TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0074.12
         (369 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP042991                                                               33  0.099
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog...    30  0.49
TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG...    30  0.64
BP070163                                                               29  1.1
TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like pro...    29  1.4
BP038045                                                               28  1.9
TC14775 PIR|S14181|S14181 DNA-directed RNA polymerase  largest c...    28  1.9
TC12847 similar to GB|AAM66074.1|21595125|AY088542 endosperm-spe...    28  2.4
BP073405                                                               28  2.4
TC18924 homologue to UP|Q94FN3 (Q94FN3) Phosphatidylinositol tra...    28  2.4
TC11431                                                                28  2.4
AV769784                                                               28  3.2
TC8501 similar to UP|Q9FFY9 (Q9FFY9) H-protein promoter binding ...    23  3.5
BP034325                                                               27  5.4
BP069808                                                               27  5.4
TC17761 weakly similar to UP|Q38889 (Q38889) OBP33pep (Fragment)...    27  5.4
TC8969                                                                 27  7.1
CB828598                                                               27  7.1
AU089227                                                               27  7.1

>BP042991 
          Length = 534

 Score = 32.7 bits (73), Expect = 0.099
 Identities = 25/81 (30%), Positives = 35/81 (42%), Gaps = 19/81 (23%)
 Frame = +1

Query: 10  SILSAQRDPRSIFYSPPS----QPNTS-----PY-YCHNVPSYYPQTHSS---------L 50
           S  S+   P   +YSP      QPN S     PY Y H+ P +  Q   S         L
Sbjct: 292 SFTSSYPQPAPDYYSPSQPYIPQPNVSSQHYYPYIYPHSSPPHDTQLSFSSPRAKSQPKL 471

Query: 51  QLSEFNGENPEYWLFMADCYF 71
           +++ FNG +P  WL   + +F
Sbjct: 472 KITVFNGSDPTMWLLNTETFF 534


>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
           protein 1 precursor, partial (43%)
          Length = 890

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 12  LSAQRDPRSIFYSPPSQPNTSPYYCHNVPSYYPQTHSS 49
           LS QR   S +  PP  P TSP +  + PS  P T +S
Sbjct: 176 LSRQRCSSSPWLLPPQTPTTSPAFSPSTPSSPPSTTTS 289


>TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG
           {Arabidopsis thaliana;} , partial (24%)
          Length = 1048

 Score = 30.0 bits (66), Expect = 0.64
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 78  WETRFQLLAIHLGGKALTWFRLSHQQIHSWEEFKVAFRLYFV 119
           W  R Q ++IH+    + WFR++ + I+    F + +R Y +
Sbjct: 557 WTHRCQEISIHIPANRVYWFRMTLECINLSVTFDIKYRHYLI 432


>BP070163 
          Length = 257

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 40  PSYYPQTHSSLQLSEFNGENPEYWLFMADCYFLQNPYPWETRFQLLAIHL 89
           P+YY   +SS  L +  G +    L +   Y L   +PW   F+L+  H+
Sbjct: 102 PNYYIIQYSSNYLVQ*CGGHSPEKLILDPIYILPKMFPWTINFKLIIPHI 251


>TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like protein III,
           complete
          Length = 2302

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 27/95 (28%), Positives = 42/95 (43%)
 Frame = +3

Query: 228 DVNKTFVLKTTDLVLRNPRQVFGNLLEGKFVQKNNEAQFEKHFDKLLMQFHNSSTTVDVQ 287
           D NK   + T D  +R   Q F      KF      A+  +H D       +S+T +DVQ
Sbjct: 624 DPNKLMQVTTMDRYVRYHVQEFEKSFAIKFPACTMAAK--RHID-------SSTTILDVQ 776

Query: 288 KIGVPCPKVFEKMLVTRNTRICVDNTFEKLLETYI 322
            +G+       + L+TR  ++  DN  E L + +I
Sbjct: 777 GVGLKNFTKSARELITRLQKVDGDNYPETLCQMFI 881


