BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0074.7
(141 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI420337 32 0.032
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 32 0.032
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 32 0.041
AW164126 32 0.054
AV419982 31 0.092
AV409241 30 0.12
AU251550 30 0.12
TC17991 similar to UP|RIN4_ARATH (Q8GYN5) RPM1-interacting prote... 30 0.16
BI418387 30 0.16
TC14757 similar to UP|O04361 (O04361) Prohibitin, complete 29 0.35
AV427911 28 0.46
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 28 0.78
TC19198 28 0.78
TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro... 28 0.78
BP028625 28 0.78
TC14103 similar to UP|Q84XC6 (Q84XC6) Plasma intrinsic protein 2... 27 1.0
TC9708 weakly similar to UP|Q84ME1 (Q84ME1) At5g19080/T16G12_120... 27 1.3
TC7906 homologue to PIR|S46534|S46534 ubiquinol-cytochrome-c red... 27 1.3
TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-... 27 1.3
TC13458 weakly similar to UP|Z282_HUMAN (Q9UDV7) Zinc finger pro... 27 1.7
>BI420337
Length = 397
Score = 32.3 bits (72), Expect = 0.032
Identities = 20/67 (29%), Positives = 28/67 (40%), Gaps = 3/67 (4%)
Frame = +1
Query: 56 HSTEGTIRVSPDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSP 115
HS + P H++ P P + P P PP Y K P ++ +YY P P
Sbjct: 133 HSPPPPMHSPPPPYHYSS--PPPPPKKPYKYPSPPPPVYKYKSPPPRTPAYYYKSPPPPP 306
Query: 116 K---EYP 119
K +YP
Sbjct: 307 KNPYKYP 327
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 32.3 bits (72), Expect = 0.032
Identities = 21/62 (33%), Positives = 22/62 (34%), Gaps = 16/62 (25%)
Frame = +1
Query: 74 YYPEDPKEDPSVPP-----------WMSPPQYYNKDPSSKSSS-----YYSAEDPTSPKE 117
YY P PS PP PP YY K P S S YY + P SP
Sbjct: 85 YYKSPPPPSPSPPPPYYYQSPPPPSHSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSP 264
Query: 118 YP 119
P
Sbjct: 265 PP 270
Score = 27.7 bits (60), Expect = 0.78
Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Frame = +1
Query: 74 YYPEDPKEDPSVPPWM------------SPPQYYNKDPSSKSSS----YYSAEDPTSPKE 117
YY P PS PP PP YY P SS +Y + P SP
Sbjct: 229 YYKSPPPPSPSPPPPYYYKSPPPPSPIPHPPYYYKSPPPPTSSPPPPYHYVSPPPPSPSP 408
Query: 118 YPKVESSS 125
P +S
Sbjct: 409 PPPYHYAS 432
Score = 26.6 bits (57), Expect = 1.7
Identities = 19/56 (33%), Positives = 23/56 (40%), Gaps = 10/56 (17%)
Frame = +1
Query: 74 YYPEDPKEDPSVP-PWM----SPPQYYNKDPSSKSSS-----YYSAEDPTSPKEYP 119
Y+ + P P VP P+ PP YY K P S S YY + P S P
Sbjct: 7 YWYKSPPPPPPVPKPYYYKSPPPPPYYYKSPPPPSPSPPPPYYYQSPPPPSHSPPP 174
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 32.0 bits (71), Expect = 0.041
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -3
Query: 75 YPEDPKEDPS--VPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNS 132
+P P+ PS PP SPP P ++ P SP + + + H S
Sbjct: 834 HPSHPEPQPSC*APPSPSPPDQSLAPPQDPPAASPLQRSPPSPCSASQSTACTALSAHPS 655
Query: 133 SKYWHY 138
S YW++
Sbjct: 654 SPYWNH 637
>AW164126
Length = 387
Score = 31.6 bits (70), Expect = 0.054
Identities = 26/90 (28%), Positives = 32/90 (34%), Gaps = 19/90 (21%)
Frame = +2
Query: 55 IHSTEGTIRVSPDRKHFAL----YYPEDPKEDPSVPPWM----------SPPQYYNKDPS 100
I ST T+ + F + YY P PS P+ PP YY K P
Sbjct: 62 ISSTPSTLLLQVPTPTFTISKPYYYKSPPPPSPSPKPYYYKSPPPPSPSPPPPYYYKSPP 241
Query: 101 SKS-----SSYYSAEDPTSPKEYPKVESSS 125
S YY + P SP +P SS
Sbjct: 242 PPSPVPHPPYYYKSPPPPSPIPHPPYYYSS 331
Score = 26.2 bits (56), Expect = 2.3
Identities = 18/65 (27%), Positives = 26/65 (39%)
Frame = +3
Query: 74 YYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNSS 133
