TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0087.11
         (146 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17491                                                                27  1.1
AV426324                                                               27  1.8
AV779547                                                               24  9.1
TC13967 similar to GB|AAP37806.1|30725568|BT008447 At5g25265 {Ar...    24  9.1

>TC17491 
          Length = 640

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 50  VGELSEIFQWKGEVARGLPNWSCDDKEHLEE 80
           V   SE F WK   ARG   W C+D   L E
Sbjct: 194 VNPFSERFLWKNSSARG-QTWCCEDDVVLRE 283


>AV426324 
          Length = 393

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 49  EVGELSEIFQWKGEVARGLPNW-SCDDKEHLEEELSDVLLYLVRLADVCG 97
           ++ E  E+F   G++  G P+W S  D++ L+  +S+    LV   D  G
Sbjct: 235 KMSENDEVFPEYGKMKNGFPSWVSNKDRKLLQASVSETKFDLVDAKDGSG 384


>AV779547 
          Length = 556

 Score = 24.3 bits (51), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 17  LQDLSKRLAEFAEVRGWDQYHSPRN 41
           +Q   K LAE A++ GWD  + P +
Sbjct: 475 VQRWRKALAEVADLSGWDVTNKPEH 549


>TC13967 similar to GB|AAP37806.1|30725568|BT008447 At5g25265 {Arabidopsis
           thaliana;}, partial (31%)
          Length = 555

 Score = 24.3 bits (51), Expect = 9.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 31  RGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVARGLPNW 70
           R +D    P+NL L   G    +  + +   E    +PNW
Sbjct: 220 RSYDHVAPPQNLTLPPPGVPESVVTLVKMVNEATASIPNW 339


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,068,971
Number of Sequences: 28460
Number of extensions: 24317
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of query: 146
length of database: 4,897,600
effective HSP length: 82
effective length of query: 64
effective length of database: 2,563,880
effective search space: 164088320
effective search space used: 164088320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)