BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0074.19
(2281 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427422 248 6e-66
BP054462 150 2e-36
BP055130 142 1e-35
AV766731 146 3e-35
BP046863 120 2e-27
AV772727 100 1e-24
BG662087 101 1e-21
AU089582 80 8e-21
BF177840 97 2e-20
AV429083 85 1e-16
BP042107 83 4e-16
BP048543 79 6e-15
AV410603 76 7e-14
BP055633 59 1e-08
AV426985 55 1e-07
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 55 1e-07
BP047039 53 5e-07
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 45 2e-04
BP042094 45 2e-04
BP044338 37 5e-04
>AV427422
Length = 417
Score = 248 bits (634), Expect = 6e-66
Identities = 107/138 (77%), Positives = 129/138 (92%)
Frame = +1
Query: 1620 TGLPKSKGFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRD 1679
TGLPKSKG+EAVLVVVDRLSK+SHF+ LKHPYTAK IA++FVREVVRLHG+P S++SDRD
Sbjct: 4 TGLPKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRD 183
Query: 1680 PIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWIS 1739
P+F+S+FW ELFK+QGTKLKMS+AYHPE+DGQTEV+NRCLE+YLRCF +D PKSW+HW+
Sbjct: 184 PLFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVP 363
Query: 1740 WAEFWYNTTFHSSIGQTP 1757
WAE+WYNT++H S GQTP
Sbjct: 364 WAEYWYNTSYHVSTGQTP 417
>BP054462
Length = 422
Score = 150 bits (380), Expect = 2e-36
Identities = 70/140 (50%), Positives = 105/140 (75%)
Frame = +1
Query: 1746 NTTFHSSIGQTPFEVVYGRQAPPIVKFLSNETKVAAVALELSERDEALRQLRGHLQKAQE 1805
N+ ++ S +PF+ +YGR+ P +++ + +K+AAV RDE L LR +L K+Q+
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1806 QMAIYANKKRRDLSFAVGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAY 1865
M YANKKRRD+ + +G+ VFLKL+P+R+ S+ K++N+KL+ R+YGP+ I AK+GAVAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1866 RLKLPAESKIHPVFHISLLK 1885
RL+LPA S++HPVFH+SLLK
Sbjct: 361 RLELPAHSRVHPVFHVSLLK 420
>BP055130
Length = 567
Score = 142 bits (357), Expect(2) = 1e-35
Identities = 61/112 (54%), Positives = 80/112 (70%)
Frame = +2
Query: 1627 GFEAVLVVVDRLSKYSHFILLKHPYTAKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHF 1686
GF ++VVVDRLSKY HF + YT+ +AE FV +V+LHG+P +++SDRD F S F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358
Query: 1687 WSELFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWI 1738
W FKL GT L MSS+YHP+TDGQTE +N+CLE YLRCF + P+ W ++
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
Score = 26.9 bits (58), Expect(2) = 1e-35
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = +3
Query: 1738 ISWAEFWYNTTFHSSIG 1754
+ WAE+ YN++F +SIG
Sbjct: 516 LPWAEYCYNSSFQTSIG 566
>AV766731
Length = 576
Score = 146 bits (369), Expect = 3e-35
Identities = 94/181 (51%), Positives = 110/181 (59%)
Frame = -2
Query: 2098 NGLQKGCS*YSYLQFSY*WFMQNRESLSCLGAS**DACEGSTSQYNHL*FFIGCFMQEPS 2157
N Q+ S*Y +FSY*WF+Q + +L C A * DA S +NH F I FMQ PS
Sbjct: 575 NASQRAYS*YGKKKFSY*WFVQGQTNLLCC*AC*CDA*NRSPG*FNHHQFLIRWFMQTPS 396
Query: 2158 C*QSNCIDQEN*RPGCSARFMHIQYTYGWTMQSWKT*GCARDFS*SFDKRLSYNCPYIYC 2217
* NCI E+*R SA++ + WTMQSWK * C RDFS SF++RL + C +YC
Sbjct: 395 S**GNCIIHES*RSQNSAKYTPLPSDN*WTMQSWKA*DCPRDFSGSFERRLQFKCHDVYC 216
