TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0083.5
         (176 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV409041                                                               77  2e-15
CN825057                                                               66  4e-12
AV776853                                                               52  6e-08
TC17936 similar to UP|Q8C1C0 (Q8C1C0) PPAR gamma coactivator-1BE...    46  3e-06
BP073048                                                               28  0.68
TC13009 similar to GB|AAL09709.1|15982737|AY057475 AT4g23750/F9D...    28  1.2
TC8931 similar to GB|AAL09731.1|15982767|AY057490 At2g32240/F22D...    27  2.0
BP038206                                                               27  2.0
TC18477                                                                26  3.4
TC15958 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Ar...    26  3.4
TC8251 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Ara...    26  4.4
TC15539                                                                25  5.8
AV412520                                                               25  7.5
BP083541                                                               25  7.5
TC12176 weakly similar to UP|AAQ09151 (AAQ09151) NADH dehydrogen...    25  7.5
TC11277                                                                25  7.5
TC18417 weakly similar to UP|Q8W228 (Q8W228) Cytochrome P450, pa...    25  9.8
TC16280                                                                25  9.8
CB826912                                                               25  9.8

>AV409041 
          Length = 349

 Score = 76.6 bits (187), Expect = 2e-15
 Identities = 38/100 (38%), Positives = 55/100 (55%)
 Frame = +3

Query: 1   MEFESEDAAKVFYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGS 60
           +EFES +AA  FY EYA+  GF    +S RRS      +  +  C + G+    + +   
Sbjct: 45  IEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGN----KQQSDD 212

Query: 61  IRRPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 100
              PR S + GCKA +H+K  + GKW +  FVK+HNH L+
Sbjct: 213 AINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELL 332


>CN825057 
          Length = 721

 Score = 65.9 bits (159), Expect = 4e-12
 Identities = 32/89 (35%), Positives = 50/89 (55%)
 Frame = +1

Query: 12  FYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREG 71
           FY EYA+ +GF   + + RRS++    +  +  C++ G      G  GS RR      + 
Sbjct: 10  FYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDG--GSNRRSSVKKTD- 180

Query: 72  CKAMIHIKYDKSGKWVITKFVKDHNHPLV 100
           CKA +H+K    GKW+I +F+K+HNH L+
Sbjct: 181 CKACMHVKRKPDGKWIIHEFIKEHNHELL 267


>AV776853 
          Length = 625

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
 Frame = +1

Query: 1   MEFESEDAAKVFYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCLNIRGKLGS 60
           ++F SE+ A  FY  YA++ GF++R     R +  G +  R+  CN++G    +R K   
Sbjct: 238 LDFGSEEEAYQFYQAYAKYQGFIVRKDDIGR-DYHGNVNMRQFVCNRQG----LRSKKHY 402

Query: 61  IRRPRAS-----TREGCKAMIHIKYD-KSGKWVITKFVKDHNHPL 99
            R  R       T   C A + +  D K GKW +  F + HNH L
Sbjct: 403 NRTDRKRDHKPVTHTNCLAKLRVHLDYKIGKWKVVSFEECHNHEL 537


>TC17936 similar to UP|Q8C1C0 (Q8C1C0) PPAR gamma coactivator-1BETA protein,
           partial (3%)
          Length = 552

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -3

Query: 112 EKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVKIHHIVNNLKE 165
           +K KKIQELT E+ I  + C  Y+  L + ++ +EE   KLSVK+ +   +LKE
Sbjct: 418 DKQKKIQELTGELEITNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE 257


>BP073048 
          Length = 465

 Score = 28.5 bits (62), Expect = 0.68
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = -1

Query: 98  PLVVSPREARQTMDEKDKKIQELTAEIRIKK 128
           PL+VS     Q + E D+KIQE +   RI K
Sbjct: 330 PLLVSSYHMDQMLKEHDRKIQEFSRRARIDK 238


>TC13009 similar to GB|AAL09709.1|15982737|AY057475 AT4g23750/F9D16_220
           {Arabidopsis thaliana;}, partial (5%)
          Length = 642

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 12/61 (19%)
 Frame = -3

Query: 117 IQELTAEIRIKKRLCAT-------YQEQLSSFMKIVE-----EHSDKLSVKIHHIVNNLK 164
           I  + +E +I K++C         +++  S +  I+E     ++  KL VK+HHI+ N K
Sbjct: 331 IPTIESEFQILKQICTRAAATTIIFEKHASFWQHIIEAVVSVQNILKLDVKLHHIIWNWK 152

Query: 165 E 165
           +
Sbjct: 151 Q 149


>TC8931 similar to GB|AAL09731.1|15982767|AY057490 At2g32240/F22D22.1
           {Arabidopsis thaliana;} , partial (4%)
          Length = 876

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 15/56 (26%), Positives = 28/56 (49%)
 Frame = +1

