BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0072a.11
(117 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 55 1e-09
BP030058 52 2e-09
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 54 5e-09
BP043633 50 1e-07
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 48 5e-07
BP033767 47 1e-06
AV427333 47 1e-06
TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich... 46 2e-06
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 46 2e-06
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras... 44 5e-06
AU251550 44 5e-06
TC19908 similar to GB|CAA60022.1|791150|VURNEXT26 extensin-like ... 44 7e-06
BP034485 44 7e-06
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 44 7e-06
TC19911 weakly similar to PIR|A44805|A44805 eggshell protein pre... 44 7e-06
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 44 9e-06
AW720113 42 2e-05
AV410336 42 2e-05
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 42 2e-05
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 42 3e-05
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 54.7 bits (130), Expect = 4e-09
Identities = 34/74 (45%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
Frame = +1
Query: 8 DGGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGG---GGGGGDGGGNGCG 64
+GG+ GG S G GG GGGG GG GG GG GGDGGG+ G
Sbjct: 385 EGGYGGGGGSRGYGGGGGGYGGGG--------------GGGYGGRREGGYGGDGGGSRYG 522
Query: 65 SGGGGGCGGLMWWR 78
SGGGGG G WR
Sbjct: 523 SGGGGGGGN---WR 555
Score = 52.8 bits (125), Expect(2) = 1e-09
Identities = 31/63 (49%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 12 ADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGG-DGGGNGCGSGGGGG 70
A GG G G GG GGGG G GG GGGG G GGG G G GGGGG
Sbjct: 316 ARGGGGGGGGRGGGGYGGGG----------GRREGGYGGGGGSRGYGGGGGGYGGGGGGG 465
Query: 71 CGG 73
GG
Sbjct: 466 YGG 474
Score = 42.7 bits (99), Expect = 2e-05
Identities = 22/57 (38%), Positives = 27/57 (46%)
Frame = +1
Query: 17 SGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSGGGGGCGG 73
S +G G+ G + + + G GG GGGG GG GG G GGGGG G
Sbjct: 250 SAIEGMNGNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRG 420
Score = 23.5 bits (49), Expect(2) = 1e-09
Identities = 6/7 (85%), Positives = 7/7 (99%)
Frame = +3
Query: 77 WRRRWWR 83
W+RRWWR
Sbjct: 519 WQRRWWR 539
>BP030058
Length = 455
Score = 51.6 bits (122), Expect(2) = 9e-09
Identities = 29/66 (43%), Positives = 30/66 (44%)
Frame = +1
Query: 8 DGGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSGG 67
D G G G G GG+ GGG GGD GGGGG G G G G G G
Sbjct: 259 DKGLQFCGQEGYFGGGGEGGGGG---------------GGDGGGGGGDGHGSGGGGGEGD 393
Query: 68 GGGCGG 73
GGG GG
Sbjct: 394 GGGGGG 411
Score = 51.2 bits (121), Expect(2) = 2e-09
Identities = 28/48 (58%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +1
Query: 28 GGGGVVIEKVVMVEGDCSGGDSGGGGGGGD---GGGNGCGSGGGGGCG 72
GGGG + EG GG GGGGGGGD GGG+G GSGGGGG G
Sbjct: 247 GGGGDKGLQFCGQEGYFGGGGEGGGGGGGDGGGGGGDGHGSGGGGGEG 390
Score = 24.3 bits (51), Expect(2) = 2e-09
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 76 WWRRRWWRVVVVTSTV 91
WW R WWR VT+ V
Sbjct: 378 WW*RGWWRRWWVTTGV 425
Score = 23.5 bits (49), Expect = 9.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 85 VVVTSTVVATAVVTVVVVVVVEAVVVE 111
VV VVA A+ VVVVVV+ +V E
Sbjct: 323 VVGEMAVVAVAMGMAVVVVVVKGMVEE 403
Score = 21.9 bits (45), Expect(2) = 3.1
Identities = 7/9 (77%), Positives = 7/9 (77%), Gaps = 1/9 (11%)
Frame = +3
Query: 76 WWRR-RWWR 83
WW R RWWR
Sbjct: 324 WWGRWRWWR 350
Score = 21.6 bits (44), Expect(2) = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 85 VVVTSTVVATAVVTVVVVVVVEAVVVEGDC 114
+ V + + AVV VVV +VE VV C
Sbjct: 335 MAVVAVAMGMAVVVVVVKGMVEEVVGHHRC 424