Query: 2218 YDQWTL*RRLV**SVGLAVKNGN*GLYS*CYNF*IYYPFTL*KW*E*QG*ETSS*ND**R 2277
YDQW L*RR ** G AVKNG L+S*C F +L*K *E* G ET S*ND *R
Sbjct: 215 YDQWVL*RRFT**GSGPAVKNGRQWLHS*CCEFSNNNLCSL*KK*E**GRETFS*NDC*R 36
Query: 2278 S 2278
S
Sbjct: 35 S 33
>BP046863
Length = 580
Score = 120 bits (301), Expect = 2e-27
Identities = 60/115 (52%), Positives = 83/115 (72%)
Frame = +1
Query: 1772 FLSNETKVAAVALELSERDEALRQLRGHLQKAQEQMAIYANKKRRDLSFAVGEWVFLKLR 1831
F S + V AV + + ERD L +LRG+L KAQ+QM ANK RR + + VG WVFLKL+
Sbjct: 235 FCSIKLSVEAVNMLIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQ 414
Query: 1832 PHRQHSVVKRINQKLAARFYGPFQIEAKVGAVAYRLKLPAESKIHPVFHISLLKK 1886
P++ ++ +R NQKL+ RFYGPF++ +V VAY L L +ES++HPVFH+SLL+K
Sbjct: 415 PYKLQNLAQRKNQKLSPRFYGPFKVLERVVQVAY*LDLXSESRVHPVFHLSLLEK 579
>AV772727
Length = 528
Score = 100 bits (248), Expect(2) = 1e-24
Identities = 56/93 (60%), Positives = 61/93 (65%)
Frame = -1
Query: 2143 NHL*FFIGCFMQEPSC*QSNCIDQEN*RPGCSARFMHIQYTYGWTMQSWKT*GCARDFS* 2202
NHL FFI C MQE SC*Q + I E+*R G S R++HIQY Y WTMQ WK+ GC R FS
Sbjct: 525 NHLPFFIRCSMQESSC*QGHRIT*ES*RQGHSTRYVHIQYNY*WTMQKWKSKGCTRAFSG 346
Query: 2203 SFDKRLSYNCPYIYCYDQWTL*RRLV**SVGLA 2235
SFD RLS C I DQW L R V *S GLA
Sbjct: 345 SFD*RLSAKCCDI*YNDQWALYRGFVR*STGLA 247
Score = 32.0 bits (71), Expect(2) = 1e-24
Identities = 23/48 (47%), Positives = 31/48 (63%)
Frame = -2
Query: 2231 SVGLAVKNGN*GLYS*CYNF*IYYPFTL*KW*E*QG*ETSS*ND**RS 2278
++ L ++NG L *CYN * Y +L*K *E* +TSS*++ *RS
Sbjct: 260 ALALLIQNGRHALCF*CYNL*NNYSGSL*KK*E**STDTSS*DEC*RS 117
>BG662087
Length = 373
Score = 101 bits (252), Expect = 1e-21
Identities = 48/111 (43%), Positives = 72/111 (64%)
Frame = +1
Query: 1109 WRMCVDYRALNKATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKTA 1168
WRM VDY LNKA D YP+P +D+L+D + + S +D SGYHQI++H D +KTA
Sbjct: 22 WRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDKTA 201
Query: 1169 FRTHNGHYEYLVMPFGLMNAPATFQAVMNDIFRPYLRKFVLVFFDDILIYS 1219
F T +Y Y +PFGL NA AT+Q +M+ +F + + + V+ D++++ S
Sbjct: 202 FMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKS 354
>AU089582
Length = 383
Score = 79.7 bits (195), Expect(2) = 8e-21
Identities = 37/77 (48%), Positives = 50/77 (64%)
Frame = +2
Query: 1653 AKSIAEVFVREVVRLHGIPNSVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQT 1712
A A++++ E+V LHG+P S+ISDR F SHFW GT+LKMS+A+HP+TDGQ+
Sbjct: 11 ASQYAKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQS 190
Query: 1713 EVINRCLESYLRCFASD 1729
E + LE LR D
Sbjct: 191 ERTIQILEDMLRACVXD 241
Score = 39.7 bits (91), Expect(2) = 8e-21
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 1733 SWSHWISWAEFWYNTTFHSSIGQTPFEVVYGRQ 1765
SW ++S EF YN ++ SSI PFE +YGR+
Sbjct: 252 SWDQYLSLMEFAYNNSYRSSI*MAPFEALYGRR 350
>BF177840
Length = 410
Score = 97.4 bits (241), Expect = 2e-20
Identities = 44/91 (48%), Positives = 58/91 (63%)
Frame = +2
Query: 1673 SVISDRDPIFVSHFWSELFKLQGTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPK 1732
S++SDRD F+SHFW L+ GTKL S+ HP+TDGQTEV+N+ L + LR + K
Sbjct: 14 SIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLK 193
