BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0079b.3
(382 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV423488 51 4e-07
TC12599 similar to AAR18374 (AAR18374) Nucleobase-ascorbate tran... 34 0.035
TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, part... 32 0.13
BP043633 30 0.67
TC12052 similar to UP|Q9LS78 (Q9LS78) Genomic DNA, chromosome 3,... 30 0.87
TC11485 29 1.5
AV427911 29 1.5
TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structura... 29 1.5
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 28 1.9
BP060761 28 1.9
TC9708 weakly similar to UP|Q84ME1 (Q84ME1) At5g19080/T16G12_120... 28 2.5
TC17010 similar to UP|BAC84225 (BAC84225) RRM-containing RNA-bin... 28 2.5
TC12587 weakly similar to UP|Q93XA2 (Q93XA2) TGA-type basic leuc... 28 3.3
BP078507 28 3.3
TC9032 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Ara... 27 4.3
BP039174 27 4.3
AV771330 27 4.3
TC10239 similar to UP|Q7NEZ8 (Q7NEZ8) Glr3729 protein, partial (8%) 27 4.3
AV410260 27 4.3
>AV423488
Length = 487
Score = 50.8 bits (120), Expect = 4e-07
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 3/159 (1%)
Frame = +3
Query: 12 HPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTGSTGSKVSDT 71
H G + +S +P S +ENF++ P +P +F +Q G T +
Sbjct: 66 H*GVGWLSSYRLSYPLVSSGYMAMVNENFSSVDAPEFP---EFSTQMTLGGMTAAN---- 224
Query: 72 QCEATPDDTQHEGLDDIDLEDEDQSSGKKRTR---WRVKDDLLLVQSWLNISKDPTVGTD 128
+ TP+ ED + K+T W +L+L+ W+N VG +
Sbjct: 225 --QFTPNQ-------------EDTTPKSKKTHSPAWSTAQNLVLISRWINRGTSSVVGKN 359
Query: 129 QTAAKFWDRIRDQFDEYRDFDTPPRTGKMLKCRFGKLSK 167
Q FW I + +E+ FD PPR G + R+ ++K
Sbjct: 360 QKGETFWRDIAEYCNEHCSFD-PPRDGIACRNRWNYMNK 473
>TC12599 similar to AAR18374 (AAR18374) Nucleobase-ascorbate transporter 12,
partial (6%)
Length = 527
Score = 34.3 bits (77), Expect = 0.035
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -2
Query: 14 GGNFQNSQYQMFPYTSQNQPLHPDENFTNPQ 44
GG Q+ P SQ PLHP EN TNPQ
Sbjct: 184 GGALGKMVNQLNPCHSQANPLHPSENLTNPQ 92
>TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, partial (4%)
Length = 622
Score = 32.3 bits (72), Expect = 0.13
Identities = 31/135 (22%), Positives = 41/135 (29%), Gaps = 10/135 (7%)
Frame = +3
Query: 8 NQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTGSTGSK 67
N PH+P Q + Q QP H P++ PP Q PP
Sbjct: 99 NDPHNPQHQQHQHQQHQHQFQQQQQPQHFHHQQPGPEFHRGPPPPPPQQPHPPPMMRQPS 278
Query: 68 VSDTQCEATPDDTQHEGLDDIDLEDEDQSSGKKRTRWRVKDD----------LLLVQSWL 117
S T G + S G KR R + + ++ W
Sbjct: 279 ASSTNLAPEFHHPGPGGPPPPHYDVHSDSHGAKRMRKHTQRKAVDYTSTVVRYMQIRMWQ 458
Query: 118 NISKDPTVGTDQTAA 132
+ S D TV TAA
Sbjct: 459 HDSSDRTVLQPTTAA 503
>BP043633
Length = 542
Score = 30.0 bits (66), Expect = 0.67
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +1
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQF----QSQA 58
P PP P P N + FP Q P HP PQ P Y PQ+Q+ Q+ +
Sbjct: 244 PQPPPPPPPPPDPN----HHHHFP---QIPPPHP------PQAPWYSPQFQYHHPSQTPS 384
Query: 59 PP 60
PP
Sbjct: 385 PP 390
>TC12052 similar to UP|Q9LS78 (Q9LS78) Genomic DNA, chromosome 3, P1
clone: MXO21, partial (21%)
Length = 426
Score = 29.6 bits (65), Expect = 0.87
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 12 HPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTGSTGSKVSDT 71
H +F +S P+ S + P P E+ P +P PPQ+ + Q PP ST S S T