Score = 21.6 bits (44), Expect(2) = 9e-09
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +3
Query: 76 WWRRRWWRVVVVTST 90
WWRR W V T T
Sbjct: 393 WWRRWWVTTGVSTRT 437
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 54.3 bits (129), Expect = 5e-09
Identities = 31/65 (47%), Positives = 31/65 (47%)
Frame = +3
Query: 9 GGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSGGG 68
GG A GG G G GG GGGG GG GGG GGG G G G GGG
Sbjct: 279 GGGAGGGGRGGGGYGGGGYGGGGYG-----------GGGRGGGGYGGGGGYGGSGGYGGG 425
Query: 69 GGCGG 73
GG GG
Sbjct: 426 GGYGG 440
Score = 52.4 bits (124), Expect = 2e-08
Identities = 31/65 (47%), Positives = 31/65 (47%)
Frame = +3
Query: 9 GGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSGGG 68
GG GG G G GG GGGG G G SGG GGGG GG G G G G
Sbjct: 309 GGGYGGGGYGGGGYGGGGRGGGGY--------GGGGGYGGSGGYGGGGGYGGGGRGGGRG 464
Query: 69 GGCGG 73
GG GG
Sbjct: 465 GGGGG 479
Score = 40.8 bits (94), Expect = 6e-05
Identities = 22/37 (59%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +3
Query: 40 VEGDCSGGDSGGGGGGGDG-GGNGCGSG--GGGGCGG 73
V+G GG +GGGG GG G GG G G G GGGG GG
Sbjct: 261 VQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGG 371
Score = 39.7 bits (91), Expect = 1e-04
Identities = 22/48 (45%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = +3
Query: 28 GGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSG--GGGGCGG 73
G G ++ G GG GGG GGG GG G G G GGGG GG
Sbjct: 243 GPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGG 386
Score = 35.8 bits (81), Expect = 0.002
Identities = 23/51 (45%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
Frame = +3
Query: 26 SDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDG-GGNGCGSG--GGGGCGG 73
SD G +V G G GGG GG G GG G G G GGGG GG
Sbjct: 204 SDPDGRAKAIEVTGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGG 356
>BP043633
Length = 542
Score = 50.1 bits (118), Expect = 1e-07
Identities = 33/88 (37%), Positives = 37/88 (41%), Gaps = 19/88 (21%)
Frame = -1
Query: 14 GGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNG--CGSGGG--- 68
GG+ G G GG GGGG G+C G G GGG GGG G CG G G
Sbjct: 518 GGN*G*GG*GGRGGGGGG----------GNCLGW*E*GFDGGGGGGGGGPHCGGGEGVWD 369
Query: 69 --------------GGCGGLMWWRRRWW 82
GGCGG +W + WW
Sbjct: 368 GWWY*NWGEYHGA*GGCGGGIWGKWWWW 285
Score = 35.8 bits (81), Expect = 0.002
Identities = 30/77 (38%), Positives = 32/77 (40%), Gaps = 14/77 (18%)
Frame = -1
Query: 13 DGGSSGDDGCGGDSDGGGGVVIE--------KVVMVEGDCSGGDSG------GGGGGGDG 58
DGG G G GG GGG V + + G C GG G G GGGG
Sbjct: 431 DGGGGG--GGGGPHCGGGEGVWDGWWY*NWGEYHGA*GGCGGGIWGKWWWWLGSGGGG-- 264
Query: 59 GGNGCGSGGGGGCGGLM 75
GGGGGCGG M
Sbjct: 263 -------GGGGGCGGRM 234
Score = 27.3 bits (59), Expect = 0.69
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Frame = -2
Query: 7 DDGGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSG 66
D+ G D ++ G E V+V G G GGG + GG+ G
Sbjct: 505 DEAGEEDEEEEEEEETAWGGKNKGSTEEEAAVVVAPTAVEGKESGMGGGTEIGGSTTGLE 326
Query: 67 GG-----GGCGGLMW 76
G GG GG W
Sbjct: 325 GDVAVVFGGNGGGGW 281
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 47.8 bits (112), Expect = 5e-07
Identities = 36/83 (43%), Positives = 38/83 (45%), Gaps = 21/83 (25%)
Frame = -1
Query: 9 GGFADGGSSGDD----GCGGDSDGGGGVVIEKVVMVEGDCSGGDS--GGGGGGGDGGGN- 61
GG DG G D G GGD DGGGG + E D GGD GGGG GDGGG
Sbjct: 272 GGGGDGDGGGGDL***GGGGDGDGGGGDL***GGGGECDGGGGDW**YGGGGEGDGGGGD 93
Query: 62 --------------GCGSGGGGG 70
G G+GGGGG
Sbjct: 92 L**YGGGGGDL**YGFGTGGGGG 24
Score = 42.7 bits (99), Expect = 2e-05
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = -1
Query: 10 GFADGGSSGDD----GCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNG--- 62
G +G G D G GG+ GGGG + V +G+ GGD+ GGGGDG G G
