TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0082b.1
         (122 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15882                                                                25  3.7
CB829484                                                               25  3.7
AV765637                                                               25  3.7
TC12103                                                                25  4.8
TC14885 similar to UP|XTH8_ARATH (Q8L9A9) Probable xyloglucan en...    25  4.8
BP033261                                                               25  4.8
TC12731 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (33%)     24  6.3
TC10077                                                                24  8.3
TC14204 homologue to UP|Q9AVG8 (Q9AVG8) Isopentenyl diphosphate ...    24  8.3

>TC15882 
          Length = 613

 Score = 25.0 bits (53), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (58%)
 Frame = -1

Query: 15  KNIGIYPEIKAPWFHKQEGKDI 36
           +N+G+  E   PW H QE  +I
Sbjct: 226 RNMGLNLEANVPWIHGQENYNI 161


>CB829484 
          Length = 544

 Score = 25.0 bits (53), Expect = 3.7
 Identities = 11/42 (26%), Positives = 21/42 (49%)
 Frame = +2

Query: 47  YGYTGKNDNVYLQCFDANELKRIKNELEPKLGMDLKLVQLIA 88
           +GY   ND+    CF       ++ EL+     + KLV++++
Sbjct: 251 FGYNSVNDSKMCFCF*FQSTNELEEELKRVTAENKKLVEMLS 376


>AV765637 
          Length = 276

 Score = 25.0 bits (53), Expect = 3.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 55  NVYLQCFDANELKRIKNELEPKLGMDLKLV 84
           N++L CF  +ELK +        GMDL L+
Sbjct: 135 NLHLNCFRRSELKGVPF*TAIPFGMDLNLL 224


>TC12103 
          Length = 627

 Score = 24.6 bits (52), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (58%)
 Frame = -3

Query: 15  KNIGIYPEIKAPWFHKQEGKDI 36
           +N+G+  E   PW H QE  +I
Sbjct: 418 RNMGLNLEANVPWIHCQENYNI 353


>TC14885 similar to UP|XTH8_ARATH (Q8L9A9) Probable xyloglucan
           endotransglucosylase/hydrolase protein 8 precursor
           (At-XTH8) (XTH-8) , partial (93%)
          Length = 1257

 Score = 24.6 bits (52), Expect = 4.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
 Frame = +3

Query: 89  YNDWQETYEQKADGKWVE-----YDY 109
           YN W  + +QK D  WV+     YDY
Sbjct: 831 YNAWHLSDDQKTDYAWVQRNLVIYDY 908


>BP033261 
          Length = 528

 Score = 24.6 bits (52), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (44%)
 Frame = -2

Query: 82  KLVQLIAYNDWQETYEQKADGKWVEYDYDWMFKPGAMKKI 121
           K VQ+     W ETYE +  G +  +   W   PG  K +
Sbjct: 437 KRVQVALTEKWAETYENQGVGFYSMHP-GWAETPGVAKSL 321


>TC12731 similar to UP|AAQ62873 (AAQ62873) At1g76970, partial (33%)
          Length = 580

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 54  DNVYLQCFDANELKRIKNELEPKLGMDLKLVQLIAYNDWQETY 96
           +NV+ Q  + + LK +   ++ K  ++++   LI  + WQE +
Sbjct: 357 ENVFQQIIERDILKEMVKIVKKKPDLNVREKILILIDTWQEAF 485


>TC10077 
          Length = 560

 Score = 23.9 bits (50), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 11  HSTGKNIGIYPEIKAPWF 28
           HS+G +  I+  I+ PWF
Sbjct: 452 HSSGNSFPIF*SIRKPWF 399


>TC14204 homologue to UP|Q9AVG8 (Q9AVG8) Isopentenyl diphosphate isomerase
           1, partial (79%)
          Length = 1217

 Score = 23.9 bits (50), Expect = 8.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 96  YEQKADGKWVEYDYDWM 112
           Y+  +DGKW E++ D++
Sbjct: 580 YKAPSDGKWGEHELDYL 630


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,023,846
Number of Sequences: 28460
Number of extensions: 21563
Number of successful extensions: 70
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of query: 122
length of database: 4,897,600
effective HSP length: 79
effective length of query: 43
effective length of database: 2,649,260
effective search space: 113918180
effective search space used: 113918180
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)