TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0076a.11
         (428 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18224 similar to UP|O62531 (O62531) AP-47 protein (LD31377P), ...   185  1e-47
TC12013 homologue to UP|O23140 (O23140) AP47/50P, partial (44%)       184  2e-47
AW720005                                                              167  3e-42
TC19913 similar to UP|O62531 (O62531) AP-47 protein (LD31377P), ...   108  2e-24
TC16939 homologue to UP|O23140 (O23140) AP47/50P, partial (32%)       100  5e-22
TC18343 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly lik...    89  1e-18
TC9109 homologue to UP|O23140 (O23140) AP47/50P, partial (18%)         84  6e-17
AW720494                                                               53  4e-14
TC17894 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly lik...    45  3e-05
BP060871                                                               34  0.040
AV778204                                                               33  0.090
TC12154 homologue to GB|AAN28762.1|23505805|AY143823 At1g71970/F...    30  0.76
TC8001 similar to UP|Q8LC02 (Q8LC02) Lil3 protein, partial (56%)       28  2.9
TC9405 homologue to UP|Q84V96 (Q84V96) Aldehyde dehydrogenase 1 ...    27  4.9

>TC18224 similar to UP|O62531 (O62531) AP-47 protein (LD31377P), partial
           (19%)
          Length = 692

 Score =  185 bits (470), Expect = 1e-47
 Identities = 91/91 (100%), Positives = 91/91 (100%)
 Frame = +1

Query: 338 APEKDALIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQV 397
           APEKDALIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQV
Sbjct: 1   APEKDALIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQV 180

Query: 398 RYLKIIEKSGYQALPWVRYITMAGEYELRLI 428
           RYLKIIEKSGYQALPWVRYITMAGEYELRLI
Sbjct: 181 RYLKIIEKSGYQALPWVRYITMAGEYELRLI 273


>TC12013 homologue to UP|O23140 (O23140) AP47/50P, partial (44%)
          Length = 580

 Score =  184 bits (468), Expect = 2e-47
 Identities = 88/193 (45%), Positives = 129/193 (66%), Gaps = 5/193 (2%)
 Frame = +1

Query: 166 ISYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQ 225
           ++YKKNEVFLD+VESVN+L++S G ++R DV G + M+ +LSGMP+ KLGLND++ LE +
Sbjct: 1   LAYKKNEVFLDIVESVNLLMSSKGVVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKE 180

Query: 226 GR-----TTKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLI 280
            +     T  GK I+L+D+ FHQCV L RF +++T+SF+PPDG F+LM YR++  V    
Sbjct: 181 SQIKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPF 360

Query: 281 WVEATVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDAMNPNVRTSMGSAAYAPE 340
            V  T+++  ++R+E+ VK +S F  +  A  V +++PVP      N   + G A Y   
Sbjct: 361 KVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFTVTSGRAKYNAS 540

Query: 341 KDALIWKIRSFPG 353
            D L+WKIR FPG
Sbjct: 541 IDCLVWKIRKFPG 579


>AW720005 
          Length = 497

 Score =  167 bits (423), Expect = 3e-42
 Identities = 79/92 (85%), Positives = 87/92 (93%)
 Frame = +2

Query: 1   MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
           MAGAASALFLLDIKGRVLIWRDYRGDVTAL+AERFFTKLIEK+ D QSQDPVV+ NG++Y
Sbjct: 221 MAGAASALFLLDIKGRVLIWRDYRGDVTALEAERFFTKLIEKEGDPQSQDPVVYHNGVTY 400

Query: 61  MFVQHSNVYLMIATRQNCNAASLLFFLHRVVD 92
           MF+QH+NVYLM ATRQNCNAASL FFLHR+VD
Sbjct: 401 MFIQHTNVYLMAATRQNCNAASLFFFLHRIVD 496


>TC19913 similar to UP|O62531 (O62531) AP-47 protein (LD31377P), partial
           (12%)
          Length = 592