Sbjct: 557 GAGEGEGGGGDV*WYGGGGNFTGGGGDL*MYVGAGDGEGGGGDA*WYGGGGDGEGGGGLT 378
Query: 63 -CGSGGGGGCGG 73
GGG GG
Sbjct: 377 *W*GGGGDDVGG 342
Score = 42.4 bits (98), Expect = 2e-05
Identities = 34/79 (43%), Positives = 37/79 (46%), Gaps = 22/79 (27%)
Frame = -1
Query: 21 GCGGDSDGGGGVVIEKVVMVEGDCSGGD----SGGG---GGGGD-----GGGNGCGSGG- 67
G GGD GGGG + V EG+ GGD GGG GGGGD G G+G G GG
Sbjct: 608 GGGGDFVGGGGDL*IYVGAGEGEGGGGDV*WYGGGGNFTGGGGDL*MYVGAGDGEGGGGD 429
Query: 68 ---------GGGCGGLMWW 77
G G GGL W
Sbjct: 428 A*WYGGGGDGEGGGGLT*W 372
Score = 40.8 bits (94), Expect = 6e-05
Identities = 33/80 (41%), Positives = 34/80 (42%), Gaps = 19/80 (23%)
Frame = -1
Query: 10 GFADGGSS-------GDDGCGGDSD----GGGGVVIEKVVMVEGDCSGGDSG--GGGGGG 56
G DGG G DG GG D GGGG +GD GGD GGGG
Sbjct: 311 GMGDGGGGLL**YGGGGDGDGGGGDL***GGGG---------DGDGGGGDL***GGGGEC 159
Query: 57 DGGG------NGCGSGGGGG 70
DGGG G G G GGG
Sbjct: 158 DGGGGDW**YGGGGEGDGGG 99
Score = 38.1 bits (87), Expect(2) = 2e-05
Identities = 34/89 (38%), Positives = 36/89 (40%), Gaps = 28/89 (31%)
Frame = -1
Query: 10 GFADGGSSGDD----GCGGDSDGGGGVVI-----EKVVMVEGDC------SGGDSGGG-- 52
G DG G D G GGD +GGGG+ V GD GD GGG
Sbjct: 461 GAGDGEGGGGDA*WYGGGGDGEGGGGLT*W*GGGGDDVGGGGDL***GG*GMGDGGGGLL 282
Query: 53 -----GGGGDGGG------NGCGSGGGGG 70
GG GDGGG G G G GGG
Sbjct: 281 **YGGGGDGDGGGGDL***GGGGDGDGGG 195
Score = 35.0 bits (79), Expect = 0.003
Identities = 27/69 (39%), Positives = 28/69 (40%), Gaps = 20/69 (28%)
Frame = -1
Query: 9 GGFADGGSSGDD----GCGGDSDGGGGVVIEKVVMVEGDCSGGD---------------- 48
GG DG G D G GG+ DGGGG EGD GGD
Sbjct: 224 GGGGDGDGGGGDL***GGGGECDGGGGDW**YGGGGEGDGGGGDL**YGGGGGDL**YGF 45
Query: 49 SGGGGGGGD 57
GGGGGGD
Sbjct: 44 GTGGGGGGD 18
Score = 24.3 bits (51), Expect = 5.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 71 CGGLMWWRRRWWRVVV 86
CG W RRRW +VV
Sbjct: 465 CGSWRWGRRRW*CIVV 418
Score = 23.5 bits (49), Expect(2) = 2e-05
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 2/14 (14%)
Frame = -3
Query: 76 WWRRRWW--RVVVV 87
WWR WW R+VVV
Sbjct: 171 WWRM*WWWGRLVVV 130
>BP033767
Length = 541
Score = 46.6 bits (109), Expect = 1e-06
Identities = 36/98 (36%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Frame = -3
Query: 3 AVVVDDGGFADGGSSGDDGCGGDSD------GGGGVVIEKVVMVEGDCSGGDSGGGGGGG 56
A VD+GG D G DG GD++ G GG+ ++ GGD GG GG G
Sbjct: 488 ASAVDEGGDRDDGDGAGDGGNGDAEELVGGFGFGGLREDE---------GGDVGGEGGEG 336
Query: 57 DG----------GGNGCGSG-GGGGCGGLMWWRRRWWR 83
G G CG GGGGCGG W WR
Sbjct: 335 GGRRRWWWRWVCGEERCGGILGGGGCGGGGKWVFWVWR 222
Score = 36.2 bits (82), Expect = 0.001
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Frame = -3
Query: 23 GGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDG------GGNGCG------SGGGGG 70
G +S GGVV V+ D G G GG+G GG G G G GG
Sbjct: 530 GSESLLVGGVVFAAASAVDEGGDRDDGDGAGDGGNGDAEELVGGFGFGGLREDEGGDVGG 351
Query: 71 CGGLMWWRRRWW 82
GG RRRWW
Sbjct: 350 EGGEGGGRRRWW 315
Score = 32.7 bits (73), Expect = 0.016
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Frame = -1
Query: 18 GDDGCGGDSD-GGGGVVIEKVVMV-------------EGDCSGGDSGGGGGGGDGGGNGC 63
G+ G GGD G GV VV+V EGD GD GGG GG +GG C
Sbjct: 331 GEGGGGGDGYVGKKGVEAFWVVVVVGVEENGYFGFGGEGD---GDGGGGFGG*EGGREPC 161
Query: 64 GSGGGGGCGGLMWWRRRWWRVVVV 87
G WWR++++
Sbjct: 160 VKG--------------WWRILLL 131
>AV427333
Length = 387
Score = 46.6 bits (109), Expect = 1e-06
Identities = 31/71 (43%), Positives = 33/71 (45%), Gaps = 13/71 (18%)
Frame = -3
Query: 20 DGCGGDSDGGGGVVIEKVVMVEGD-----CSGGDSGG---GGGGGDGGGNGCGSGGG--- 68
+G GG GGG V+ GD C GG G GGGG DGGG GC GGG
Sbjct: 367 EGEGGSGGGGGRTCGGGVIG*CGDGGGRTCGGGGVNG*DDGGGGDDGGGEGCPRGGGANE 188
Query: 69 --GGCGGLMWW 77
GG G L W
Sbjct: 187 *EGGGGDLK*W 155
