BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079c.8
(757 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP038017 120 6e-28
AV425218 92 3e-19
CN825057 91 9e-19
CB827002 86 2e-17
AV776853 66 2e-11
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp... 62 3e-10
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 62 4e-10
AV765466 47 1e-05
AV409041 40 0.001
TC12220 35 0.034
AV778163 33 0.22
TC18905 32 0.38
TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired re... 32 0.49
BF177509 31 0.64
TC18767 31 0.84
AV415611 30 1.1
TC16348 similar to UP|O23091 (O23091) SIMILARITY to SYT (AT4G008... 30 1.4
TC12477 29 3.2
TC17134 weakly similar to UP|LEC_BOWMI (P42088) Lectin (Agglutin... 28 4.2
AV423237 28 5.4
>BP038017
Length = 570
Score = 120 bits (302), Expect = 6e-28
Identities = 62/168 (36%), Positives = 96/168 (56%), Gaps = 1/168 (0%)
Frame = +2
Query: 205 LELEKGIDTC-TLPFLERDIRNFIQSQSSIGKESDASNVLKLCKSLKDRDDSFKYDFTLD 263
L+L+K I T PF +++S DA N+L K ++ ++ F Y LD
Sbjct: 83 LQLKKVIQXRNTTPF------TYVKSSQKRTLGRDAQNLLNYFKKMQGKNPGFYYAIQLD 244
Query: 264 ENNKLEHIIWAFGDSIRAYEAFGDVVVFDTTYRINRYDMPLGIWVGVDNHGNSIFFGCVL 323
+ N++ ++ WA S AY FGD V+FDT YR N+Y +P + GV++HG ++ FGC L
Sbjct: 245 DENRMINVFWADARSRSAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQNVLFGCAL 424
Query: 324 LRDEKIPSFSWALKSFLYFVNGKHPKTILTDQDVALKEAIAMELPNTK 371
L DE SF+W +++L +N + P +I TDQD A++ A+A P T+
Sbjct: 425 LLDESESSFTWLFRTWLSAMNDRPPVSITTDQDRAIQAAVAQVFPETR 568
>AV425218
Length = 419
Score = 92.0 bits (227), Expect = 3e-19
Identities = 50/140 (35%), Positives = 79/140 (55%), Gaps = 2/140 (1%)
Frame = +2
Query: 303 PLGIWVGVDNHGNSIFFGCVLLRDEKIPSFSWALKSFLYFVNGKHPKTILTDQDVALKEA 362
PL VGV++HG S+ FGC LL E SF W +S L+ ++G P+ I+TD A+K+A
Sbjct: 5 PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKKA 184
Query: 363 IAMELPNTKHAFCIWHIVAKLSSWFSFSLG-SRYNDFKYEFHK-VYHLECEDDFEHKWTL 420
I LP+T+H +C+ +I+ KL LG ++Y ++ VY D+FE W
Sbjct: 185 IETVLPSTRHRWCLSYIMKKLPQKL---LGYAQYESIRHHLQNVVYDAVVIDEFERNWKK 355
Query: 421 MIAQFGLGMDKHIDLLYSNR 440
++ FGL ++ ++ L+ R
Sbjct: 356 IVEDFGLEDNEWLNELFLER 415
>CN825057
Length = 721
Score = 90.5 bits (223), Expect = 9e-19
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 3/251 (1%)
Frame = +1
Query: 66 AYDFYCLFARKSGF--SIRRDHIYKSTKNQSENNPLGIYKREFVCHRAGITKQSKVSEVE 123
AY FY +A+ GF SI+ K TK +F C R G+T +S +
Sbjct: 1 AYSFYQEYAKSMGFTTSIKNSRRSKKTKE--------FIDAKFACSRYGVTPES---DGG 147
Query: 124 SQRKRKTSRCNCGAKMLVTTRTIGFEEKWVVKYFHNHHNHQLLDDKEVQFLPAYRSIPIV 183
S R+ + +C A M V + G KW++ F HNH+LL F +R++ +
Sbjct: 148 SNRRSSVKKTDCKACMHVKRKPDG---KWIIHEFIKEHNHELLPALAYHFR-IHRNVKLA 315
