TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0073.3
         (191 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18675 similar to UP|RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S...   375  e-105
TC9120 similar to UP|RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S7...   351  4e-98
TC16402 similar to UP|RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S...   327  1e-90
AW720221                                                              161  4e-57
BP057813                                                              108  8e-25
TC18205 similar to UP|RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S...    57  9e-13
BP064614                                                               33  0.024
TC10390 similar to UP|Q9LHJ7 (Q9LHJ7) RING zinc finger protein-l...    27  2.9
CN825587                                                               26  3.8

>TC18675 similar to UP|RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S7, complete
          Length = 705

 Score =  375 bits (962), Expect = e-105
 Identities = 191/191 (100%), Positives = 191/191 (100%)
 Frame = +2

Query: 1   MYTSRKKIHKDKDAEPTEFEETVGQALFDLENTHQELKSDLKDLYINSAVQVDVSGNRKA 60
           MYTSRKKIHKDKDAEPTEFEETVGQALFDLENTHQELKSDLKDLYINSAVQVDVSGNRKA
Sbjct: 62  MYTSRKKIHKDKDAEPTEFEETVGQALFDLENTHQELKSDLKDLYINSAVQVDVSGNRKA 241

Query: 61  VVIHVPYRLRKAFRKVHVKLVRELEKKFSGKDVILIATRRILRPPKKGSAAQRPRTRTLT 120
           VVIHVPYRLRKAFRKVHVKLVRELEKKFSGKDVILIATRRILRPPKKGSAAQRPRTRTLT
Sbjct: 242 VVIHVPYRLRKAFRKVHVKLVRELEKKFSGKDVILIATRRILRPPKKGSAAQRPRTRTLT 421

Query: 121 AVHEAMLEDVVLPAEIVGKRVRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGK 180
           AVHEAMLEDVVLPAEIVGKRVRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGK
Sbjct: 422 AVHEAMLEDVVLPAEIVGKRVRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGK 601

Query: 181 DVVFEYPITEA 191
           DVVFEYPITEA
Sbjct: 602 DVVFEYPITEA 634


>TC9120 similar to UP|RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S7, partial
           (97%)
          Length = 821

 Score =  351 bits (901), Expect = 4e-98
 Identities = 175/191 (91%), Positives = 185/191 (96%)
 Frame = +1

Query: 1   MYTSRKKIHKDKDAEPTEFEETVGQALFDLENTHQELKSDLKDLYINSAVQVDVSGNRKA 60
           M+TSRKKIHKDKD EPTEFEETVGQALFDLENT+ ELKS+LKDLYINSAVQ+DVSGNRKA
Sbjct: 70  MFTSRKKIHKDKDVEPTEFEETVGQALFDLENTNHELKSELKDLYINSAVQIDVSGNRKA 249

Query: 61  VVIHVPYRLRKAFRKVHVKLVRELEKKFSGKDVILIATRRILRPPKKGSAAQRPRTRTLT 120
           VVIH+PYRLRK FRK+H+KLVRELEKKFSGKDVILIATRRI+RPPKKGSAAQRPR+RTLT
Sbjct: 250 VVIHIPYRLRKGFRKIHLKLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLT 429

Query: 121 AVHEAMLEDVVLPAEIVGKRVRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGK 180
           AVHEAMLEDVVLPAEIVGKRV YRVDG+KIMKVFLDPKERNNTEYKLETFAAVYRK SGK
Sbjct: 430 AVHEAMLEDVVLPAEIVGKRVMYRVDGTKIMKVFLDPKERNNTEYKLETFAAVYRKFSGK 609

Query: 181 DVVFEYPITEA 191
           DVVFEYP TEA
Sbjct: 610 DVVFEYPNTEA 642


>TC16402 similar to UP|RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S7, partial
           (97%)
          Length = 1044

 Score =  327 bits (837), Expect = 1e-90
 Identities = 160/191 (83%), Positives = 178/191 (92%)
 Frame = +3

Query: 1   MYTSRKKIHKDKDAEPTEFEETVGQALFDLENTHQELKSDLKDLYINSAVQVDVSGNRKA 60
           M+TSRKKI KD  AEPTEFEETV Q LFDLENT+ E+KSDLKDLYIN A+QVDV+GNRKA
Sbjct: 84  MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 263

Query: 61  VVIHVPYRLRKAFRKVHVKLVRELEKKFSGKDVILIATRRILRPPKKGSAAQRPRTRTLT 120
           VVI+VPYRLRK+FRK+H +LVRELEKKFSGKDV+ IATRRI+RPPKKG+A QRPRTRTLT
Sbjct: 264 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 443

Query: 121 AVHEAMLEDVVLPAEIVGKRVRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGK 180
           AVH+AMLEDVV P+EIVGKR+RYR+DGSKIMKVFLDPKERNN EYKLETF+ VYRKL+GK
Sbjct: 444 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 623

Query: 181 DVVFEYPITEA 191
           DVVFEYPITEA
Sbjct: 624 DVVFEYPITEA 656


>AW720221 
          Length = 463

 Score =  161 bits (408), Expect(2) = 4e-57
 Identities = 79/86 (91%), Positives = 85/86 (97%)
 Frame = +2

Query: 41  LKDLYINSAVQVDVSGNRKAVVIHVPYRLRKAFRKVHVKLVRELEKKFSGKDVILIATRR 100
           LKDLYINSAVQ+DVSGNRKAVVIH+PYRLRK FRK+H+KLVRELEKKFSGKDVILIATRR
Sbjct: 206 LKDLYINSAVQIDVSGNRKAVVIHIPYRLRKGFRKIHLKLVRELEKKFSGKDVILIATRR 385