Score = 36.6 bits (83), Expect = 0.001
Identities = 20/34 (58%), Positives = 21/34 (60%), Gaps = 2/34 (5%)
Frame = -3
Query: 42 GDCSGGDSGGGGGGGDGGG--NGCGSGGGGGCGG 73
G+ GG SGGGGG GGG CG GGG CGG
Sbjct: 370 GEGEGG-SGGGGGRTCGGGVIG*CGDGGGRTCGG 272
Score = 35.8 bits (81), Expect = 0.002
Identities = 27/68 (39%), Positives = 29/68 (41%), Gaps = 8/68 (11%)
Frame = -3
Query: 13 DGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGD------SGGGGGGGDGGGNGC--G 64
D G GDDG G GGG E + GGD GGG G +GG G
Sbjct: 253 DDGGGGDDGGGEGCPRGGGA-------NE*EGGGGDLK*WEGVGGGLKGWEGGVGGL*GW 95
Query: 65 SGGGGGCG 72
GGGG CG
Sbjct: 94 EGGGGKCG 71
>TC16065 weakly similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich
glycoprotein DZ-HRGP precursor, partial (20%)
Length = 608
Score = 45.8 bits (107), Expect = 2e-06
Identities = 31/71 (43%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Frame = -1
Query: 9 GGFADG-GSSGDDGCGGDSDGGGGVVIEKV---VMVEGDCSGGDSGGGGGGG-DGGGNGC 63
GG G G G G GG GG GV ++ +G GG S GG GG GGG G
Sbjct: 317 GGRGGGYGGGGGPGYGGGGRGGHGVPQQQYGGPPEYQGRGRGGPSQQGGRGGYSGGGGGY 138
Query: 64 GSGGGGGCGGL 74
G GGG G GG+
Sbjct: 137 GGGGGRGGGGM 105
Score = 37.4 bits (85), Expect = 7e-04
Identities = 25/64 (39%), Positives = 25/64 (39%)
Frame = -1
Query: 10 GFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSGGGG 69
G GG S G GG S GGGG GGGGG GGG G G G
Sbjct: 206 GRGRGGPSQQGGRGGYSGGGGGY------------------GGGGGRGGGGMGSGRGVSP 81
Query: 70 GCGG 73
GG
Sbjct: 80 SHGG 69
Score = 36.6 bits (83), Expect(2) = 4e-05
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = -1
Query: 46 GGDSGGGGGGGDGGGNGCGSGGGGGCG 72
GG GG GGG GGG G G GGGG G
Sbjct: 332 GGPPQGGRGGGYGGGGGPGYGGGGRGG 252
Score = 33.5 bits (75), Expect = 0.010
Identities = 17/28 (60%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 46 GGDSGGGGGG-GDGGGNGCGSGGGGGCG 72
G GG GGG G GGG G G GG GG G
Sbjct: 329 GPPQGGRGGGYGGGGGPGYGGGGRGGHG 246
Score = 31.6 bits (70), Expect = 0.036
Identities = 19/48 (39%), Positives = 19/48 (39%)
Frame = -1
Query: 15 GSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNG 62
G G G GG GG G GG GGGG G GGG G
Sbjct: 356 GPQGGRGYGGPPQGGRG--------------GGYGGGGGPGYGGGGRG 255
Score = 24.3 bits (51), Expect(2) = 4e-05
Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 2/10 (20%)
Frame = -3
Query: 76 WWRRR--WWR 83
WWRRR WWR
Sbjct: 156 WWRRRIWWWR 127
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 45.8 bits (107), Expect = 2e-06
Identities = 28/65 (43%), Positives = 28/65 (43%)
Frame = +2
Query: 9 GGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSGGG 68
GG GG G G GGGG SGG GG GG G GG G GGG
Sbjct: 602 GGGGGGGGYGGGRREGGYGGGGG----------SRYSGGGGGGYGGSGGGGYGGRREGGG 751
Query: 69 GGCGG 73
GG GG
Sbjct: 752 GGYGG 766
Score = 40.0 bits (92), Expect = 1e-04
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 9 GGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGG---GDGGGNGCGS 65
GG +GG G G GGGG GG GGG GG G GGG G
Sbjct: 632 GGRREGGYGGGGGSRYSGGGGGGY-------------GGSGGGGYGGRREGGGGGYGGSR 772
Query: 66 GGGGG 70
GGGG
Sbjct: 773 EGGGG 787
Score = 38.1 bits (87), Expect(2) = 2e-05
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Frame = +2
Query: 23 GGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGG----------GDGGGNGCGSGGGGGCG 72
G D DG V + E G GGGGGG G GGG+ GGGGG G
Sbjct: 545 GQDIDG------RNVTVNEAQARGRGGGGGGGGYGGGRREGGYGGGGGSRYSGGGGGGYG 706
Query: 73 G 73
G
Sbjct: 707 G 709
Score = 37.7 bits (86), Expect = 5e-04
Identities = 30/94 (31%), Positives = 35/94 (36%), Gaps = 15/94 (15%)
Frame = +2
Query: 8 DGGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGG--GGGGGDGGGNGCGS 65
+GG+ GG S G GG GG G GG G GGGGG GG G
