TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0076a.12
         (430 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19392 weakly similar to UP|Q9LR29 (Q9LR29) F26F24.17, partial ...   258  1e-69
TC16778 similar to UP|Q9STV4 (Q9STV4) Serine/threonine kinase-li...    33  0.091
TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing...    28  2.9
CB827134                                                               28  3.8
TC7913 similar to UP|Q8SAG1 (Q8SAG1) ATP sulfurylase, partial (88%)    27  5.0
TC15073 UP|Q40199 (Q40199) RAB11I (Fragment), complete                 27  5.0
TC19168 UP|AAB94924 (AAB94924) Histone H4, complete                    27  6.5
TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Ra...    27  8.5

>TC19392 weakly similar to UP|Q9LR29 (Q9LR29) F26F24.17, partial (24%)
          Length = 491

 Score =  258 bits (660), Expect = 1e-69
 Identities = 125/168 (74%), Positives = 141/168 (83%)
 Frame = -2

Query: 43  YPSMVVAKAASPINKNGFTSPSSTLNLDKGDPLVFGKYWKKKSEECMVVIKGCELMSYLS 102
           YPSMVV+KA+ P+     T   ST+NL+KGDP+VFGKYWKKKS+EC VVI+G E +SYLS
Sbjct: 490 YPSMVVSKASPPV-----TCSDSTINLEKGDPVVFGKYWKKKSDECSVVIQGWEFLSYLS 326

Query: 103 DTSNVCWYMLPELKDAIERLHHVVRNAVTKDKYIVIGTGTTQLFMAALFALSPSMTTSHP 162
           DTSNVCWYMLPELK AI+RLHHVV NAVT+DKYIVIGTG+TQLFMAALFALSPS T  HP
Sbjct: 325 DTSNVCWYMLPELKGAIQRLHHVVGNAVTQDKYIVIGTGSTQLFMAALFALSPSQTPDHP 146

Query: 163 INVVSATPYYSEYKDQLDLFCSERFQWGGDAGEYDKNETYIEVVNYPN 210
           INVVSA P+YSEYK ++D+  S   QW GDAG YDKNE YIEVVNYPN
Sbjct: 145 INVVSAAPHYSEYKPEIDVLRSAVVQWAGDAGVYDKNEPYIEVVNYPN 2


>TC16778 similar to UP|Q9STV4 (Q9STV4) Serine/threonine kinase-like protein
           (CBL-interacting protein kinase 8), partial (29%)
          Length = 767

 Score = 33.1 bits (74), Expect = 0.091
 Identities = 17/45 (37%), Positives = 25/45 (54%)
 Frame = -2

Query: 5   SCTSRIYINVCHSSHLTTRFMSTKQKQRARGFFQEHTLYPSMVVA 49
           +C S  ++NV H     + F + K  +  R FF+  TLYP +VVA
Sbjct: 364 TCISSCFLNV-HHVKCGSHFKNFKHNREMRSFFR*KTLYPHLVVA 233


>TC10567 similar to UP|AAR99376 (AAR99376) Ring domain containing protein,
           partial (27%)
          Length = 423

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +3

Query: 17  SSHLTTRFMSTKQKQRARGFFQEHTLYPSMVVAK----AASPINKNGFTSPSSTLNLDK 71
           +SHLT +   +   Q A   FQ H L+P   V K      + +NK GF+     L L +
Sbjct: 183 ASHLTMKRRRSHNVQYANQKFQNHPLFPYTAVTKPPYLLKARLNK*GFSHLQDPLVLHR 359


>CB827134 
          Length = 435

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 1/57 (1%)
 Frame = +2

Query: 37 FQEHTLYPSM-VVAKAASPINKNGFTSPSSTLNLDKGDPLVFGKYWKKKSEECMVVI 92
          FQ H+  P    + KAA  I+    TSPSS+LN D  D  V  +  KKK +  ++++
Sbjct: 17 FQSHSSSPIH*TLFKAA--IDDRSPTSPSSSLNSDAVDVAVNNQKKKKKQQR*LLLL 181


>TC7913 similar to UP|Q8SAG1 (Q8SAG1) ATP sulfurylase, partial (88%)
          Length = 1964

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +1

Query: 335 WEKLRRSIELRKVFTVAKYPKAYCNFANESFEALPAFVWLKCEEGIENAENYLGKLKIRG 394
           ++ L   + + K   + K+PK     A       P   ++  EE I NA N+L    +  
Sbjct: 619 FDSLGNPVAILKDIEIYKHPKEE-RIARTWGTTAPGLPYV--EETITNAGNWLIGGDLEV 789

Query: 395 RGGVRFGAGSKHVRLSMIGTDDEFT 419
              +++  G  H RLS  G  +EFT
Sbjct: 790 IEPIKYHDGLDHFRLSPAGLREEFT 864


>TC15073 UP|Q40199 (Q40199) RAB11I (Fragment), complete
          Length = 733

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
 Frame = -2

Query: 219 PMVKSIVEGKLVHDLAYYWPH-YTPITH------QANHDVMLFTLSKCTG 261
           P V  +++    H++ Y   H Y  I H      +  H++ +F+LSKC+G
Sbjct: 417 PRVIPLLKSLPAHNIVYLREHFYESIVHVQGLQCRGLHEIGVFSLSKCSG 268


>TC19168 UP|AAB94924 (AAB94924) Histone H4, complete
          Length = 480

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +1

Query: 380 IENAENYLGKLKIRGRGGVRFGAG 403
           I  + N+LGK+  RG+GG   G G
Sbjct: 16  ISKSPNFLGKMSGRGKGGKGLGKG 87


>TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Rab11B,
           partial (89%)
          Length = 973

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -3

Query: 219 PMVKSIVEGKLVHDLAYYWPH-YTPITH------QANHDVMLFTLSKCTG 261
           P V  + +    H++ Y   H Y  I H      +  H++ +F+LSKC+G
Sbjct: 731 PRVIPLXKSLPAHNIVYLREHXYESIVHVQGLQCRGLHEIGVFSLSKCSG 582


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,476,573
Number of Sequences: 28460
Number of extensions: 96737
Number of successful extensions: 445
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of query: 430
length of database: 4,897,600
effective HSP length: 93
effective length of query: 337
effective length of database: 2,250,820
effective search space: 758526340
effective search space used: 758526340
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)