Sbjct: 34 HSHSHFPHSPNSPPPFASFHHPPKPQES--EPHHP--PPQHSKKMQ-PP*ASTTSAASST 198
>TC11485
Length = 572
Score = 28.9 bits (63), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 259 EATPPTTRPKGKKAEKRKAKTTDT 282
E PP + KG+K KRK KTT+T
Sbjct: 441 ETRPPRQKQKGQKHIKRKNKTTNT 370
>AV427911
Length = 348
Score = 28.9 bits (63), Expect = 1.5
Identities = 13/42 (30%), Positives = 22/42 (51%), Gaps = 3/42 (7%)
Frame = +1
Query: 22 YQMFPYTSQNQPLHPDENFTNPQYPMY---PPQYQFQSQAPP 60
Y P + P+ P ++ +P P+Y PP+Y ++S PP
Sbjct: 82 YSSPPPPKEYPPVSPPYHYHSPPPPVYSPPPPKYYYKSPPPP 207
>TC18149 weakly similar to UP|Q91BL3 (Q91BL3) Essential structural protein
pp78/81, partial (5%)
Length = 710
Score = 28.9 bits (63), Expect = 1.5
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 5 PPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQ 53
P QPH G + QYQ P+ +QP P P + PPQ Q
Sbjct: 285 PLAPQPHPQPGAPPHQQYQQTPHPQYSQPAPPQHQPPIPS--INPPQLQ 425
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +1
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPT 61
SP PP P P YQ P S + P P P PP Y ++S PP+
Sbjct: 94 SPPPPSPSPPPP------YYYQSPPPPSHSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPS 255
Query: 62 GS 63
S
Sbjct: 256 PS 261
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +1
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQ--YPMYPPQYQFQSQAP 59
SP PP PH P Y+ P + + P P ++ +P P PP Y + S P
Sbjct: 286 SPPPPSPIPHPP------YYYKSPPPPTSSPP--PPYHYVSPPPPSPSPPPPYHYASPPP 441
Query: 60 PTGS 63
P+ S
Sbjct: 442 PSPS 453
Score = 26.2 bits (56), Expect = 9.7
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +1
Query: 2 SPYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPT 61
SP PP P P Y+ P S + P P P+ P Y ++S PPT
Sbjct: 190 SPPPPSPSPPPP------YYYKSPPPPSPSPPPPYYYKSPPPPSPIPHPPYYYKSPPPPT 351
Query: 62 GS 63
S
Sbjct: 352 SS 357
>BP060761
Length = 430
Score = 28.5 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = +1
Query: 5 PPQNQPHHPG-----GNFQNSQYQMFPYTSQNQPLHPDENFTNPQ 44
PP+ HPG GN + + TS P H +N TNP+
Sbjct: 217 PPEQSGSHPGPAPNAGNTLPAPKYVASSTSHPSPFHQPQNSTNPR 351
>TC9708 weakly similar to UP|Q84ME1 (Q84ME1) At5g19080/T16G12_120, partial
(30%)
Length = 754
Score = 28.1 bits (61), Expect = 2.5
Identities = 41/185 (22%), Positives = 63/185 (33%), Gaps = 1/185 (0%)
Frame = +1
Query: 3 PYPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTG 62
PY + PHHP Q + YTS TNP Y QF S
Sbjct: 103 PYYYSHHPHHPQPALPPPPPQGYYYTS-----------TNPSAANYVAPPQFYSNGYAAN 249
Query: 63 STGSKVSDTQCEATPDDTQHEGLDD-IDLEDEDQSSGKKRTRWRVKDDLLLVQSWLNISK 121
S ++ + Q + Q +G + D + KK +++D+ L + L +
Sbjct: 250 SMPARFHNQQTPFFVNPGQGQGQPGAVPPPYVDHQTAKK-----IRNDVNLHKHTLRLDF 414
Query: 122 DPTVGTDQTAAKFWDRIRDQFDEYRDFDTPPRTGKMLKCRFGKLSKDIQFFTGCYNKVTT 181
DP + +D + D F KCRF L F + +T
Sbjct: 415 DPNNPDHHLISFVFDALYDGSITIYYFAKEEE-----KCRFTPL------FPEAFEPITF 561
Query: 182 PWKSG 186
P++ G
Sbjct: 562 PFQKG 576
>TC17010 similar to UP|BAC84225 (BAC84225) RRM-containing RNA-binding
protein-like, partial (4%)
Length = 569
Score = 28.1 bits (61), Expect = 2.5
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Frame = +1
Query: 1 MSPYPPQNQPHH----PGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQS 56
M P PP HH P G + Q + PY P H + P +P Q+ Q
Sbjct: 88 MMPPPPGQYHHHQYYPPYGGYM--QQPVPPYQQYPPPYHAVVAPSQPPAANHPYQHSMQP 261