Sbjct: 644 EGGYGGGGGSRYSGGGGGGYGGSG-------------GGGYGGRREGGGGGYGGSREGGG 784
Query: 66 GGGGGCGG-------------LMWWRRRWWRVVV 86
G GG +M+W W V+V
Sbjct: 785 GSRYSSGGSWRD*SFMIFLVSIMYWF*VWVSVMV 886
Score = 36.6 bits (83), Expect = 0.001
Identities = 20/51 (39%), Positives = 24/51 (46%)
Frame = +2
Query: 20 DGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSGGGGG 70
+G G G V + + + G GGGGGGG GGG G GGGG
Sbjct: 533 EGMNGQDIDGRNVTVNEAQ------ARGRGGGGGGGGYGGGRREGGYGGGG 667
Score = 26.9 bits (58), Expect(2) = 0.054
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +3
Query: 85 VVVTSTVVATAVVTVVVVVVVEAVV 109
VVV + VV V TVVVVV V AVV
Sbjct: 615 VVVDTAVVVVKVDTVVVVVAVIAVV 689
Score = 25.8 bits (55), Expect = 2.0
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +3
Query: 84 VVVVTSTVVATAVVTVVVVVVVEAVVV 110
VVV TVV VV V+ VV VEA+VV
Sbjct: 636 VVVKVDTVVV--VVAVIAVVAVEAMVV 710
Score = 25.4 bits (54), Expect = 2.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 84 VVVVTSTVVATAVVTVVVVVVVEAVVVE 111
VVV T+ VV VVVV V+ V VE
Sbjct: 615 VVVDTAVVVVKVDTVVVVVAVIAVVAVE 698
Score = 23.9 bits (50), Expect(2) = 2e-05
Identities = 17/29 (58%), Positives = 19/29 (64%), Gaps = 4/29 (13%)
Frame = +3
Query: 84 VVVVTSTVVA----TAVVTVVVVVVVEAV 108
VV V + VVA TAVV VVVVV+ AV
Sbjct: 684 VVAVEAMVVAEEEDTAVVVKVVVVVMVAV 770
Score = 22.7 bits (47), Expect(2) = 0.054
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 72 GGLMWWRRRWW 82
G W RRRWW
Sbjct: 589 GSRPWRRRRWW 621
>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
precursor , partial (81%)
Length = 1355
Score = 44.3 bits (103), Expect = 5e-06
Identities = 31/80 (38%), Positives = 38/80 (46%), Gaps = 4/80 (5%)
Frame = -3
Query: 2 VAVVVDDGGFADGGSSGDDGCGGDSDGG--GGVVIEKVVMVEGDCSGGDSGGGGGGGDGG 59
+A + DD G G+ +D G D G GG +E VV+ EGD + G GGG G
Sbjct: 516 LAELGDDEGGGGAGAEAEDHAGLDVVDGLVGGESLE-VVLGEGDGTDGFGSGGGA*FKGS 340
Query: 60 GNGCGSGGGG--GCGGLMWW 77
G GGG CGG WW
Sbjct: 339 GGA*DKVGGGIVVCGGERWW 280
>AU251550
Length = 329
Score = 44.3 bits (103), Expect = 5e-06
Identities = 36/101 (35%), Positives = 38/101 (36%), Gaps = 32/101 (31%)
Frame = -3
Query: 9 GGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGD----SGGGGG-------GGD 57
GG GG G G GG GGG + G C GG +GGGGG GG
Sbjct: 324 GGPGPGGCGGCGGPGGPGGGGG**NMAGGGGDGGPCGGGGW*CPNGGGGGAGA*GSRGGP 145
Query: 58 GGGN-----GCGSGGGGG----------------CGGLMWW 77
GGG GCG GGGG CGG W
Sbjct: 144 GGGGL**PGGCGGPGGGGLW*PGGGGPGGPGGPGCGGQCLW 22
Score = 33.1 bits (74), Expect = 0.012
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -3
Query: 52 GGGGGDGGGNGCGSGGGGGCGG 73
GGG G GG GCG GG G GG
Sbjct: 327 GGGPGPGGCGGCGGPGGPGGGG 262
Score = 28.1 bits (61), Expect = 0.40
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = -3
Query: 50 GGGGGGGDGGGNGCGSGGGGGCGG 73
GGG G G GG G G GG GG GG
Sbjct: 327 GGGPGPGGCGGCG-GPGGPGGGGG 259
>TC19908 similar to GB|CAA60022.1|791150|VURNEXT26 extensin-like protein
{Vigna unguiculata;} , partial (49%)
Length = 472
Score = 43.9 bits (102), Expect = 7e-06
Identities = 29/66 (43%), Positives = 37/66 (55%), Gaps = 2/66 (3%)
Frame = -2
Query: 7 DDGGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGD--SGGGGGGGDGGGNGCG 64
+DGG GG G GG+ +GGGG + +G+ GGD + GGGG GDGGG
Sbjct: 192 EDGG---GGDLYT*GGGGECEGGGGDL*I*GGGGDGEGGGGDLYTYGGGGEGDGGGGDL* 22
Query: 65 SGGGGG 70
+ GGGG
Sbjct: 21 T*GGGG 4
Score = 39.7 bits (91), Expect = 1e-04
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 23 GGDSDGGGGVVIEKVVMVEGDCSGGDSG----GGGGGGDGGGNGCGSGGGGGCG 72
G D DGGGG + G+C GG GGGG G+GGG + GGGG G
Sbjct: 201 GCDEDGGGGDLY--T*GGGGECEGGGGDL*I*GGGGDGEGGGGDLYTYGGGGEG 46
Score = 35.8 bits (81), Expect = 0.002
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -2
