TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.13
         (50 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP043859                                                               25  4.2
TC16667 similar to UP|O64594 (O64594) F17O7.4 (AT1G70420/F17O7_4...    25  4.2
AV411375                                                               23  9.5

>BP043859 
          Length = 551

 Score = 24.6 bits (52), Expect = 4.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 17 MEVEDEEQQAAALDNDNSFAFMDEFNRNCTLS 48
          +E E+EE QAA  +N+N+   +D   RN +L+
Sbjct: 10 IEREEEEAQAAIHNNNNNNDAIDFTARNSSLT 105


>TC16667 similar to UP|O64594 (O64594) F17O7.4 (AT1G70420/F17O7_4), partial
           (23%)
          Length = 953

 Score = 24.6 bits (52), Expect = 4.2
 Identities = 11/27 (40%), Positives = 16/27 (58%)
 Frame = +2

Query: 12  KIMVGMEVEDEEQQAAALDNDNSFAFM 38
           K+ +  EVEDEEQ     D +  F+F+
Sbjct: 179 KLKIENEVEDEEQVEEDDDEEEEFSFV 259


>AV411375 
          Length = 418

 Score = 23.5 bits (49), Expect = 9.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 18  EVEDEEQQAAALDNDNSF 35
           EVE EE++A+  D+D SF
Sbjct: 232 EVEVEEEEASYSDDDTSF 285


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.125    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,082
Number of Sequences: 28460
Number of extensions: 2350
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 50
length of database: 4,897,600
effective HSP length: 26
effective length of query: 24
effective length of database: 4,157,640
effective search space: 99783360
effective search space used: 99783360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)