Query: 101 ILRPPKKGSAAQRPRTRTLTAVHEAM 126
           I+RPPKKGSAAQRPR+RTLTAVHEAM
Sbjct: 386 IVRPPKKGSAAQRPRSRTLTAVHEAM 463



 Score = 75.5 bits (184), Expect(2) = 4e-57
 Identities = 36/42 (85%), Positives = 38/42 (89%)
 Frame = +3

Query: 1   MYTSRKKIHKDKDAEPTEFEETVGQALFDLENTHQELKSDLK 42
           M+TSRKKIHKDKD EPTEFEETVGQALFDLENT+ ELKS  K
Sbjct: 87  MFTSRKKIHKDKDVEPTEFEETVGQALFDLENTNHELKSS*K 212


>BP057813 
          Length = 570

 Score =  108 bits (269), Expect = 8e-25
 Identities = 70/127 (55%), Positives = 78/127 (61%), Gaps = 31/127 (24%)
 Frame = -3

Query: 60  AVVIHVPYRLRKAFRKVHVKLV-------RELEKKF------------------------ 88
           AVVIHVP RLRK+F K+ V+L+       R L  +                         
Sbjct: 550 AVVIHVP-RLRKSFSKIRVRLLDLSVTLRRSLVARLY*LSYSSVLRNFFVTLPN*LLLSI 374

Query: 89  SGKDVILIATRRILRPPKKGSAAQRPRTRTLTAVHEAMLEDVVLPAEIVGKRVRYRVDGS 148
              DVILIATRRILRPP KG   QRP T+TL AV+EAMLED+VL AEIVGKRVRYRVDGS
Sbjct: 373 CPSDVILIATRRILRPPMKGFIVQRPCTQTLRAVYEAMLEDIVLSAEIVGKRVRYRVDGS 194

Query: 149 KIMKVFL 155
           KIMKV L
Sbjct: 193 KIMKVEL 173


>TC18205 similar to UP|RS7_AVIMR (Q9ZNS1) 40S ribosomal protein S7, partial
           (27%)
          Length = 547

 Score = 57.4 bits (137), Expect(2) = 9e-13
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +2

Query: 101 ILRPPKKGSAAQRPRTRTLTAVHEAMLEDVVLPAEIVGKR 140
           +LR PK+GS  Q  RTRTLTAV+EAML DV+ PAEIVGKR
Sbjct: 155 LLRLPKEGSTVQPLRTRTLTAVYEAMLGDVISPAEIVGKR 274



 Score = 30.8 bits (68), Expect(2) = 9e-13
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 14/43 (32%)
 Frame = +3

Query: 141 VRYRVDGSKIMK------------VFLDPKE--RNNTEYKLET 169
           VR+RVDGSKIMK            +   PK+    NT+YKLET
Sbjct: 273 VRFRVDGSKIMKECNSLICIATRRILRPPKKVLLYNTQYKLET 401



 Score = 29.3 bits (64), Expect = 0.45
 Identities = 13/15 (86%), Positives = 14/15 (92%)
 Frame = +3

Query: 93  VILIATRRILRPPKK 107
           +I IATRRILRPPKK
Sbjct: 321 LICIATRRILRPPKK 365


>BP064614 
          Length = 473

 Score = 33.5 bits (75), Expect = 0.024
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 154 FLDP---KERNNTEYKLETFAAVYRKLSGKDVVFEYP 187
           FL P   K  NNT  KLET AAVYRKL+G+ +    P
Sbjct: 246 FLGPQGTKLPNNTA*KLETSAAVYRKLTGQMLCLNLP 136



 Score = 25.4 bits (54), Expect = 6.6
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 150 IMKVFLDPKERN 161
           I KVFLDPKERN
Sbjct: 257 IGKVFLDPKERN 222


>TC10390 similar to UP|Q9LHJ7 (Q9LHJ7) RING zinc finger protein-like,
           partial (44%)
          Length = 722

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 19/72 (26%), Positives = 36/72 (49%)
 Frame = +2

Query: 84  LEKKFSGKDVILIATRRILRPPKKGSAAQRPRTRTLTAVHEAMLEDVVLPAEIVGKRVRY 143
           L  KF       ++ R  LR  ++  A   PR+R +   +  M+   ++PAE+ G  V+Y
Sbjct: 251 LRSKFFRLSRCGVSRREPLRALQRKGA---PRSRVILLQNARMMRFALMPAEMKG*SVQY 421

Query: 144 RVDGSKIMKVFL 155
             + S ++++ L
Sbjct: 422 AGNLSTLLRMCL 457


>CN825587 
          Length = 663

 Score = 26.2 bits (56), Expect = 3.8
 Identities = 16/46 (34%), Positives = 21/46 (44%)
 Frame = +2

Query: 80  LVRELEKKFSGKDVILIATRRILRPPKKGSAAQRPRTRTLTAVHEA 125
           L    + K   KD I  A  RI+  P+K +A      + L A HEA
Sbjct: 395 LAARRDLKEISKDEISDALERIIAGPEKKNAVVSEEKKKLVAYHEA 532


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,186,527
Number of Sequences: 28460
Number of extensions: 21455
Number of successful extensions: 120
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of query: 191
length of database: 4,897,600
effective HSP length: 85
effective length of query: 106
effective length of database: 2,478,500
effective search space: 262721000
effective search space used: 262721000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)