Query: 9 GGFADGGSSGDD----GCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGD 57
GG +GG G D G GGD +GGGG + EGD GGD GGGG+
Sbjct: 153 GGECEGG--GGDL*I*GGGGDGEGGGGDLYTYGGGGEGDGGGGDL*T*GGGGE 1
>BP034485
Length = 485
Score = 43.9 bits (102), Expect = 7e-06
Identities = 27/66 (40%), Positives = 32/66 (47%), Gaps = 3/66 (4%)
Frame = +3
Query: 13 DGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDC---SGGDSGGGGGGGDGGGNGCGSGGGG 69
+ G + G G GGGG ++K+ D S G SGG GGGG G GN G G
Sbjct: 201 NNGGGNNKGKEGKKGGGGGGKLDKIDFDFQDFDIPSHGKSGGKGGGGGGKGNKNGHDHGH 380
Query: 70 GCGGLM 75
G GG M
Sbjct: 381 GIGGNM 398
Score = 35.0 bits (79), Expect = 0.003
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 23/86 (26%)
Frame = +3
Query: 8 DGGFADGGSSGDDGCGGDSDG----------GGGVVIEKVVMVEGDCSGGDSGGG----- 52
DGG G GGDS GGG +++ + + + GG GGG
Sbjct: 3 DGGNKSKEGKQKGGGGGDSSSDKKKKTKDKNGGGFLVKFLGLGKKSKKGGGGGGGETANK 182
Query: 53 --------GGGGDGGGNGCGSGGGGG 70
GGG + G G GGGGG
Sbjct: 183NKNKNKNNGGGNNKGKEGKKGGGGGG 260
Score = 32.3 bits (72), Expect = 0.021
Identities = 24/71 (33%), Positives = 28/71 (38%), Gaps = 11/71 (15%)
Frame = +3
Query: 14 GGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGG---------GGGDGGGNGCG 64
GG S D D GG + K + + G GGGG +GGGN G
Sbjct: 48 GGDSSSDKKKKTKDKNGGGFLVKFLGLGKKSKKGGGGGGGETANKNKNKNKNNGGGNNKG 227
Query: 65 SGG--GGGCGG 73
G GGG GG
Sbjct: 228 KEGKKGGGGGG 260
Score = 24.3 bits (51), Expect = 5.8
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 21 GCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNG 62
G G GGGG +G+ +G D G G GG G G
Sbjct: 312 GKSGGKGGGGG--------GKGNKNGHDHGHGIGGNMNGNGG 413
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA binding
protein 7 {Arabidopsis thaliana;} , partial (19%)
Length = 483
Score = 43.9 bits (102), Expect = 7e-06
Identities = 34/90 (37%), Positives = 40/90 (43%), Gaps = 26/90 (28%)
Frame = -1
Query: 3 AVVVDDGGFADGGSSGDD-----------GCGGDS----DGGGGVVIEKV------VMVE 41
AVV DD G G + D G G D DGGGG+V++ V V +
Sbjct: 396 AVVPDDVGAVGGAAEDVDFGEGTAARGGVGAGVDDF*SVDGGGGLVVDFVDGAAVAVAED 217
Query: 42 GDC-----SGGDSGGGGGGGDGGGNGCGSG 66
G+ G SGGG GGG GG GCG G
Sbjct: 216 GELFNVAGDDGISGGGRGGGGGGFEGCGGG 127
Score = 26.9 bits (58), Expect = 0.90
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 41 EGDCSGGD---SGGGGGGGDGGGNGCGSGGGGGCGG 73
EG+ SGG + GGGG DGGG S G GG
Sbjct: 124 EGE*SGGGGRRAPGGGGWVDGGGGRRPSAVVGVAGG 17
Score = 23.5 bits (49), Expect = 9.9
Identities = 20/53 (37%), Positives = 21/53 (38%)
Frame = -1
Query: 2 VAVVVDDGGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGG 54
VAV D F G G G GG GGGG EG C GG+ G
Sbjct: 234 VAVAEDGELFNVAGDDGISG-GGRGGGGGG--------FEG-CGGGERESEAG 106
>TC19911 weakly similar to PIR|A44805|A44805 eggshell protein precursor -
fluke (Schistosoma haematobium) {Schistosoma
haematobium;} , partial (24%)
Length = 350
Score = 43.9 bits (102), Expect = 7e-06
Identities = 31/67 (46%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 9 GGFADGGSSGDDGCGGDSDGG---GGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGS 65
GG+ D SG GG DGG GG GD GG SGGGGGG GG GS
Sbjct: 133 GGYDDDNRSGGRTGGGYGDGGHSAGGY---------GD-HGGRSGGGGGGYGDGGLSSGS 282
Query: 66 GGGGGCG 72
GG G G
Sbjct: 283 GGYGDGG 303
Score = 42.7 bits (99), Expect = 2e-05
Identities = 30/79 (37%), Positives = 38/79 (47%), Gaps = 14/79 (17%)
Frame = +1
Query: 10 GFADGGSSGDDGCGGDSDGGG------GVVIEKVVMVEGDCSGGDSGGG--------GGG 55
G + GGS G+D D++ GG G + + + SGG +GGG GG
Sbjct: 34 GHSGGGSHGNDHRHSDNEHGGRRSETTGHGLSGGGYDDDNRSGGRTGGGYGDGGHSAGGY 213
Query: 56 GDGGGNGCGSGGGGGCGGL 74
GD GG G GGG G GGL
Sbjct: 214 GDHGGRSGGGGGGYGDGGL 270
Score = 37.7 bits (86), Expect = 5e-04