>BP038045 
          Length = 556

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 30  NTSPYYCHNVPSYYPQTHSSLQLSEFNGENPEYWLFMADCYFLQNP--YPWETRFQL 84
           +T PYYC  +P     ++S L   E   +NP  +L      F      YP  TRF L
Sbjct: 515 STVPYYCKQIP*PNSFSYSQLLADEAAPKNPSRFLTKFTILFPSYVILYPMTTRFVL 345


>TC14775 PIR|S14181|S14181 DNA-directed RNA polymerase  largest chain       
                    (isoform B1) - soybean (fragment) {Glycine
           max;}  , partial (22%)
          Length = 848

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 17/43 (39%), Positives = 23/43 (52%), Gaps = 3/43 (6%)
 Frame = +1

Query: 23  YSP--PSQPNTSPYYCHNVPSYYPQTHSSLQLSEFN-GENPEY 62
           YSP  P+   TSP Y    PSY P + +    S +N G +P+Y
Sbjct: 190 YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDY 318



 Score = 28.1 bits (61), Expect = 2.4
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 18 PRSIFYSP--PSQPNTSPYYCHNVPSYYPQT 46
          P S  YSP  PS   TSP Y    PSY PQ+
Sbjct: 34 PTSPGYSPTSPSYSPTSPSYSPTSPSYNPQS 126


>TC12847 similar to GB|AAM66074.1|21595125|AY088542 endosperm-specific
           protein-like protein {Arabidopsis thaliana;} , partial
           (11%)
          Length = 245

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 9   SSILSAQRDPRSIFYSPPSQPNTSPYYCHNVPSYYPQTHSS 49
           SS+LS    P      PPS P TSP +    P+  P T SS
Sbjct: 76  SSLLSPSPPP------PPSPPTTSPRFSPPTPTTAPTTPSS 180


>BP073405 
          Length = 400

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 18/63 (28%), Positives = 29/63 (45%)
 Frame = -3

Query: 69  CYFLQNPYPWETRFQLLAIHLGGKALTWFRLSHQQIHSWEEFKVAFRLYFVYNRPNGFST 128
           CYFL+   PW+ +FQLL +    ++     +    + S  + +   R Y +  R   FST
Sbjct: 383 CYFLEICLPWKYKFQLLILQSHNQSCEIQNIGLWMLQSSTQVQPLCRHYSIQER--FFST 210

Query: 129 TTV 131
             V
Sbjct: 209 IQV 201


>TC18924 homologue to UP|Q94FN3 (Q94FN3) Phosphatidylinositol transfer-like
           protein II, complete
          Length = 1976

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 26/95 (27%), Positives = 42/95 (43%)
 Frame = +3

Query: 228 DVNKTFVLKTTDLVLRNPRQVFGNLLEGKFVQKNNEAQFEKHFDKLLMQFHNSSTTVDVQ 287
           D  K   + T D  ++   + F    + KF   +  A+  KH D+       S+T +DVQ
Sbjct: 501 DATKLMQVTTMDRYIKYHVKEFERTFDLKFAACSIAAK--KHIDQ-------STTILDVQ 653

Query: 288 KIGVPCPKVFEKMLVTRNTRICVDNTFEKLLETYI 322
            +G+       + L+TR  +I  DN  E L   +I
Sbjct: 654 GVGLKNFNKHARELITRLQKIDGDNYPETLNRMFI 758


>TC11431 
          Length = 551

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 17  DPRSIFYSPPSQPNTSPYYCHNVPSYYPQTHSSLQLSEFNGENPEY 62
           DP+  +  P SQ N    + HN     P +   LQL  F G+N +Y
Sbjct: 364 DPKPSYNRPRSQTNN*E*HTHN-----PYSLRLLQLHSFRGQNHQY 242