Query: 100 VVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSVK 155
           + + + A     E +  ++    E+ IKK      Q+Q++   + ++  SDKLSVK
Sbjct: 91  IANQKVAESQKLELEASLKNSLEELEIKKNEITLLQKQVTDLEQKLQLTSDKLSVK 258


>BP038206 
          Length = 563

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = -3

Query: 95  HNHPLVVSPREARQTMDEKDKKIQELTAEIRIKKRLCATYQEQLSSFMKIVEEHSDKLSV 154
           H++PL +      Q      + + ++     IKK +   Y+ Q +  MK+++ H  ++++
Sbjct: 351 HDYPLSIVDHIGFQRYSNSLQPLFQVPTRNTIKKEVIKIYEFQKTCVMKMLDSHEGRVAI 172


>TC18477 
          Length = 655

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = +3

Query: 113 KDKKIQELTAEIRIKKRLCATYQEQLSSFMKI--------VEEHSDKLSVKIHHIVNNLK 164
           K KKI       R +++  A++   L S + +        + EH ++ +  I H+ NNLK
Sbjct: 273 KSKKIMVHREIERKRRQDMASFYASLRSLLPLEFIKGKRSLSEHINEAANYIKHMQNNLK 452

Query: 165 EFEPIE 170
           E   IE
Sbjct: 453 ELGAIE 470


>TC15958 similar to GB|AAP37838.1|30725632|BT008479 At4g24220 {Arabidopsis
           thaliana;}, partial (52%)
          Length = 800

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 27  MSCRRSERDGRILARRLGCNKEGHCLNIRGKLGSIRRPRASTREGCK 73
           + CRR  R       R GC++ G   + R + G  RR  +S R GC+
Sbjct: 434 LGCRRDRRC------RTGCSRLGDRRSRRVEGGGRRRRLSSGRRGCR 312


>TC8251 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Arabidopsis
           thaliana;}, partial (41%)
          Length = 909

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (56%)
 Frame = +1

Query: 131 CATYQEQLSSFMKIVEEHSDKLSVKIHH 158
           C  YQ  L  F+   E+HS  L++ +HH
Sbjct: 1   CWQYQRLLRIFLIHAEKHSKALTLFLHH 84


>TC15539 
          Length = 722

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 13/31 (41%), Positives = 20/31 (63%), Gaps = 4/31 (12%)
 Frame = +2

Query: 26  VMSCRRSE---RDGRILARRLGCNKE-GHCL 52
           + SCR+     RDG + A ++GCN++ G CL
Sbjct: 128 IWSCRKGS*LCRDGGLGAGQMGCNQQ*GLCL 220


>AV412520 
          Length = 307

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 97  HPLVVSPREARQTMDEKDKKIQELTAE 123
           HPL  SPR+ R  + E + K   L  E
Sbjct: 199 HPLFFSPRQFRYFLKENEGKTNSLAIE 119


>BP083541 
          Length = 479

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -2

Query: 87  VITKFVKDHNHPLVVSPREARQTMDEKDKKIQELT 121
           VIT +  +  HP +V P E ++++++  K++ +L+
Sbjct: 475 VITSYALESVHPQLVVPDEVKKSVNQLLKEVVKLS 371


>TC12176 weakly similar to UP|AAQ09151 (AAQ09151) NADH dehydrogenase subunit
           2, partial (6%)
          Length = 478

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 10/28 (35%), Positives = 18/28 (63%)
 Frame = -3

Query: 89  TKFVKDHNHPLVVSPREARQTMDEKDKK 116
           T F+K H +PL+++P+E     D + K+
Sbjct: 404 TIFLKKHANPLIMNPQEKYNCED*RQKE 321


>TC11277 
          Length = 773

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -3

Query: 154 VKIHHIVNNLKEFEPI 169
           +KIHHI+ N + F PI
Sbjct: 207 IKIHHILENCRCFRPI 160


>TC18417 weakly similar to UP|Q8W228 (Q8W228) Cytochrome P450, partial (38%)
          Length = 747

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 151 KLSVKIHHIVNNLKEFEPI 169
           K+S ++H +VNN  E EPI
Sbjct: 668 KISNQVHSLVNNPLEVEPI 612


>TC16280 
          Length = 905

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 72  CKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPREARQ 108
           C   I   Y K    V+ KFV+ H HP     R  R+
Sbjct: 24  CSE*ISWNYQKMTTCVLLKFVQCHGHPCCHQGRVPRK 134


>CB826912 
          Length = 597

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 10  KVFYDEYARHVGFVMRVMSCRRSERDGR 37
           K    EYA+ + + M + +C++ E  GR
Sbjct: 370 KNLLQEYAQKMSYAMPLYNCKKEETPGR 453


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,983,140
Number of Sequences: 28460
Number of extensions: 37342
Number of successful extensions: 181
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of query: 176
length of database: 4,897,600
effective HSP length: 84
effective length of query: 92
effective length of database: 2,506,960
effective search space: 230640320
effective search space used: 230640320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)