Query: 184 DQDRIMLLSKAGCSISLIIRVLELEKGIDTCTLPFLERDIRN-FIQSQSSIGKESDASNV 242
+++ + +L + + + G + L D+ + F + Q E DA +
Sbjct: 316 EKNNMDILHAVSERTRKMYVEMSRQSG-GCLNIESLVGDLNDQFKKGQYLAMDEGDAQVM 492
Query: 243 LKLCKSLKDRDDSFKYDFTLDENNKLEHIIWAFGDSIRAYEAFGDVVVFDTTYRINRYDM 302
L+ K ++ + +F Y L+E +L +I W SI Y +F DVV FDT+Y + +
Sbjct: 493 LEYFKHIQKENPNFFYSIDLNEEQRLRNIFWIDAKSINDYLSFNDVVSFDTSYIKSNEKL 672
Query: 303 PLGIWVGVDNH 313
P +VGV++H
Sbjct: 673 PFAPFVGVNHH 705
>CB827002
Length = 534
Score = 86.3 bits (212), Expect = 2e-17
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 4/161 (2%)
Frame = +1
Query: 436 LYSNRQFWALAYLKDFFFAGMTTTGRSESINSYIKRFLHVRTSLTDFVNQVGIAVNIRNQ 495
LYS+ + A +L+D FFA M+ T RS+S+NSY +++ T+L F A+ RN+
Sbjct: 49 LYSSCRQGAPVHLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEKALESRNE 228
Query: 496 AGEEARMRQKYHNPHIRTGFPIEEQAASMLTPYAFKLLQHEIELSTKYASTEEGENSYIV 555
A P +RT P+E+QA+ + T F Q E+ + + +++ ++ ++
Sbjct: 229 KEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASKADDDGEVI 408
Query: 556 RFHTKVDG----GRIVKWIEEDKSINCSCKEFEFSGILCRH 592
+H G VK+ + +CSC+ FEFSG+LCRH
Sbjct: 409 TYHVAKFGEDHKAYYVKFNVLEMKASCSCQMFEFSGLLCRH 531
>AV776853
Length = 625
Score = 66.2 bits (160), Expect = 2e-11
Identities = 42/128 (32%), Positives = 63/128 (48%), Gaps = 2/128 (1%)
Frame = +1
Query: 60 FNSEGDAYDFYCLFARKSGFSIRRDHIYKSTKNQSENNPLGIYKREFVCHRAGITKQSKV 119
F SE +AY FY +A+ GF +R+D I + + R+FVC+R G+ +
Sbjct: 244 FGSEEEAYQFYQAYAKYQGFIVRKDDIGRDYHGN-------VNMRQFVCNRQGLRSKKHY 402
Query: 120 SEVESQRKRK-TSRCNCGAKMLV-TTRTIGFEEKWVVKYFHNHHNHQLLDDKEVQFLPAY 177
+ + +R K + NC AK+ V IG KW V F HNH+L + V F+P Y
Sbjct: 403 NRTDRKRDHKPVTHTNCLAKLRVHLDYKIG---KWKVVSFEECHNHELTPARFVHFIPPY 573
Query: 178 RSIPIVDQ 185
R + D+
Sbjct: 574 RVMNDADK 597
>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
{Oryza sativa (japonica cultivar-group);}, partial (8%)
Length = 488
Score = 62.4 bits (150), Expect = 3e-10
Identities = 29/103 (28%), Positives = 55/103 (53%)
Frame = +1
Query: 238 DASNVLKLCKSLKDRDDSFKYDFTLDENNKLEHIIWAFGDSIRAYEAFGDVVVFDTTYRI 297
+A +L+ + + F + + LD+ +++ ++ W + Y FGD+V D+TY
Sbjct: 43 EAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDSTYCT 222
Query: 298 NRYDMPLGIWVGVDNHGNSIFFGCVLLRDEKIPSFSWALKSFL 340
+ + PL ++ G ++H ++ FG LL DE S+ W +SFL
Sbjct: 223 HSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFESFL 351
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 61.6 bits (148), Expect = 4e-10
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = +2
Query: 215 TLPFLERDIRNFI-QSQSSIGKESDASNVLKLCKSLKDRDDSFKYDFTLDENNKLEHIIW 273
+L F + D+ N I + + + DA+ L + D D F Y FT + LE++ W
