TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0082a.8
         (876 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11979 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-...    41  7e-04
TC20154                                                                39  0.003
TC19708 similar to UP|O23522 (O23522) Triacylglycerol lipase hom...    39  0.005
BP085025                                                               38  0.006
AV425891                                                               36  0.023
TC11265 weakly similar to UP|Q9FY55 (Q9FY55) CLB1-like protein, ...    33  0.26
AV779131                                                               30  1.7
TC8765                                                                 30  1.7
TC8162 similar to UP|Q9XHE5 (Q9XHE5) Microtubule-associated prot...    29  3.7
BP044419                                                               29  3.7
BP045549                                                               28  4.8
TC12141 similar to UP|Q9LL47 (Q9LL47) SAG101, partial (4%)             28  6.3
TC15728 similar to AAS09986 (AAS09986) MYB transcription factor,...    28  6.3
TC18684 homologue to UP|Q94JQ8 (Q94JQ8) AT3g57880/T10K17_90, par...    28  6.3

>TC11979 similar to UP|Q9LVH4 (Q9LVH4) GTPase activating protein-like,
           partial (94%)
          Length = 711

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/67 (28%), Positives = 39/67 (57%)
 Frame = +1

Query: 106 TSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKRM 165
           +SDPYVV +M +Q +K+ +      P WNE+ T ++ + P+  + +  +D +  +   +M
Sbjct: 280 SSDPYVVVKMYNQKLKTRVIKKDVNPEWNEDLTLSV-IDPHHSVWLTVYDHDTFSKDDKM 456

Query: 166 GNAGVDL 172
           G+A  ++
Sbjct: 457 GDAEFEI 477


>TC20154 
          Length = 607

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 105 GTSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLP---PNKPLQVAAWDAN 157
           G++ P+V    D Q  ++  K     P WNE+F FNI  P   P++ ++V  ++ N
Sbjct: 237 GSASPFVEVDFDEQQQRTQTKHKDLNPYWNEKFVFNINNPRDLPHQTIEVVVYNYN 404


>TC19708 similar to UP|O23522 (O23522) Triacylglycerol lipase homolog
           (Triacylglycerol lipase like protein), partial (20%)
          Length = 588

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +1

Query: 739 ITMYNFGSPRVGNKRFAEVYNEKIKDSWRVVNHRDIIPTVP 779
           + +++FG PRVGNK F +    K     R+VN +D+I  VP
Sbjct: 28  VAVFSFGGPRVGNKAFGDRLMAKNVKVLRIVNSQDVITRVP 150


>BP085025 
          Length = 351

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 31/115 (26%), Positives = 45/115 (38%), Gaps = 4/115 (3%)
 Frame = +2

Query: 669 VTGHSLGGALATLLALELSSNQLTNMVDYVEEPKTHHIRQIMIANYGRISAMALSCPIFD 728
           +TGHSLGGALA L A  L+ +    ++D +E                             
Sbjct: 41  LTGHSLGGALAILFAAVLTFHDEAWLLDRLEG---------------------------- 136

Query: 729 NNAHLRGAISITMYNFGSPRVGNKRFAEVYNEKIKD----SWRVVNHRDIIPTVP 779
                       +Y FG PRVG+ +F E   +K++       R V   D++P VP
Sbjct: 137 ------------VYTFGQPRVGDHKFGEYMKDKLRKYDVRYLRYVYCNDMVPRVP 265


>AV425891 
          Length = 398

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 24/86 (27%), Positives = 37/86 (42%)
 Frame = +1

Query: 105 GTSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWDANLVAPHKR 164
           GTSDPYV     +   K+ I   T  P WN+   F        PL +   D N + P   
Sbjct: 145 GTSDPYVRVHYGNIKKKTKIIHKTLNPQWNQTLEFP---DDGSPLVLYVKDHNALLPTSS 315

Query: 165 MGNAGVDLEWLCDGDVHEILVELEGM 190
           +G   V+ + L    + +  + L+G+
Sbjct: 316 IGECVVEYQRLPPNQMADKWIPLQGV 393


>TC11265 weakly similar to UP|Q9FY55 (Q9FY55) CLB1-like protein, partial
           (16%)
          Length = 668

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
 Frame = +2

Query: 83  PFDINLAVILAGFAFEAYTTPP----GTSDPYVVFQMDSQTVKSNIKWGTK------EPT 132
           PF  N + +L      A   P     G  DP+VV  +     K+ IK  T+       P 
Sbjct: 53  PFAPNYSGVLYVTVISAENLPASHFMGNPDPFVVLTLRKAKSKAKIKNKTRVVNKNLNPN 232