YY + P VP PP YY P S ++ TSP +P + Q H +
Sbjct: 36 YYYKSPPPPSPVP---HPPYYYKSPPPPSPSLNHTT---TSPHHHP-----HHLQNHTTI 182
Query: 134 KYWHY 138
+ H+
Sbjct: 183 NHLHH 197
>AV419982
Length = 415
Score = 30.8 bits (68), Expect = 0.092
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 83 PSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSS 125
PS+P +SPP PS+ +SS S+ T+P+ P +SS
Sbjct: 277 PSIPLSLSPPPPPPPPPSASTSSPSSSGKSTAPRSSPPTPTSS 405
>AV409241
Length = 282
Score = 30.4 bits (67), Expect = 0.12
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Frame = +2
Query: 29 ASPSLPKDPKHNNQGVRHEYCDQQAVIHS-TEGTIRVSPDRKHFALYYPEDPKEDPSVPP 87
++P +P P ++Q + Q HS T+ +P P P S PP
Sbjct: 5 STPQVPPQPHEHHQQHHQPHVQVQPPSHSPTKTPPPPTPP--------PPPPPATVSPPP 160
Query: 88 WMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSS 125
SPP P S S TSP+ P +SS
Sbjct: 161 TPSPPAAATPSPLSAKPSRKIPTSTTSPRSAPPPTTSS 274
>AU251550
Length = 329
Score = 30.4 bits (67), Expect = 0.12
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Frame = +2
Query: 72 ALYYPED-----PKEDPSVPPWMSPPQYYNKDPSS--KSSSYYSAEDPTSPKE 117
++ YP D P+ P PP PP Y+N P + YY+ P P++
Sbjct: 2 SMSYPHDHRHWPPQPGPPGPPGPPPPGYHNPPPPGPPQPPGYYNPPPPGPPRD 160
Score = 24.6 bits (52), Expect = 6.6
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = +2
Query: 76 PEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSP 115
P +P P PP YYN P Y+ P P
Sbjct: 71 PPPGYHNPPPPGPPQPPGYYNPPPPGPPRDPYAPAPPPPP 190
>TC17991 similar to UP|RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4,
partial (14%)
Length = 598
Score = 30.0 bits (66), Expect = 0.16
Identities = 24/74 (32%), Positives = 35/74 (46%), Gaps = 7/74 (9%)
Frame = +1
Query: 67 DRKHFALYYPEDPKE------DPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKE-YP 119
DR + P DP+E D ++PP S P ++DPS K S+ + E S ++ P
Sbjct: 220 DRTGTKMINPNDPEENSDLVLDNNLPPSKSKPGVDSEDPSGKGSARSTYESHRSMEDGDP 399
Query: 120 KVESSSYAQLHNSS 133
K S A+ N S
Sbjct: 400 KQFVDSPARQANDS 441
>BI418387
Length = 479
Score = 30.0 bits (66), Expect = 0.16
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 87 PWMSP---PQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNSSK 134
PW S P + PSS SSS+YS D P + ++S ++ H S+K
Sbjct: 50 PWFSSSATPYLFFSHPSSSSSSFYSPFDGGDPSKIGSTSTNS-SESHYSTK 199
>TC14757 similar to UP|O04361 (O04361) Prohibitin, complete
Length = 1141
Score = 28.9 bits (63), Expect = 0.35
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 76 PEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNSS 133
P P PP +PP + + S+ SSS SA T+P + SS ++ SS
Sbjct: 79 PAPPSASALPPPPSTPPSTPSMEASAPSSSTDSAASSTTPSAKEPISSSHGSRNPTSS 252
>AV427911
Length = 348
Score = 28.5 bits (62), Expect = 0.46
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Frame = +1
Query: 76 PEDPKEDPSV----------PPWMSPP--QYYNKDPSSKSSSYYSAEDPTSPKE-YPK 120
P PKE P V PP SPP +YY K P Y P P YPK
Sbjct: 91 PPPPKEYPPVSPPYHYHSPPPPVYSPPPPKYYYKSPPPPPKKPYKYPSPPPPVHVYPK 264
Score = 24.6 bits (52), Expect = 6.6
Identities = 11/23 (47%), Positives = 12/23 (51%)
Frame = +1
Query: 99 PSSKSSSYYSAEDPTSPKEYPKV 121
PS S+ Y P PKEYP V
Sbjct: 52 PSQISADGYIYSSPPPPKEYPPV 120
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 27.7 bits (60), Expect = 0.78
Identities = 15/37 (40%), Positives = 19/37 (50%)
Frame = +1
Query: 100 SSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNSSKYW 136
SS SSS S+ P+S P SSS + +SS W
Sbjct: 292 SSSSSSLSSSSTPSSSSSSPPSSSSSSSSSSSSSSSW 402
>TC19198
Length = 527
Score = 27.7 bits (60), Expect = 0.78