Sbjct: 77 SLGFTKTDLSNHIAKPKRERIQNGDAAAALSYLEGKADNDPMFFYKFTKTGDESLENLFW 256
Query: 274 AFGDSIRAYEAFGDVVVFDTTYRINRYDMPLGIWVGV 310
G S Y FGDV+ FD+TY+ N+Y+ PL +++ V
Sbjct: 257 CDGVSRMDYNVFGDVIAFDSTYKKNKYNKPLVVFLHV 367
>AV765466
Length = 599
Score = 46.6 bits (109), Expect = 1e-05
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = -2
Query: 576 INCSCKEFEFSGILCRHAIRVLVMKNYFHLPTKYLPFRWRQ 616
+ C C+ FEF GILCRH++ +L + +P +Y+ RWR+
Sbjct: 598 VKCDCRLFEFRGILCRHSLAILSQERVKEVPDRYVLDRWRK 476
>AV409041
Length = 349
Score = 40.4 bits (93), Expect = 0.001
Identities = 32/107 (29%), Positives = 46/107 (42%)
Frame = +3
Query: 60 FNSEGDAYDFYCLFARKSGFSIRRDHIYKSTKNQSENNPLGIYKREFVCHRAGITKQSKV 119
F S AY FY +A+ +GF + +S ++ +F C R G +QS
Sbjct: 51 FESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKE------FIDAKFSCIRYGNKQQSD- 209
Query: 120 SEVESQRKRKTSRCNCGAKMLVTTRTIGFEEKWVVKYFHNHHNHQLL 166
++ R + + C A M V R G KW V F HNH+LL
Sbjct: 210 ---DAINPRPSPKIGCKASMHVKRRQDG---KWYVYSFVKEHNHELL 332
>TC12220
Length = 473
Score = 35.4 bits (80), Expect = 0.034
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 584 EFSGILCRHAIRVLVMKNYFHLPTKYLPFRWRQES 618
E+ G+LCRH +RV + +P++Y+ RW + +
Sbjct: 1 EYEGVLCRHPLRVFXILELREVPSRYILHRWTRNA 105
>AV778163
Length = 557
Score = 32.7 bits (73), Expect = 0.22
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -2
Query: 603 FHLPTKYLPFRWRQESSLVPTSSHIINCNDGSSFEFR---SLVQWLQVESLKTKDREEVA 659
F +P +YLP WR+ S VP+S + + + + ++V L ES K+K+R ++A
Sbjct: 556 FQIPDRYLPIPWRRMS--VPSSKLLPYASSDHAERVKLLPNMVSSLINESAKSKERLDIA 383
Query: 660 IRELERVIRIITDMP 674
+ ++ I + P
Sbjct: 382 TEPVSILLSRIREQP 338
>TC18905
Length = 340
Score = 32.0 bits (71), Expect = 0.38
Identities = 14/36 (38%), Positives = 22/36 (60%)
Frame = +2
Query: 157 FHNHHNHQLLDDKEVQFLPAYRSIPIVDQDRIMLLS 192
FH+HH ++L E QFLP + PI+ + ++ LS
Sbjct: 77 FHDHHTCEILHKLEAQFLP*W---PIIQETHVLFLS 175
>TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein, mutator-like transposase-like protein,
phytochrome A signaling protein-like, partial (3%)
Length = 666
Score = 31.6 bits (70), Expect = 0.49
Identities = 15/28 (53%), Positives = 16/28 (56%)
Frame = +3
Query: 279 IRAYEAFGDVVVFDTTYRINRYDMPLGI 306
I YE FGDVV DTTY N PL +
Sbjct: 9 IMDYEYFGDVVSLDTTYSTNNAYRPLAV 92
>BF177509
Length = 472
Score = 31.2 bits (69), Expect = 0.64
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +1
Query: 520 QAASMLTPYAFKLLQHEIELSTKYASTEEGENSYIVRFHTKVDGGRIVKWIEEDKSINCS 579
Q AS+L P A + + +E + Y E + V H +G IV + ++ C
Sbjct: 217 QWASILVPSAERCVAEALERARTYQVLRANEAEFEVISH---EGSNIV----DIRNRCCL 375
Query: 580 CKEFEFSGILCRHAIRVLV 598