Identities = 28/63 (44%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Frame = +1
Query: 9 GGFADGGSS--GDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGG--GDGGGNGCG 64
GG+ DGG S G GG S GGGG +G S G G G GG G G G+G
Sbjct: 175 GGYGDGGHSAGGYGDHGGRSGGGGGGY------GDGGLSSGSGGYGDGGRSGVGYGDGXL 336
Query: 65 SGG 67
SGG
Sbjct: 337 SGG 345
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 43.5 bits (101), Expect = 9e-06
Identities = 30/76 (39%), Positives = 39/76 (50%), Gaps = 12/76 (15%)
Frame = -2
Query: 6 VDDGGFADGGSS-GDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSG---GGG-------G 54
V+ GG GG++ G G G GGGG ++ + + G + G+ G GGG G
Sbjct: 830 VEIGGLPGGGNNGGKGGKNGGGGGGGGGGVKPGITIGGKGNKGEGGCFDGGGWNGLGING 651
Query: 55 GGDGGG-NGCGSGGGG 69
GG GGG NG G GGG
Sbjct: 650 GGLGGG*NGLGISGGG 603
Score = 42.0 bits (97), Expect = 3e-05
Identities = 26/66 (39%), Positives = 34/66 (51%)
Frame = -2
Query: 9 GGFADGGSSGDDGCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGCGSGGG 68
GG +GG G +G GG GGGG ++ + + G + G+ G GGG G G G G
Sbjct: 809 GGGNNGGKGGKNGGGG---GGGGGGVKPGITIGGKGNKGEGGCFDGGGWNGLGINGGGLG 639
Query: 69 GGCGGL 74
GG GL
Sbjct: 638 GG*NGL 621
Score = 39.7 bits (91), Expect = 1e-04
Identities = 17/25 (68%), Positives = 17/25 (68%)
Frame = -2
Query: 46 GGDSGGGGGGGDGGGNGCGSGGGGG 70
GG GGG GG GG NG G GGGGG
Sbjct: 821 GGLPGGGNNGGKGGKNGGGGGGGGG 747
Score = 34.7 bits (78), Expect = 0.004
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -2
Query: 50 GGGGGGGDGGGNGCGSGGGGGCGG 73
GG GGG+ GG G +GGGGG GG
Sbjct: 821 GGLPGGGNNGGKGGKNGGGGGGGG 750
Score = 33.5 bits (75), Expect = 0.010
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Frame = -2
Query: 27 DGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGC---------GSGGGGGC 71
D G +E + G +GG G GGGG GGG G G+ G GGC
Sbjct: 851 DQGEEFFVEIGGLPGGGNNGGKGGKNGGGGGGGGGGVKPGITIGGKGNKGEGGC 690
Score = 33.1 bits (74), Expect = 0.012
Identities = 29/79 (36%), Positives = 38/79 (47%), Gaps = 15/79 (18%)
Frame = -2
Query: 10 GFADGGSSGDDGCG----------GDSDGGGGVVIEKVVMVEGDCSG-GDSGGG--GGGG 56
G + GG G +G G G GGG+ + + + G +G G +GGG G G
Sbjct: 620 GISGGGLGG*NGLGKSGGGLGGWNGSGKSGGGLG*KGLGIRGGG*NGLGINGGG*KGLGT 441
Query: 57 DGGGNGCGSGGGG--GCGG 73
+GG NG G GGG G GG
Sbjct: 440 NGG*NGLGIRGGGKNGIGG 384
Score = 31.2 bits (69), Expect = 0.047
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -2
Query: 8 DGGFADGGSSGDDGCGGDSDG----GGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNGC 63
DGG +G G GG +G GGG+ + G GG +G G GG G G
Sbjct: 686 DGGGWNGLGINGGGLGGG*NGLGISGGGLGG*NGLGKSGGGLGGWNGSGKSGGGLG*KGL 507
Query: 64 GSGGGG 69
G GGG
Sbjct: 506 GIRGGG 489
Score = 24.3 bits (51), Expect = 5.8
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -1
Query: 76 WWRRRWW 82
WWRR WW
Sbjct: 771 WWRRWWW 751
Score = 24.3 bits (51), Expect = 5.8
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -1
Query: 76 WWRRRWW 82
WW RRWW
Sbjct: 774 WWWRRWW 754
>AW720113
Length = 512
Score = 42.4 bits (98), Expect = 2e-05
Identities = 19/27 (70%), Positives = 19/27 (70%)
Frame = -1
Query: 50 GGGGGGGDGGGNGCGSGGGGGCGGLMW 76
GGGGGGG G G G GSGGGGG G W
Sbjct: 173 GGGGGGGCGCGCGGGSGGGGGSSGEGW 93
Score = 40.0 bits (92), Expect = 1e-04
Identities = 20/37 (54%), Positives = 20/37 (54%)
Frame = -1
Query: 51 GGGGGGDGGGNGCGSGGGGGCGGLMWWRRRWWRVVVV 87
GGGGGG G G GCG G GGG G W VVV
Sbjct: 176 GGGGGGGGCGCGCGGGSGGGGGS----SGEGWNAVVV 78
Score = 32.0 bits (71), Expect = 0.028
Identities = 18/41 (43%), Positives = 18/41 (43%)
Frame = -1
Query: 22 CGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGNG 62
CGG GGGG G C G GG GGGG G G
Sbjct: 179 CGG---GGGG----------GGCGCGCGGGSGGGGGSSGEG 96
Score = 28.9 bits (63), Expect = 0.24