Query: 133 WNEEFTFNIKLPPNKPLQVAAWDAN 157
           W++ F F+++   +  + V  WD N
Sbjct: 233 WDQTFGFDVEDGLHDMVIVEVWDKN 307


>AV779131 
          Length = 530

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
 Frame = -2

Query: 105 GTSDPYVVFQM-----DSQTVKSNIKWGTKEPTWNEEFTFNIKLPPNKPLQVAAWD 155
           G SDP++V  +     D+QT    + + +  P WN+ F F ++   +  L V  WD
Sbjct: 490 GKSDPFLVLTLRKADTDNQT---RVVYDSLNPVWNQTFDFVVEDGLHDMLIVEVWD 332


>TC8765 
          Length = 748

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 860 HMEDFYYVTLLE 871
           HMEDFYYVTLLE
Sbjct: 1   HMEDFYYVTLLE 36


>TC8162 similar to UP|Q9XHE5 (Q9XHE5) Microtubule-associated protein,
           partial (10%)
          Length = 976

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 32/129 (24%), Positives = 48/129 (36%), Gaps = 3/129 (2%)
 Frame = +1

Query: 267 QMSDTDNDEYDTEGSGELNESPFVLEMPPREAGSSEASNEACSEQRNTEEFHSHESDTEN 326
           Q S  +ND+    G  E++E+    E       + +A N  C+E             ++N
Sbjct: 94  QASGCNNDDAGNPGCHEISEASSNNEATKSGCNNDDAGNPQCNE------------ISDN 237

Query: 327 GHTSEPSTQTSGEELSNQLFWRDFTNVINVNVVQKLGLTVPGKFKW---DGLEFLDKIGS 383
           G  + PS  +   E + Q    D +     N V       P KF+W    G    D I  
Sbjct: 238 GPNNSPSPISGPPEYTPQTCNNDDSG----NSVTHPKERKPNKFQWLWKFGRNNADVISE 405

Query: 384 QSQNIAEAT 392
           +    AEAT
Sbjct: 406 KVGGAAEAT 432


>BP044419 
          Length = 437

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (52%)
 Frame = +3

Query: 300 SSEASNEACSEQRNTEEFHSHESDTENGHTSEPSTQTSGEELS 342
           +  +S+  CS Q+      S    +ENGH S+P  Q SG+ ++
Sbjct: 33  NKSSSSRXCSSQQKIASSSSETMASENGHGSQP--QISGDNVT 155


>BP045549 
          Length = 497

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
 Frame = +3

Query: 723 SCPIFD---NNAHLRGAISITMYNFGSPRVGNKRFAEVYNEKIKDSWRVVNHRD 773
           +C IF    +N H   A S+T     +P V NKRF    +    DSW V + R+
Sbjct: 285 ACIIFSP*THNYHFTRA-SLTKVTSTAPDVSNKRFLSGSSSLSGDSWGVADERE 443


>TC12141 similar to UP|Q9LL47 (Q9LL47) SAG101, partial (4%)
          Length = 501

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = +3

Query: 667 IYVTGHSLGGALATLLALELSSN 689
           + VTGH LGG++A+L  + L  N
Sbjct: 429 LIVTGHGLGGSVASLFTISLLDN 497


>TC15728 similar to AAS09986 (AAS09986) MYB transcription factor, partial
            (34%)
          Length = 1207

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/16 (68%), Positives = 13/16 (80%)
 Frame = -2

Query: 9    LLSPPSLNFPSQHSSK 24
            +LSPP LNFP +HS K
Sbjct: 1098 MLSPPPLNFPCRHSLK 1051


>TC18684 homologue to UP|Q94JQ8 (Q94JQ8) AT3g57880/T10K17_90, partial (16%)
          Length = 369

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 105 GTSDPYVVFQMDSQTVKSNIKWGTKEPTWNEEFTFNI 141
           GT+D Y V +   + V++     +  P WNE++T+ +
Sbjct: 110 GTTDAYCVAKYGQKWVRTRTIIDSFTPRWNEQYTWEV 220


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,966,241
Number of Sequences: 28460
Number of extensions: 182295
Number of successful extensions: 1012
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of query: 876
length of database: 4,897,600
effective HSP length: 98
effective length of query: 778
effective length of database: 2,108,520
effective search space: 1640428560
effective search space used: 1640428560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)