Query: 57 QAPPTGS---------TGSKVSDTQ 72
+ TGS TG+ S +Q
Sbjct: 262 GSSQTGSAPAGPAPAETGTSASGSQ 336
>TC12587 weakly similar to UP|Q93XA2 (Q93XA2) TGA-type basic leucine zipper
protein TGA1.1, partial (22%)
Length = 575
Score = 27.7 bits (60), Expect = 3.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 324 QQLKQSELQLRQEELKFKKAENFRAY----MDILNKNTSG 359
QQL+ S L+L Q EL+ KKA N Y +D+ +SG
Sbjct: 422 QQLETSRLKLMQLELEVKKARNQGLYTGSGLDVSYMGSSG 541
>BP078507
Length = 414
Score = 27.7 bits (60), Expect = 3.3
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Frame = -1
Query: 2 SPYP-PQNQPHHPGGNFQNSQYQMFPYTSQN-QPLHPDENFTNPQYPMY---PPQYQFQS 56
SPYP P +Q P + TS P P + NP P + PP S
Sbjct: 243 SPYPAPSSQLRPPPSTSHQPPPTLLQPTSDTPSPSPPPPSSPNPPPPHHSPNPPHPPSSS 64
Query: 57 QAPPTGSTGSKVSDTQCEAT 76
+PP S G + S Q AT
Sbjct: 63 PSPPQSSQGQR-STAQSPAT 7
>TC9032 similar to GB|AAP21369.1|30102902|BT006561 At4g19200 {Arabidopsis
thaliana;}, partial (50%)
Length = 502
Score = 27.3 bits (59), Expect = 4.3
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 4 YPPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTGS 63
YPPQ P PG + Q+ P QP +P + + YPPQ+ + PP G
Sbjct: 191 YPPQGYPPQPGHGYP-PQHGYPP-----QPGYPPQGYPPAG---YPPQHGY----PPAGY 331
Query: 64 TG 65
G
Sbjct: 332 PG 337
>BP039174
Length = 564
Score = 27.3 bits (59), Expect = 4.3
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = +1
Query: 274 KRKAKTTDTASSTLSFAPHPDVLAMGKAKMEMMANFREIRN 314
++ KT+ T+S+T SF HP +A + M + + IRN
Sbjct: 163 EKSLKTSSTSSTTPSFRNHPANIAEASSPTIMPSFSKSIRN 285
>AV771330
Length = 537
Score = 27.3 bits (59), Expect = 4.3
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -3
Query: 263 PTTRPKGKKAEKRKAKTTDTASSTLSFAPHPDVLAMGKAKMEMMANF 309
P P+ + + K D + + F+PHPD+L+ ++ + N+
Sbjct: 373 PAYAPRLLSSTITRTKKVDCTACSQCFSPHPDLLSTVATRIPVTTNY 233
>TC10239 similar to UP|Q7NEZ8 (Q7NEZ8) Glr3729 protein, partial (8%)
Length = 629
Score = 27.3 bits (59), Expect = 4.3
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -3
Query: 5 PPQNQPHHPGGNFQNSQYQMFPYTSQNQPLHPDENFTNPQYPMYPPQYQFQSQAPPTGST 64
P +++PHHP ++ + FP++ P + +P P P APP ++
Sbjct: 513 PSKSKPHHPTSSWSTHRVDSFPHSP--PPPSKSSSSLSPTSPNPTP-------APPPTAS 361
Query: 65 GSK 67
SK
Sbjct: 360 SSK 352
>AV410260
Length = 373
Score = 27.3 bits (59), Expect = 4.3
Identities = 31/125 (24%), Positives = 43/125 (33%), Gaps = 10/125 (8%)
Frame = +2
Query: 179 VTTPW------KSGHSEKDIMAEVHALFQVD----HKKDFTHENVWRMVKDEPKWKGQSM 228
++TPW +S S K + A A+ H+K N S
Sbjct: 59 ISTPWP*WIPPRSASSTKTVTASSAAVTSTT*SSPHQKPARSSNA-------------SP 199
Query: 229 KTNSRGQKKSGAGADGTSTDPSASIDCDEYEATPPTTRPKGKKAEKRKAKTTDTASSTLS 288
KTNS K+ + A TS+ PSA P+ P + A A + T T S
Sbjct: 200 KTNSSTSSKTPSSATPTSSSPSA-----------PSPTPTSRSASFSSAASAGTPPPTAS 346
Query: 289 FAPHP 293
P
Sbjct: 347 ALSSP 361
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,841,108
Number of Sequences: 28460
Number of extensions: 97094
Number of successful extensions: 651
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of query: 382
length of database: 4,897,600
effective HSP length: 92
effective length of query: 290
effective length of database: 2,279,280
effective search space: 660991200
effective search space used: 660991200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0079b.3