TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0072a.9
         (239 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV408058                                                               68  2e-12
TC8970                                                                 55  1e-08
BP081080                                                               42  1e-04
TC14449 similar to UP|O24078 (O24078) Protein phosphatase 2C, pa...    30  0.49
CB827867                                                               29  0.83
BP075244                                                               28  1.4
TC8150 similar to UP|AAR88248 (AAR88248) Mitochondrial citrate s...    28  1.4
BG662008                                                               28  1.8
TC13901 similar to UP|Q9FYU7 (Q9FYU7) UDP-glucose:sinapate gluco...    26  5.4
BP038197                                                               26  5.4
AV774522                                                               25  9.2
AW719736                                                               25  9.2

>AV408058 
          Length = 386

 Score = 67.8 bits (164), Expect = 2e-12
 Identities = 33/37 (89%), Positives = 34/37 (91%)
 Frame = +1

Query: 168 QMSSMDSFVILRRSGKTRSEMTTTEPSTWTRTSYMTR 204
           +MSSMDSFVILR SGKTRSEMTTTEP TWTRTS MTR
Sbjct: 244 KMSSMDSFVILRHSGKTRSEMTTTEPLTWTRTSCMTR 354


>TC8970 
          Length = 609

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 29/52 (55%), Positives = 35/52 (66%), Gaps = 6/52 (11%)
 Frame = +2

Query: 161 GYVCLF------CQMSSMDSFVILRRSGKTRSEMTTTEPSTWTRTSYMTRWG 206
           G+VC+F      C  +    F  +RRSG+TRSEMTTTEPSTWTRTS+  R G
Sbjct: 32  GFVCMFVFGRSACCQTFNR*FKKVRRSGRTRSEMTTTEPSTWTRTSWKIR*G 187


>BP081080 
          Length = 458

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +1

Query: 18  GLGKEKDDHCSLVFALFIDGISDCVTYLQ 46
           GL KE + HC+ +F LF+DGISD V YLQ
Sbjct: 364 GLEKENNLHCNSIFTLFVDGISDGVNYLQ 450


>TC14449 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (63%)
          Length = 1000

 Score = 29.6 bits (65), Expect = 0.49
 Identities = 16/48 (33%), Positives = 27/48 (55%)
 Frame = +3

Query: 3   GDRHYRQWLLKEGREGLGKEKDDHCSLVFALFIDGISDCVTYLQEINL 50
           GDRH +QW+  E    + K + +H  L+ A   DG+ D V+  + ++L
Sbjct: 453 GDRHLKQWVTAEPETKVIKIEPEHDLLILA--SDGLWDKVSNQEAVDL 590


>CB827867 
          Length = 471

 Score = 28.9 bits (63), Expect = 0.83
 Identities = 14/26 (53%), Positives = 18/26 (68%)
 Frame = -3

Query: 48  INLLDGFLLEGTPLSVAYVKFPCMGS 73
           INL +G LL G+ L+VA  +FP  GS
Sbjct: 469 INLFNGVLLGGSILTVALARFPRSGS 392


>BP075244 
          Length = 526

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 150 FDPCTCYLCLGGYVCLFCQMSSMDSFV 176
           F P  C+ C G   CLFCQ   + SFV
Sbjct: 433 FAPLDCWCCYG---CLFCQCCLLFSFV 362


>TC8150 similar to UP|AAR88248 (AAR88248) Mitochondrial citrate synthase,
            partial (98%)
          Length = 1956

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 15/35 (42%), Positives = 18/35 (50%)
 Frame = -2

Query: 164  CLFCQMSSMDSFVILRRSGKTRSEMTTTEPSTWTR 198
            CLF QM     F+  RRSGKT  E   T    +T+
Sbjct: 1736 CLFIQMLPQS*FMQFRRSGKTNCEGCITTLYLYTK 1632


>BG662008 
          Length = 457

 Score = 27.7 bits (60), Expect = 1.8
 Identities = 13/37 (35%), Positives = 20/37 (53%)
 Frame = +2

Query: 41  CVTYLQEINLLDGFLLEGTPLSVAYVKFPCMGSFEEF 77
           C   +  + L +G L+ G+ LSVA  +FP  G   +F
Sbjct: 236 CEVSVGGVGLFNGALVGGSFLSVALARFPRSGGLNQF 346


>TC13901 similar to UP|Q9FYU7 (Q9FYU7) UDP-glucose:sinapate
           glucosyltransferase  , partial (16%)
          Length = 558

 Score = 26.2 bits (56), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 146 LCQGFDPCTCYLCLGGYVCLFCQMSSMDSF 175
           LC   D C CYLC     CL    S +++F
Sbjct: 470 LCYVLDSCLCYLC-----CLSSLFSKINTF 544


>BP038197 
          Length = 478

 Score = 26.2 bits (56), Expect = 5.4
 Identities = 10/32 (31%), Positives = 16/32 (49%)
 Frame = +2

Query: 63  VAYVKFPCMGSFEEFQGEEGIECEGTFEENAG 94
           + ++ F   G FEEF  E+  +CE    +  G
Sbjct: 287 IVFLWFCSKGDFEEFPEEQAFDCEQVLGDRPG 382


>AV774522 
          Length = 541

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 15/54 (27%), Positives = 23/54 (41%)
 Frame = +2

Query: 168 QMSSMDSFVILRRSGKTRSEMTTTEPSTWTRTSYMTRWGDCVSMELEDEMMTSY 221
           ++S   + V L +  KTR      +  T   T+ + + GDCV M   D     Y
Sbjct: 170 RISESKALVFLFQMAKTRPGKKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPY 331


>AW719736 
          Length = 379

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 72  GSFEEFQGEEGIECEGTFEENAG 94
           G FEE  G E   CEG  EE AG
Sbjct: 236 G*FEELCGFEEEVCEGRVEEQAG 304


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.141    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,585,664
Number of Sequences: 28460
Number of extensions: 65143
Number of successful extensions: 390
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of query: 239
length of database: 4,897,600
effective HSP length: 87
effective length of query: 152
effective length of database: 2,421,580
effective search space: 368080160
effective search space used: 368080160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)