
          Length = 814

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 84  CCGGNDSSGYGRGGGY 99
           CCGG  + GY   GGY
Sbjct: 321 CCGGYPAGGYPCCGGY 274


>TC13922 UP|Q99NH6 (Q99NH6) bZIP protein ATF7, partial (5%)
          Length = 511

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
 Frame = -2

Query: 85  CGGNDSS----GYGRGGGYQEV 102
           CG N  S    G G GGGYQ V
Sbjct: 165 CGSNSGSSGGGGGGEGGGYQAV 100


>TC18522 weakly similar to UP|HSP1_OCTVU (P83214) Sperm protamine P1 (Po1)
           [Contains: Sperm protamine P2 (Po2) (Main protamine)],
           partial (68%)
          Length = 320

 Score = 24.6 bits (52), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 82  GTCCGGNDSSGYGRGGGYQEVVD 104
           G   GG   +  G GGG++EVV+
Sbjct: 220 GEDSGGETLAAVGGGGGFEEVVE 152


>AV409412 
          Length = 426

 Score = 21.6 bits (44), Expect(2) = 5.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 94  GRGGGYQEVVDIRIWRNGRQKRWRW 118
           GRG    E   I  WR G + R RW
Sbjct: 279 GRGREVME*RGIS*WRKGGRGRNRW 205



 Score = 21.2 bits (43), Expect(2) = 5.1
 Identities = 9/17 (52%), Positives = 10/17 (57%)
 Frame = -2

Query: 82  GTCCGGNDSSGYGRGGG 98
           G   GG+D  G G GGG
Sbjct: 419 GVVEGGDDVEGGGGGGG 369


>TC17596 similar to UP|Q42768 (Q42768) Acetohydroxyacid synthase  , partial
           (16%)
          Length = 537

 Score = 24.3 bits (51), Expect = 5.9
 Identities = 15/52 (28%), Positives = 18/52 (33%), Gaps = 17/52 (32%)
 Frame = -2

Query: 84  CCGGNDSSGYGRGG--------------GYQEVVDIRIWRNG---RQKRWRW 118
           CC G+   G+G G               G  E  DI  W  G   R+  W W
Sbjct: 200 CCSGSGGGGFGEGA*DSDGMRFVENGREG*GEEFDIAFWEVGG*RRR*EW*W 45


>TC11625 weakly similar to UP|O81015 (O81015) At2g26920 protein, partial
           (8%)
          Length = 410

 Score = 24.3 bits (51), Expect = 5.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 86  GGNDSSGYGRGGGYQEVVDIRIWRNGRQKRWR 117
           GG    G G GGG     + R WR   ++R R
Sbjct: 260 GGGGGGGGGGGGGITVEWENRRWRERERERER 355


>AV411618 
          Length = 320

 Score = 24.3 bits (51), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 90  SSGYGRGGGYQEVVDIRIWRNGRQKRW 116
           SSGY R    +    +RIWRN  + RW
Sbjct: 218 SSGYERR---KTTARVRIWRNEVKDRW 289


>TC16847 weakly similar to PIR|T51733|T51733 cytidine deaminase  [validated]
           - Arabidopsis                thaliana {Arabidopsis
           thaliana;} , partial (74%)
          Length = 1098

 Score = 23.9 bits (50), Expect = 7.7
 Identities = 16/56 (28%), Positives = 27/56 (47%)
 Frame = +1

Query: 56  LLLTILIPMAALRR*RD*RPD*API*GTCCGGNDSSGYGRGGGYQEVVDIRIWRNG 111
           L++T+L P    RR      D  P+ G CC  +  S   R     ++++++  RNG
Sbjct: 790 LIMTVLSPPCWWRR-MGRWLDRRPLQGCCCKKSPLSASSRLSFVLQLIELKFVRNG 954


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.359    0.166    0.627 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,003,595
Number of Sequences: 28460
Number of extensions: 23826
Number of successful extensions: 557
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of query: 119
length of database: 4,897,600
effective HSP length: 79
effective length of query: 40
effective length of database: 2,649,260
effective search space: 105970400
effective search space used: 105970400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 49 (23.5 bits)