TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0082b.2
         (153 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10900 weakly similar to UP|Q9CB03 (Q9CB03) F17L21.25 (AT1G2746...   172  2e-44
BP057574                                                               62  3e-11
BP054586                                                               59  3e-10
TC18276 similar to UP|O82039 (O82039) SPINDLY protein, partial (...    38  9e-04
TC18543 similar to UP|Q94EJ1 (Q94EJ1) At1g22700/T22J18_13, parti...    28  0.54
BP041585                                                               27  1.2
AV769945                                                               27  1.6
AU251642                                                               26  3.5

>TC10900 weakly similar to UP|Q9CB03 (Q9CB03) F17L21.25
           (AT1G27460/F17L21_26), partial (5%)
          Length = 609

 Score =  172 bits (437), Expect = 2e-44
 Identities = 85/114 (74%), Positives = 99/114 (86%), Gaps = 3/114 (2%)
 Frame = +2

Query: 43  YTASRCHVIGTMHEAKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRS 102
           Y+ASRCH  G M+EAKGLYKEA+ AFR+AL+IDP HVPSLISTA+ L+R +N S+P VRS
Sbjct: 5   YSASRCHASGMMYEAKGLYKEALTAFREALDIDPDHVPSLISTALVLKRCTNPSNPAVRS 184

Query: 103 FLMDALRYDRLNASAWYNLGILHKAEG---RVLEAVECFQAANSLEETAPIEPF 153
           FLMDALR+DRLNASAWYNLG+LHKAEG    V+EA ECFQAA SLEE+AP+EPF
Sbjct: 185 FLMDALRHDRLNASAWYNLGLLHKAEGTASSVVEAAECFQAAYSLEESAPVEPF 346


>BP057574 
          Length = 507

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = -2

Query: 106 DALRYDRLNASAWYNLGILHKAEGRVLEAVECFQAANSLEETAPIEPF 153
           DALR +  N  AWY LG+ HKA+GRV +A +CFQAA  LEE+ PIE F
Sbjct: 503 DALRIEPTNRMAWYYLGLTHKADGRVGDAADCFQAAYMLEESEPIEDF 360


>BP054586 
          Length = 340

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 26/56 (46%), Positives = 40/56 (71%)
 Frame = -1

Query: 98  PVVRSFLMDALRYDRLNASAWYNLGILHKAEGRVLEAVECFQAANSLEETAPIEPF 153
           P+ RSFLM+ALR +  N   W+NLG++ K+EG + +A + FQAA  L+ +AP++ F
Sbjct: 310 PIARSFLMNALRIEPENHDVWFNLGLVSKSEGSLQQAADYFQAAYELKLSAPVQKF 143


>TC18276 similar to UP|O82039 (O82039) SPINDLY protein, partial (10%)
          Length = 660

 Score = 37.7 bits (86), Expect = 9e-04
 Identities = 22/82 (26%), Positives = 42/82 (50%)
 Frame = +1

Query: 57  AKGLYKEAVKAFRDALNIDPRHVPSLISTAVALRRWSNQSDPVVRSFLMDALRYDRLNAS 116
           ++  + +++  +   L  D  +V +LI   + L+        +    L +A++ D  NA 
Sbjct: 421 SRNKFVDSLAMYERVLETDNGNVEALIGKGICLQM--QNMGRLAFDSLSEAIKLDPQNAC 594

Query: 117 AWYNLGILHKAEGRVLEAVECF 138
           A  + GIL+K EGR++EA E +
Sbjct: 595 ALTHCGILYKEEGRLMEAAESY 660


>TC18543 similar to UP|Q94EJ1 (Q94EJ1) At1g22700/T22J18_13, partial (41%)
          Length = 518

 Score = 28.5 bits (62), Expect = 0.54
 Identities = 12/28 (42%), Positives = 18/28 (63%)
 Frame = +1

Query: 51  IGTMHEAKGLYKEAVKAFRDALNIDPRH 78
           +G  +E+K  YK A+KAF + L  DP +
Sbjct: 220 LGDAYESKKDYKSALKAFEEVLLFDPHN 303


>BP041585 
          Length = 503

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 94  NQSDPVVRSFLMDALRYDRLNASAWYNLGILHKAEGRVLEAVE 136
           N++ P   SF    L     NA+ WYN+G +   E R +  V+
Sbjct: 67  NRTVPGATSFPAVILSAASFNATLWYNMGQVVSTEARAMYNVD 195


>AV769945 
          Length = 284

 Score = 26.9 bits (58), Expect = 1.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 115 ASAWYNLGILHKAEGRVLEAVECFQAA 141
           A A+ NLG++  AEG + EA  CF+ A
Sbjct: 239 APAFNNLGLVFVAEGLLEEAKYCFEKA 159


>AU251642 
          Length = 427

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 16  DLAYAYISLSQWH 28
           +L+YAYI+L QWH
Sbjct: 342 NLSYAYIALLQWH 304


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,584,102
Number of Sequences: 28460
Number of extensions: 29261
Number of successful extensions: 129
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of query: 153
length of database: 4,897,600
effective HSP length: 82
effective length of query: 71
effective length of database: 2,563,880
effective search space: 182035480
effective search space used: 182035480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)