 Score =  108 bits (269), Expect = 2e-24
 Identities = 52/53 (98%), Positives = 53/53 (99%)
 Frame = +2

Query: 376 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 428
           ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQ+LPWVRYITMAGEYELRLI
Sbjct: 2   ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 160


>TC16939 homologue to UP|O23140 (O23140) AP47/50P, partial (32%)
          Length = 525

 Score =  100 bits (249), Expect = 5e-22
 Identities = 58/139 (41%), Positives = 83/139 (58%), Gaps = 1/139 (0%)
 Frame = +3

Query: 1   MAGAASALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQDPVVHDNGISY 60
           M  AASA++ L+++G VLI R YR DV     + F T ++  Q       PV    G S+
Sbjct: 108 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIM--QTKELGTCPVKQIGGCSF 281

Query: 61  MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFE-ELEEESLRDNFVVVYELLDE 119
            +++ SNVY++I    N N A    F+   V +FK YF    +E+++R+NFV++YELLDE
Sbjct: 282 FYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDE 461

Query: 120 IMDFGYPQYTEAKILSEFI 138
           IMDFGYPQ    +IL  +I
Sbjct: 462 IMDFGYPQNLSPEILKLYI 518


>TC18343 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly like protein,
           partial (37%)
          Length = 738

 Score = 89.0 bits (219), Expect = 1e-18
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 5/166 (3%)
 Frame = +1

Query: 267 LMTYRLSTQVKPLIWVEATVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDAMNP 326
           +M YR++ + +P   + A +E+    + E+++K  +QF    TA  V++++P+P      
Sbjct: 4   VMNYRITQEFRPPFRINALIEEAGSLKAEVILKVNAQFASSITANTVKVQMPLPKCTTRV 183

Query: 327 NVRTSMGSAAYAPE-KDA---LIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIR 382
           +     G+     + K+A   L W ++   GG E+ LRA+           T E   P+ 
Sbjct: 184 SFELEPGAVGQTTDFKEANKRLEWSLKKITGGSEHTLRAKLTFSQEIHGNITKE-SGPVS 360

Query: 383 VKFEIPYFTVSGIQVRYLKIIEKSG-YQALPWVRYITMAGEYELRL 427
           + F IP +  S +QV+YL+I +KSG ++   WVRY+T A  Y  R+
Sbjct: 361 MTFTIPMYNTSQLQVKYLQISKKSGTHEPYRWVRYVTQANSYVARI 498


>TC9109 homologue to UP|O23140 (O23140) AP47/50P, partial (18%)
          Length = 614

 Score = 83.6 bits (205), Expect = 6e-17
 Identities = 42/80 (52%), Positives = 55/80 (68%)
 Frame = +2

Query: 347 KIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKS 406
           KIR FPG  E  L AE  L S   E+ +  R  PI+++F++P FT SG++VR+LK+ EKS
Sbjct: 2   KIRKFPGQTEPTLSAEVELISTMTEKKSWTRP-PIQMEFQVPMFTASGLRVRFLKVWEKS 178

Query: 407 GYQALPWVRYITMAGEYELR 426
           GY  + WVRYIT AG YE+R
Sbjct: 179 GYNTVEWVRYITKAGSYEIR 238


>AW720494 
          Length = 482

 Score = 53.1 bits (126), Expect(2) = 4e-14
 Identities = 26/51 (50%), Positives = 34/51 (65%)
 Frame = +2

Query: 74  TRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFG 124
           TR N + + +L  L R+  V K Y   L E+S R NFV+VYELLDE++DFG
Sbjct: 248 TRVNVSPSLVLGLLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEMIDFG 400



 Score = 41.2 bits (95), Expect(2) = 4e-14
 Identities = 24/74 (32%), Positives = 40/74 (53%), Gaps = 1/74 (1%)
 Frame = +1

