TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.3
         (267 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14901 similar to UP|CAE47100 (CAE47100) 4,5-DOPA dioxygenase e...   553  e-159
TC11701 weakly similar to UP|CAE47100 (CAE47100) 4,5-DOPA dioxyg...   133  3e-32
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop...    29  0.73
TC19055                                                                28  1.2
AV778440                                                               27  4.7
TC12042 similar to GB|CAB87983.1|7576235|ATH276134 Pex10p {Arabi...    26  8.0

>TC14901 similar to UP|CAE47100 (CAE47100) 4,5-DOPA dioxygenase extradiol,
           partial (71%)
          Length = 1276

 Score =  553 bits (1426), Expect = e-159
 Identities = 267/267 (100%), Positives = 267/267 (100%)
 Frame = +1

Query: 1   MALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVV 60
           MALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVV
Sbjct: 202 MALKDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPRPTSILVISGHWDTAVPTVNVV 381

Query: 61  DSTNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWV 120
           DSTNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWV
Sbjct: 382 DSTNDTIYDFYGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDKKRGLDHGAWV 561

Query: 121 PLLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERH 180
           PLLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERH
Sbjct: 562 PLLLMYPEADIPVCQLSVQSNLDGTHHYNIGKALAPLKDEGVLIVGSGSAVHNLRALERH 741

Query: 181 ATVAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEN 240
           ATVAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEN
Sbjct: 742 ATVAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGEN 921

Query: 241 SKAKLIHSSIDLGSLSYASYQFTSDVI 267
           SKAKLIHSSIDLGSLSYASYQFTSDVI
Sbjct: 922 SKAKLIHSSIDLGSLSYASYQFTSDVI 1002


>TC11701 weakly similar to UP|CAE47100 (CAE47100) 4,5-DOPA dioxygenase
           extradiol, partial (29%)
          Length = 443

 Score =  133 bits (335), Expect = 3e-32
 Identities = 57/80 (71%), Positives = 71/80 (88%)
 Frame = +3

Query: 186 PWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLHVAIGAAGENSKAKL 245
           PWAV+F +WLK +LL GRYE+VN YE+KAP+AK AHPWPDHF+PLHVA+GAAGEN+KAK+
Sbjct: 21  PWAVDFMSWLKSSLLHGRYEEVNQYEEKAPYAKMAHPWPDHFFPLHVAMGAAGENAKAKV 200

Query: 246 IHSSIDLGSLSYASYQFTSD 265
           +H S D GS+SYAS+ FT+D
Sbjct: 201 VHDSWDGGSISYASFGFTAD 260


>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
           DZ-HRGP precursor, partial (8%)
          Length = 584

 Score = 29.3 bits (64), Expect = 0.73
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 174 LRALERHATVAAPWAVEFDNWLKEALLEGRYEDVNHYEQKAPHAKKAHPWPDHFYPLH 231
           L  LERH   A    ++F+    EA+  G Y +   Y    P+  +  P+P   YP H
Sbjct: 64  LSVLERHGKHAEIKYIKFNG---EAMDMGSYYNYGDYGYAPPYGMEFSPYPSLPYPQH 228


>TC19055 
          Length = 408

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   KDTFYISHGSPTLSIDESLVARKFLQSWKKEVFPPR 39
           +DT   SHG P LS+ +S V    + +W K +  P+
Sbjct: 73  EDTSDCSHGXPGLSMTKSDVTAAEISTWAKMITKPK 180


>AV778440 
          Length = 489

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 17/64 (26%), Positives = 29/64 (44%), Gaps = 2/64 (3%)
 Frame = -1

Query: 71  YGFPKPMYQLKYPAPGAPHLAKRVKELLKEGGFSRVDEDK--KRGLDHGAWVPLLLMYPE 128
           YG P P+  ++  +    HLA   K+ + EGG       K  +R  +  A +P   + P 
Sbjct: 366 YGQPTPVADVESASVHLKHLAAVAKDAVAEGGSIPGSRAKLWRRIREFNACIPYSGVLPN 187

Query: 129 ADIP 132
            ++P
Sbjct: 186 IEVP 175


>TC12042 similar to GB|CAB87983.1|7576235|ATH276134 Pex10p {Arabidopsis
           thaliana;} , partial (19%)
          Length = 582

 Score = 25.8 bits (55), Expect = 8.0
 Identities = 15/41 (36%), Positives = 19/41 (45%), Gaps = 3/41 (7%)
 Frame = +1

Query: 145 THHYNIGKALAPLKDEGVLI---VGSGSAVHNLRALERHAT 182
           THH + G  L  L +EG L       GS +    + E HAT
Sbjct: 10  THHTSAGHGLPVLNEEGTLASPDTDKGSWISESSSSEYHAT 132


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,139,738
Number of Sequences: 28460
Number of extensions: 75203
Number of successful extensions: 304
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of query: 267
length of database: 4,897,600
effective HSP length: 89
effective length of query: 178
effective length of database: 2,364,660
effective search space: 420909480
effective search space used: 420909480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)