C+ ++ G+ C HA+ L+
Sbjct: 376 CRGWQLYGLPCAHAVAALL 432
>TC18767
Length = 1004
Score = 30.8 bits (68), Expect = 0.84
Identities = 14/44 (31%), Positives = 21/44 (46%)
Frame = +2
Query: 714 GGVEVAKKPRHCHVPNCGGTDHDARNCPNKKRNVETFSSQSPNK 757
GG+E+ + C NCG +H R C + NV S++ K
Sbjct: 134 GGLEIIEDASRCF--NCGSYNHSLRECSRPRDNVAVNSARKQRK 259
>AV415611
Length = 219
Score = 30.4 bits (67), Expect = 1.1
Identities = 11/21 (52%), Positives = 16/21 (75%)
Frame = +3
Query: 578 CSCKEFEFSGILCRHAIRVLV 598
CSCK ++ +G+ C HAI V+V
Sbjct: 132 CSCKTWQLTGVPCCHAIAVIV 194
>TC16348 similar to UP|O23091 (O23091) SIMILARITY to SYT (AT4G00850
protein), partial (26%)
Length = 536
Score = 30.0 bits (66), Expect = 1.4
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 597 LVMKNYFHLPTKYLPFRWRQESSLVPTSSHIINCNDGSSFEFRSLVQWLQVESLKTK 653
L++ ++ HLP + RWR HI+ CN GS+ L QWL + K
Sbjct: 364 LLIHSHKHLPCLH---RWR----------HILRCNKGSTCNILRLQQWLSNKECSPK 495
>TC12477
Length = 452
Score = 28.9 bits (63), Expect = 3.2
Identities = 25/99 (25%), Positives = 38/99 (38%)
Frame = +3
Query: 622 PTSSHIINCNDGSSFEFRSLVQWLQVESLKTKDREEVAIRELERVIRIITDMPEEQEHAV 681
P H C S + +S Q + S+ + E VA+ E +RVI + T+ +E
Sbjct: 48 PPDLHFKECLSESC*QVKSSNQEHKF*SIMESENE-VAVEEEKRVIGVTTEENIGKEAVS 224
Query: 682 DMEPNVPNSNDCDVGNPIISKSKGRPKGSRPKGGVEVAK 720
D N +V P + P S VE +K
Sbjct: 225 DHSDNAELQTKNEVSKPTVEAESESPISSGDTVAVEASK 341
>TC17134 weakly similar to UP|LEC_BOWMI (P42088) Lectin (Agglutinin) (BMA),
partial (16%)
Length = 741
Score = 28.5 bits (62), Expect = 4.2
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Frame = +2
Query: 371 KHAFCIWHIVAKLSSWFSFSLGSRYNDFKYEFHK---VYHLECEDDF--------EHKWT 419
+H+ +W+ A+ WF LGS Y D E + +Y L+ F EH +
Sbjct: 383 RHSLRLWNYAAEKQKWFQRKLGSWYWDLASELGRNINLYLLDVSSRFLEIHGGFEEHPFD 562
Query: 420 LMIAQFGLGMDKHI 433
L + LG H+
Sbjct: 563 LRAWHY-LGASHHV 601
>AV423237
Length = 310
Score = 28.1 bits (61), Expect = 5.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 282 YEAFGDVVVFDTTYRINRYDMPLGIWVGVDNHGNSIFFGCVLLRDEKIPSFSW 334
Y FGD V+FDTT N + W G + + + L+ +E SF W
Sbjct: 38 YSYFGDAVIFDTTID-NHIESICSSW-G*SSWATCVIWLVALIANESESSFVW 190
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,692,655
Number of Sequences: 28460
Number of extensions: 224546
Number of successful extensions: 1224
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of query: 757
length of database: 4,897,600
effective HSP length: 97
effective length of query: 660
effective length of database: 2,136,980
effective search space: 1410406800
effective search space used: 1410406800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0079c.8