Query: 6   SALFLLDIKGRVLIWRDYRGDVTALDAERFFTKLIEKQADAQSQ-DPVVHDNGISYMFVQ 64
           S  F+L  +G  +++RDYRG+V    AE FF K+   + DA+    PV + +G++Y  V+
Sbjct: 40  SQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYFHVK 219

Query: 65  HSNVYLMIATRQNC 78
            + V +       C
Sbjct: 220 AAWVVICCYN*SQC 261


>TC17894 similar to UP|Q9SB50 (Q9SB50) Clathrin coat assembly like protein,
           partial (15%)
          Length = 368

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 21/49 (42%), Positives = 30/49 (60%), Gaps = 1/49 (2%)
 Frame = +2

Query: 380 PIRVKFEIPYFTVSGIQVRYLKIIEKS-GYQALPWVRYITMAGEYELRL 427
           P+ + F IP +  S +QV+YL+I +KS  +    WVRY+T A  Y  RL
Sbjct: 62  PLSMTFTIPMYNASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 208


>BP060871 
          Length = 501

 Score = 34.3 bits (77), Expect = 0.040
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 395 IQVRYLKIIEKS-GYQALPWVRYITMAGEYELRL 427
           +QV+YL+I +KS  +    WVRY+T A  Y  RL
Sbjct: 235 VQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 134


>AV778204 
          Length = 564

 Score = 33.1 bits (74), Expect = 0.090
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = -2

Query: 61  MFVQHSNVYLMIATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEI 120
           ++ +++ ++  +      N  + L  +H  V++  H+F  + E  L  NF  +Y +LDE 
Sbjct: 518 IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSHVCELDLVFNFHRLYLILDEF 339

Query: 121 MDFGYPQYTEAKILSE 136
           +  G  Q T  K + E
Sbjct: 338 ILAGELQATSKKAIIE 291


>TC12154 homologue to GB|AAN28762.1|23505805|AY143823 At1g71970/F17M19_12
           {Arabidopsis thaliana;}, partial (5%)
          Length = 584

 Score = 30.0 bits (66), Expect = 0.76
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 270 YRLSTQVKPLIWVEATVEKHSKSRIEIMVKARSQFKERS 308
           Y+L +QVKP IW +  + +  +++    +   S FKERS
Sbjct: 36  YKLISQVKPCIWRKKKMTRMMRTKFRS*ILFLSPFKERS 152


>TC8001 similar to UP|Q8LC02 (Q8LC02) Lil3 protein, partial (56%)
          Length = 1039

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 20/64 (31%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
 Frame = +2

Query: 30  LDAERFFTKLIEKQADAQS-QDPVVHDNGISYMFVQHSNVYLMIATRQNCNAASLLFFLH 88
           +DAE    K ++   ++ S ++PVV D  I   +      +L  A R N  AA + FF+ 
Sbjct: 326 IDAEARRRKWLQDNPESSSNENPVVFDTSIVPWWAWIKRFHLPEAERLNGRAAMIGFFMA 505

Query: 89  RVVD 92
            +VD
Sbjct: 506 YLVD 517


>TC9405 homologue to UP|Q84V96 (Q84V96) Aldehyde dehydrogenase 1 precursor 
           , partial (73%)
          Length = 1249

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 17/46 (36%), Positives = 22/46 (46%)
 Frame = -2

Query: 310 ATNVEIELPVPVDAMNPNVRTSMGSAAYAPEKDALIWKIRSFPGGK 355
           A N     PV VD +N ++ TSM  A  AP        + S PGG+
Sbjct: 960 AANPSTTFPVSVDPVNASLSTSM*LARGAPTVGPYPETMFSTPGGR 823


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,152,445
Number of Sequences: 28460
Number of extensions: 69090
Number of successful extensions: 325
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of query: 428
length of database: 4,897,600
effective HSP length: 93
effective length of query: 335
effective length of database: 2,250,820
effective search space: 754024700
effective search space used: 754024700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)