Query: 1733 SWSHWISWAEFWYNTTFHSSIGQTPFEVVYG 1763
W W+ EF YN HS+ +PFE+VYG
Sbjct: 194 MWETWLPHIEFAYNRVVHSTTKHSPFEIVYG 286
>AV429083
Length = 316
Score = 84.7 bits (208), Expect = 1e-16
Identities = 56/104 (53%), Positives = 64/104 (60%), Gaps = 1/104 (0%)
Frame = +1
Query: 204 C*MKWD*KT*T-QMFILILYWSML*VRKGR*EKLRTC*L**LNKV*NLMLLLIIP*WMGI 262
C KW+*KT + QMF+ ++YW ML VRK R* LR C L** NKV LLI+P WMGI
Sbjct: 4 CSRKWN*KTTSNQMFLPLIYWLMLYVRKER*NMLRMCWL***NKVWRRT*LLIVPCWMGI 183
Query: 263 A*LMK*IKPKMYSMLCLNEERLQMFIATIS*STDYVRLKWLMKP 306
*L + MYS L + E L M IATI * VRL W MKP
Sbjct: 184 V*LRTCTRENMYSTLWVEWE*LLMLIATIL*LMGSVRLNWWMKP 315
>BP042107
Length = 515
Score = 83.2 bits (204), Expect = 4e-16
Identities = 54/91 (59%), Positives = 58/91 (63%)
Frame = +2
Query: 1 CLLPHPSSNSTRF*LHLLRRSITPPPFHFLTKWSSPESSQALLL*TS*SIATAT*VKSIP 60
C+LP PSSN F*L R SITPPPFHFLTKW+ E L L S*SI TAT*V +
Sbjct: 239 CILPLPSSNLV*F*LP*SR*SITPPPFHFLTKWNLRELGLTLSLPAS*SIVTAT*VNLLQ 418
Query: 61 LFLYSPEFSREVISQTPSPSLLSSKVSVFTA 91
LFL FSREVISQT S + KVSV A
Sbjct: 419 LFL*WETFSREVISQTLSS*IHL*KVSVLKA 511
>BP048543
Length = 547
Score = 79.3 bits (194), Expect = 6e-15
Identities = 71/163 (43%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Frame = +3
Query: 1 CLLPHPSSNSTRF*LHLLRRSITPPPFHFLTKWSSPESSQALLL*TS*SIATAT*VKSIP 60
C LP P N T F + L ITP F FL WSS E LLL* S*SI + T V+
Sbjct: 63 CALPLP*PNLTIFWVLL*G*IITPQLFPFLNNWSSKELHLILLL*PS*SIVSVTWVE*TM 242
Query: 61 LFLYSPEFSREVISQTPSPSLLSSKVSVFTARFKEHYNFMMTC*LRDFY*TKSV----TG 116
LY +FSR +IS TP P L +VSV AR FMM RDF +V T
Sbjct: 243 PSLY*AKFSRGLISLTPQP*LHL*RVSVLMARSGAQLTFMMM*KPRDFNFR*TVLVLLTD 422
Query: 117 P*SMGYVNWGKQVLLWSCLGGFKGEGLNLMW*CTTPSSIACVK 159
*SM YV KQ L +SC G + LM+ CT S AC K
Sbjct: 423 S*SMSYVK*EKQGLRYSC*GKLRRS--ILMYKCTIQSLKACAK 545
>AV410603
Length = 162
Score = 75.9 bits (185), Expect = 7e-14
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = +1
Query: 1121 ATIPDKYPIPIVDELLDELNGASIFSKIDLKSGYHQIRVHEDDIEKTAFRTHNG 1174
+T+ D +P+P VDELLDEL G+ FSK+DL+SGYHQI V +D KT FRTH+G
Sbjct: 1 STVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>BP055633
Length = 528
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/93 (31%), Positives = 52/93 (55%)
Frame = -2
Query: 588 SWEKLKRALIARYGGRRLENPFEELSTLRQKGSVDEFVESFELLSSQVGRLPEDQYLGYF 647
+W K K A++ ++ +PF L L+Q+GSV+EFV FE + + + E+ Y+ F
Sbjct: 521 TWTKFKEAMLEQFQLTSNSSPFAALLALKQEGSVEEFVGQFERFAGMLKGIDEEHYMDIF 342
Query: 648 MSGLKPAIRRRVRTLNPGTRMEMMRIAKDVEEE 680
++GLK I ++ P + M++ A VE++
Sbjct: 341 VNGLKEEIAAEIKLYEPKSLTIMVKKALMVEQK 243
>AV426985
Length = 422
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/135 (25%), Positives = 64/135 (46%)
Frame = +1
Query: 778 EIAERRAKGLCFKCGGKYHPTLHKCPERSLRVLILGDGETVDEEGEIVMLEGEPEVSEED 837
E+ RR K LC+ C K+ HKCP + L +L L D D+ + +S++
Sbjct: 28 EMQLRREKNLCYWCDEKFSFN-HKCPNKYLMMLQLTDENDSDDTSN---QQVTTTISDDS 195
Query: 838 EAVVEYKLMGVLGRMEEHHTMKIEGQVDNVNLLVLIDSGASHNFISPAVTNALGLVITPI 897
+ + + T++ GQ+ N+++ VL+D G+S F+ P + L L I
Sbjct: 196 PVEDHHFSLNAMRGFTGVGTIRFTGQIGNISVQVLVDGGSSDCFLQPHIAKFLQLPIESK 375