>AV769784 
          Length = 535

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +3

Query: 22  FYSPPSQPNTSPYYCHNVPSYYPQTHSSLQL 52
           F+  P  P+TS    H+ P Y PQ+HSS+ +
Sbjct: 306 FHHLPPSPSTSSQ--HSPPPYPPQSHSSVPI 392


>TC8501 similar to UP|Q9FFY9 (Q9FFY9) H-protein promoter binding factor-1
           (Telomeric DNA-binding protein 1), partial (5%)
          Length = 616

 Score = 23.5 bits (49), Expect(2) = 3.5
 Identities = 10/34 (29%), Positives = 16/34 (46%)
 Frame = -3

Query: 45  QTHSSLQLSEFNGENPEYWLFMADCYFLQNPYPW 78
           Q    L +  F+    E+WLF+     +  P+PW
Sbjct: 407 QAEFLLDIF*FSPSEAEFWLFIGAD*SIGPPWPW 306



 Score = 22.3 bits (46), Expect(2) = 3.5
 Identities = 11/30 (36%), Positives = 13/30 (42%)
 Frame = -2

Query: 18  PRSIFYSPPSQPNTSPYYCHNVPSYYPQTH 47
           PR+   + P Q   S   CHN  S  P  H
Sbjct: 474 PRTSNQNSPLQKLNSMSICHNFSSRVPLRH 385


>BP034325 
          Length = 417

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 2   VLNYDVLSSILSAQRDPRSIFYSPPSQPNTSPYYCHNVPS 41
           +L  D  S + +AQ  P     S P QP++ P   HN  S
Sbjct: 225 LLCLDFRSGMCAAQNHPHRTHTSKPHQPHSIPTATHNCKS 344


>BP069808 
          Length = 291

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 43  YPQTHSSLQLSEFNGENPEYWLFMADCYFLQNPYPWETRFQLL---AIHL 89
           Y Q   SLQ + +   + EY L      F+  PYPW   +  L   +IHL
Sbjct: 114 YSQKGLSLQRAGWLRHSYEYLLHSLPSSFILYPYPWSLSYNNLL*SSIHL 263


>TC17761 weakly similar to UP|Q38889 (Q38889) OBP33pep (Fragment), partial
           (27%)
          Length = 549

 Score = 26.9 bits (58), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 87  IHLGGKALTWFRLSHQQIHSWEEFKV 112
           +H GG  + +   SHQ+ H W+ F V
Sbjct: 176 MHQGGLKMNFHSQSHQRNHHWQHFLV 99


>TC8969 
          Length = 892

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -1

Query: 325 LLDWQRMRPMNLTSEIALSSLSGPG 349
           +L+W+ M+P N++ +I L++L+  G
Sbjct: 865 ILNWRLMQPPNVSQKITLNNLAAKG 791


>CB828598 
          Length = 559

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 15/47 (31%), Positives = 22/47 (45%)
 Frame = -1

Query: 107 WEEFKVAFRLYFVYNRPNGFSTTTVKYGFEKSSLVEIQRSSEQVSPH 153
           W+  K   ++  V  + NG +TTT + G  +SSL    R     S H
Sbjct: 352 WQASKTLLKVN*VITKWNGTTTTTERCGCTRSSLRARYRRRRHSSAH 212


>AU089227 
          Length = 447

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -1

Query: 60  PEYWLFMADCYFLQNPYPWETRFQLLAIHLGGKALTWFRLSHQQIHSW 107
           PE   F +  +F  +P     R   + + LGG  ++     H  +HSW
Sbjct: 246 PELVRFSSFIFFXSSPSVTXLR*SEVFLVLGGSLVSLILCKHASVHSW 103


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,824,356
Number of Sequences: 28460
Number of extensions: 105070
Number of successful extensions: 636
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of query: 369
length of database: 4,897,600
effective HSP length: 92
effective length of query: 277
effective length of database: 2,279,280
effective search space: 631360560
effective search space used: 631360560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)