Identities = 16/20 (80%), Positives = 16/20 (80%)
Frame = -2
Query: 92 VATAVVTVVVVVVVEAVVVE 111
VA AVV VVVVVVV A VVE
Sbjct: 172 VAVAVVVVVVVVVVVAAVVE 113
Score = 28.9 bits (63), Expect = 0.24
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -1
Query: 9 GGFADGGSSGDDGCGGDSDGGGG 31
GG GG G GCGG S GGGG
Sbjct: 176 GGGGGGGGCGC-GCGGGSGGGGG 111
Score = 24.6 bits (52), Expect = 4.4
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = -2
Query: 89 STVVATAVVTVVVVVVVEAVV 109
+ V VV VVVVVVV AVV
Sbjct: 178 AAVAVAVVVVVVVVVVVAAVV 116
Score = 23.9 bits (50), Expect = 7.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 84 VVVVTSTVVATAVVTVVVVVVVEAVVVEG 112
+ V VV VV VVV VVE + +G
Sbjct: 181 IAAVAVAVVVVVVVVVVVAAVVEDLAEKG 95
>AV410336
Length = 358
Score = 42.4 bits (98), Expect = 2e-05
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Frame = -3
Query: 1 MVAVVVDDGGFADGGSSGDDGCGGD-----------------SDGGGGVVIE----KVVM 39
+V VV+DGG + GD+ GG DGGGGV ++ KVV+
Sbjct: 350 LVKRVVEDGGGEEAAGGGDECWGGAVGFFGSNEAAVEDAAGRDDGGGGVGVDVDVVKVVV 171
Query: 40 VEGDC--SGGDSGGGGGGGDGGGNGCGSGGGGGCGG 73
+ G+ G G + G G G GGGG CGG
Sbjct: 170 AGEEFLPEWGEGEVGVGEEEEGDFGFGVGGGGACGG 63
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 42.4 bits (98), Expect = 2e-05
Identities = 26/60 (43%), Positives = 30/60 (49%), Gaps = 8/60 (13%)
Frame = -3
Query: 10 GFADGGSSGDD--------GCGGDSDGGGGVVIEKVVMVEGDCSGGDSGGGGGGGDGGGN 61
G +GG G D GCGG +GG +V E + GG GGG GGGDGGGN
Sbjct: 355 GAEEGGCDGVDFGRGHGFVGCGGGVEGG--IVEEGSGDGRWEGRGGACGGGSGGGDGGGN 182
Score = 23.9 bits (50), Expect = 7.6
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Frame = -2
Query: 65 SGGG---GGCGGLMW------WRRRWWR 83
SGGG GG W W RRWWR
Sbjct: 269 SGGGLWRWKVGGERWSLRRRKWWRRWWR 186
Score = 23.9 bits (50), Expect = 7.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 46 GGDSGGGGGGGDGGGNGCGSGGGGGCGGLM 75
G + GG G G G+G GGG GG++
Sbjct: 355 GAEEGGCDGVDFGRGHGFVGCGGGVEGGIV 266
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 42.0 bits (97), Expect = 3e-05
Identities = 19/27 (70%), Positives = 19/27 (70%)
Frame = -3
Query: 47 GDSGGGGGGGDGGGNGCGSGGGGGCGG 73
G SGGGGGGG GG GSGGGG GG
Sbjct: 290 GRSGGGGGGGGGGRRSRGSGGGGTNGG 210
Score = 37.0 bits (84), Expect = 9e-04
Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Frame = -3
Query: 45 SGGDSGGGGGG----GDGGGNGCGSGGGGGCGG-------------LMWWRRRWWRVVVV 87
SGG GGGGGG G GGG G G G GG R+ WW VV V
Sbjct: 284 SGGGGGGGGGGRRSRGSGGGGTNGGRRGRGKGGKRVGRG*GSRE*CRQGGRKWWWEVVAV 105
Score = 35.4 bits (80), Expect = 0.003
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Frame = -1
Query: 10 GFADGGSSGDDGCGGDSDGG--------------GGVVIEKVVMVEGDCSGGDSGGGGGG 55
G +GG + GG+ +GG GGV E+V D G G G
Sbjct: 343 GVEEGGGGEAEVGGGEGEGGVAEEVAAAAEVGEVGGV--EEVGPTAADEGEGREGRGWDA 170
Query: 56 GDG--------GGNG-------CGSGGGGGCGGLMW 76
G+ GGNG G GGGGG GG++W
Sbjct: 169 GEEVENDVVREGGNGGGRLLRWFGDGGGGGGGGVVW 62
Score = 26.6 bits (57), Expect = 1.2
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 50 GGGGGGGDGGGNGCGSGGGGGCGGLMWWRRRWWR 83
G G GG G G GG G WRR WR
Sbjct: 425 GARGRGGSGRSRGRRRCSRGGRGRGSIWRRGGWR 324
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.145 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,395,163
Number of Sequences: 28460
Number of extensions: 62283
Number of successful extensions: 6044
Number of sequences better than 10.0: 1079
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3894
length of query: 117
length of database: 4,897,600
effective HSP length: 78
effective length of query: 39
effective length of database: 2,677,720
effective search space: 104431080
effective search space used: 104431080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0072a.11