TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0075.14
         (356 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066906                                                               28  1.8
TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    28  1.8
TC18841                                                                28  3.1
BP037854                                                               26  8.9

>BP066906 
          Length = 386

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 10/32 (31%), Positives = 16/32 (49%)
 Frame = +3

Query: 139 RGDKGTTTVILEAVASHDLWIWHAFFGCPGTL 170
           R ++  T  I+  + S   W+WH  FG P  +
Sbjct: 225 RHEENYTRYIIWILPSFGFWLWHVIFGFPNNI 320


>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 28/123 (22%), Positives = 50/123 (39%), Gaps = 1/123 (0%)
 Frame = +3

Query: 2   FRRRYRMQKHVFLRIVADLSSSDNYFTQRVDAAKKEGISPLAKCTTAMRMLAYGVAADAV 61
           FRR +RM K  F  I  +L S+      + +   +E I    +    +  LA G     V
Sbjct: 384 FRRSFRMSKATFEMICRELDSA----VTKKNTMLREAIPVRQRVAVCIWRLATGDPLRLV 551

Query: 62  DEYIKIGGTTALECLRRFCNGII*LYEHEYLRAPTQEDLQRILQVSEQ-RGFPGMIGSID 120
            +   +G +T  + +   C+ I  +   ++LR P +  +       E   G P + G++ 
Sbjct: 552 AKRFGLGISTCHKLVLEVCSAIKTVLMPKFLRWPDEAAMTAAKSEFEALSGIPNIGGAMY 731

Query: 121 CMH 123
             H
Sbjct: 732 TTH 740


>TC18841 
          Length = 568

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
 Frame = +2

Query: 121 CMHWEWKN-CPKAWEGQFTRGDKGTTTVILEAVASHD 156
           C HWEW+N C K  +G      +G    +L  VA HD
Sbjct: 326 CSHWEWENSCQKYLKG----FSQGYMKPLLAGVA*HD 424


>BP037854 
          Length = 462

 Score = 26.2 bits (56), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (62%)
 Frame = -1

Query: 147 VILEAVASHDLWIWHAFFG 165
           +I  +V + DLW W  FFG
Sbjct: 282 LIFSSVLALDLWFWELFFG 226


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,308,929
Number of Sequences: 28460
Number of extensions: 83195
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of query: 356
length of database: 4,897,600
effective HSP length: 91
effective length of query: 265
effective length of database: 2,307,740
effective search space: 611551100
effective search space used: 611551100
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)