Query: 898 ASRHIRLGDGHRVVT 912
+ + +G+G ++ T
Sbjct: 376 PNFKVLVGNGQKMET 420
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/43 (55%), Positives = 35/43 (80%), Gaps = 1/43 (2%)
Frame = +3
Query: 1845 KLAARFYGPFQIEAKVGAVAYRLKLPAE-SKIHPVFHISLLKK 1886
KL+ RF GPF++ +VG+V+YRL LP + S +HPVFH+S+L+K
Sbjct: 48 KLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLRK 176
>BP047039
Length = 527
Score = 53.1 bits (126), Expect = 5e-07
Identities = 43/79 (54%), Positives = 50/79 (62%)
Frame = -2
Query: 2203 SFDKRLSYNCPYIYCYDQWTL*RRLV**SVGLAVKNGN*GLYS*CYNF*IYYPFTL*KW* 2262
SF KRL + I YDQWTL*R LV**S+ + V+NG L+ * NF* Y + *K *
Sbjct: 523 SF*KRL*FE*LDI*YYDQWTL*RGLV**SIDIDVENGRQWLHP*SNNF*NNYFCSF*KR* 344
Query: 2263 E*QG*ETSS*ND**RSTGK 2281
+* G E SS*ND *RS K
Sbjct: 343 K**GREASS*NDC*RSIVK 287
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 44.7 bits (104), Expect = 2e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +2
Query: 1695 GTKLKMSSAYHPETDGQTEVINRCLESYLRCFASDHPKSWSHWISWAEFWYNTTFHSSIG 1754
G +++ SS HP+T+GQTE N+ + ++ + W + + YNT SSI
Sbjct: 62 GIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPIVLWSYNTMPQSSIK 241
Query: 1755 QTPFEVVYG 1763
+TPF + YG
Sbjct: 242 ETPF*LTYG 268
>BP042094
Length = 409
Score = 44.7 bits (104), Expect = 2e-04
Identities = 24/62 (38%), Positives = 29/62 (46%)
Frame = -1
Query: 1942 VTWEDNVVLAGQFPEFCLEDKAVPMEGGIDRNLNEEVGLVVNASVGQEENRPKVWQVYRR 2001
++W D L QFP F LEDKA + G DR +GQ RP W VY R
Sbjct: 409 ISWVDEPALKCQFPSFSLEDKAAAIGGXSDRIPGPVDYENQGEVLGQSSKRPTTWLVYSR 230
Query: 2002 KR 2003
+R
Sbjct: 229 RR 224
>BP044338
Length = 581
Score = 37.0 bits (84), Expect(2) = 5e-04
Identities = 19/43 (44%), Positives = 25/43 (57%)
Frame = -1
Query: 1971 DRNLNEEVGLVVNASVGQEENRPKVWQVYRRKRGKAAEVALAQ 2013
D N E+GL +PKVW+VY RK+GK AEV+ A+
Sbjct: 323 DSNTKGEMGL----------GKPKVWKVYERKKGKGAEVSQAK 225
Score = 37.0 bits (84), Expect = 0.034
Identities = 19/43 (44%), Positives = 25/43 (57%)
Frame = -1
Query: 314 DRNLNEEVGLVVNASVGQEENRPKVWQVYRRKRGKAAEVALAQ 356
D N E+GL +PKVW+VY RK+GK AEV+ A+
Sbjct: 323 DSNTKGEMGL----------GKPKVWKVYERKKGKGAEVSQAK 225
Score = 25.0 bits (53), Expect(2) = 5e-04
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -2
Query: 2016 *VLV*SNQGKGNKIMLD**FCYR-ERVASPSERTL*SFSGLLEFF*QHTLSQYLL*LSTS 2074
*V +*S++ G + ++ F YR E+ S E + *SFSGLLE LS + LS S
Sbjct: 202 *VSI*SSEVWGERGLMSIKFGYRREKEESF*EESH*SFSGLLE------LSLTIHHLSFS 41
Query: 2075 INTIAFLFLHFI 2086
I + F + I
Sbjct: 40 IPVLLLTFFNII 5
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.336 0.147 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,438,200
Number of Sequences: 28460
Number of extensions: 566465
Number of successful extensions: 4575
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 4333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4563
length of query: 2281
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2176
effective length of database: 1,909,300
effective search space: 4154636800
effective search space used: 4154636800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0074.19