Identities = 15/47 (31%), Positives = 22/47 (45%)
Frame = -2
Query: 90 SPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNSSKYW 136
S P+ +N P K ++ A DP SPK V S + S ++W
Sbjct: 382 SLPRIHNVGPLGKGNNIPPARDPYSPKVSSAVS*GSKIRSAPSPRFW 242
>TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM) (NY-REN-43
antigen), partial (4%)
Length = 526
Score = 27.7 bits (60), Expect = 0.78
Identities = 19/52 (36%), Positives = 25/52 (47%)
Frame = +3
Query: 82 DPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSSYAQLHNSS 133
DPS P SPP + SS SS S+ +SP P+V S +L +S
Sbjct: 144 DPSPSP--SPPSISSSAVSSASSLLDSSSPSSSPSSSPRVLDSPIRRLKMTS 293
>BP028625
Length = 566
Score = 27.7 bits (60), Expect = 0.78
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 76 PEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSS 125
P DPK + P +PP Y +P K + DPT P P +S+
Sbjct: 278 PSDPKH*SNPHPPTTPPPYD*SNPKPKQT------DPTKPTRKPASPASN 409
>TC14103 similar to UP|Q84XC6 (Q84XC6) Plasma intrinsic protein 2,2, partial
(94%)
Length = 1199
Score = 27.3 bits (59), Expect = 1.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 76 PEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVESSS 125
P P +PS P SPP + PSS SS+ + P +P +SS
Sbjct: 187 PSGPSTEPSSPS-SSPPCSSSTSPSSPSSATAAKPTPLTPPTLAAALASS 333
>TC9708 weakly similar to UP|Q84ME1 (Q84ME1) At5g19080/T16G12_120, partial
(30%)
Length = 754
Score = 26.9 bits (58), Expect = 1.3
Identities = 15/56 (26%), Positives = 25/56 (43%), Gaps = 11/56 (19%)
Frame = +1
Query: 83 PSVPPWMSPPQYYNKDPSSKSSS---------YYSAEDPTSPKEY--PKVESSSYA 127
P PP + PP YY+ P + YY++ +P++ P+ S+ YA
Sbjct: 76 PHAPPHLPPPYYYSHHPHHPQPALPPPPPQGYYYTSTNPSAANYVAPPQFYSNGYA 243
>TC7906 homologue to PIR|S46534|S46534 ubiquinol-cytochrome-c reductase
Rieske iron-sulfur protein - potato
{Solanum tuberosum;} , partial (80%)
Length = 1179
Score = 26.9 bits (58), Expect = 1.3
Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 3/55 (5%)
Frame = +1
Query: 60 GTIRVSPDRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPS---SKSSSYYSAED 111
G + +SP H P P+ P P PP N DP+ S +S++ +ED
Sbjct: 94 GFLLLSPPPLHGGPTTPP-PRSSPGTPSLHRPPPPMNADPTRSRSDPNSFFPSED 255
>TC19458 weakly similar to UP|Q9STE8 (Q9STE8) Chloroplast import-associated
channel homolog (AT3g46740/T6H20_230), partial (10%)
Length = 469
Score = 26.9 bits (58), Expect = 1.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 83 PSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEYPKVES 123
PS+PP SPP P SSS P+SP+ +VE+
Sbjct: 133 PSLPPSHSPP------PPPPSSSTPPLSPPSSPRAEAEVEA 237
>TC13458 weakly similar to UP|Z282_HUMAN (Q9UDV7) Zinc finger protein 282
(HTLV-I U5RE binding protein 1) (HUB-1), partial (3%)
Length = 810
Score = 26.6 bits (57), Expect = 1.7
Identities = 17/52 (32%), Positives = 20/52 (37%)
Frame = +2
Query: 67 DRKHFALYYPEDPKEDPSVPPWMSPPQYYNKDPSSKSSSYYSAEDPTSPKEY 118
D K Y P P++PP SPP K P S S+ Y S Y
Sbjct: 245 DEKCAPCGYTSPPPPSPAIPP-PSPPPPSPKKPPSPSTVYCPPPPAPSSSSY 397
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.307 0.127 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,911,838
Number of Sequences: 28460
Number of extensions: 46216
Number of successful extensions: 366
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of query: 141
length of database: 4,897,600
effective HSP length: 81
effective length of query: 60
effective length of database: 2,592,340
effective search space: 155540400
effective search space used: 155540400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0074.7