TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0072a.1
         (224 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10260 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (6%)           29  0.75
BI420172                                                               28  1.3
TC9483 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial ...    28  1.3
BP052381                                                               28  1.7
TC12525                                                                28  1.7
BP062817                                                               27  2.2
TC8140 similar to UP|O23106 (O23106) AP2 domain containing prote...    27  2.8
TC18371 similar to UP|ZOG_PHALU (Q9ZSK5) Zeatin O-glucosyltransf...    27  2.8
TC10927                                                                27  3.7
AV769636                                                               27  3.7
BP033273                                                               27  3.7
BP064845                                                               26  4.9
TC10872                                                                26  4.9
AV410769                                                               26  6.3
TC9723 similar to AAQ65179 (AAQ65179) At3g10960, partial (25%)         25  8.3
TC16363 UP|Q84RQ3 (Q84RQ3) Sucrose transporter 4 protein, complete     25  8.3
AW719969                                                               25  8.3
TC14206 similar to PIR|T49142|T49142 CCR4-associated factor 1-li...    25  8.3
TC17922                                                                25  8.3

>TC10260 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (6%)
          Length = 730

 Score = 28.9 bits (63), Expect = 0.75
 Identities = 23/85 (27%), Positives = 34/85 (39%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   FSVTQFDSSSGGGGFTSTQLNDSSPAPQKGRESQG-LVPVTVKQINEASQSGDEKSSFVI 60
           FS+TQ    SG  GFT T L      P       G L P+   Q+ E   S +E+     
Sbjct: 50  FSITQSAEQSGF*GFTVTMLGSLPILPLPAPPLDGNLGPLPESQVIEERPSDEEQRPATP 229

Query: 61  NGVELTNVTLVGMVFEKAERNTDVN 85
                T+   +G++    +  T V+
Sbjct: 230 AATVATHTRTIGIIHPPPDIRTIVD 304


>BI420172 
          Length = 545

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 159 HLRSKLKMEGTISTDPPASD-SSLKTPVRNTSNGSQAPSSTP 199
           H   K ++EGT   DPP+S+ +S   P  +T+ G+  PS  P
Sbjct: 1   HKIHKRELEGTQMQDPPSSNPNSQLPPPPSTTAGAGVPSPFP 126


>TC9483 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial (51%)
          Length = 549

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 14/59 (23%)
 Frame = +3

Query: 156 IHHHLRSKLKMEGTISTDPPAS--------------DSSLKTPVRNTSNGSQAPSSTPA 200
           +H H R + K E   S  PPA               DSS  TP   T      P S PA
Sbjct: 84  LHKHKRHRFKTESQSSPAPPAESVEKSRFTSLHSVPDSSSTTPPTRTKPTQSPPRSMPA 260


>BP052381 
          Length = 555

 Score = 27.7 bits (60), Expect = 1.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 170 ISTDPPASDSSLKTPVRNTSNGSQAPSSTP 199
           I+T PP+   +  TP + T+N +Q  S+TP
Sbjct: 70  ITTVPPSQSITKNTPTKLTTNPNQPVSTTP 159


>TC12525 
          Length = 507

 Score = 27.7 bits (60), Expect = 1.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 169 TISTDPPASDSSLKTPVRNTSNG 191
           T ST PP S SSL   + N SNG
Sbjct: 168 TFSTSPPPSSSSLNFALVNASNG 100


>BP062817 
          Length = 536

 Score = 27.3 bits (59), Expect = 2.2
 Identities = 22/71 (30%), Positives = 34/71 (46%), Gaps = 2/71 (2%)
 Frame = -2

Query: 100 WINDAFDTQEVEEIMNGM-YVRVNGHLKSFQGVRQVAAFSVRPVVN-FDEIPFHFIDCIH 157
           W N +FD+ E+EE ++ +   R +G +     VR    F V      FD+I   F + +H
Sbjct: 400 WNNGSFDSHEIEEQVSSLEEARCSGXVH----VRXKTRFYVXLNCGWFDKIMLGFYEIMH 233

Query: 158 HHLRSKLKMEG 168
            + RS L   G
Sbjct: 232 SNXRSGLPALG 200


>TC8140 similar to UP|O23106 (O23106) AP2 domain containing protein RAP2.4
           (Fragment), partial (16%)
          Length = 616

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 157 HHHLRSKLKMEGTISTDPPASDSSLKTP 184
           HHH + +L      S++PPA     KTP
Sbjct: 91  HHHHQQQLNFPPCESSEPPAEQPPWKTP 8


>TC18371 similar to UP|ZOG_PHALU (Q9ZSK5) Zeatin O-glucosyltransferase
           (Trans-zeatin O-beta-D-glucosyltransferase) , partial
           (14%)
          Length = 433

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 3   SVTQFDSSSGGGGFTSTQLNDSSPAP 28
           SV+   S SGGG F+ST+ +  +P P
Sbjct: 111 SVSPKPSGSGGGSFSSTRPSQPAPPP 188


>TC10927 
          Length = 575

 Score = 26.6 bits (57), Expect = 3.7
 Identities = 18/49 (36%), Positives = 26/49 (52%), Gaps = 6/49 (12%)
 Frame = +1

Query: 156 IHHHLRSKLKMEGTIS------TDPPASDSSLKTPVRNTSNGSQAPSST 198
           +HHH  S  ++  TIS        P AS  S KTP   T++ S +P++T
Sbjct: 205 LHHHSPSPSRITKTISYSHPTAHSPQASTPSAKTP---TASPSGSPNNT 342


>AV769636 
          Length = 470

 Score = 26.6 bits (57), Expect = 3.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 81  NTDVNFVLDDGTGRIKCRRWINDAFDT 107
           NT  NF+  D  G +KC  W  + F T
Sbjct: 229 NTFFNFLSKDSIGHVKCPFWEGE*FST 309


>BP033273 
          Length = 526

 Score = 26.6 bits (57), Expect = 3.7
 Identities = 16/56 (28%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
 Frame = +3

Query: 146 DEIPFHFIDCIHHHLRSKLKMEGTISTDPPASDSSLK--TPVRNTSNGSQAPSSTP 199
           DE+P     C+   L SK++   ++  +PP    ++   TP ++  N S  P  TP
Sbjct: 189 DELPNC*FACVDSSLGSKMESSCSLCENPPLMFLTIPPLTPRKSKVNLSDPPKHTP 356


>BP064845 
          Length = 472

 Score = 26.2 bits (56), Expect = 4.9
 Identities = 11/17 (64%), Positives = 12/17 (69%)
 Frame = +2

Query: 184 PVRNTSNGSQAPSSTPA 200
           P  N SNGS  PSSTP+
Sbjct: 113 PSSNVSNGSTRPSSTPS 163


>TC10872 
          Length = 662

 Score = 26.2 bits (56), Expect = 4.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 142 VVNFDEIPFHFIDCIHHHLRSKLKM 166
           ++ F   PF+FI+CI  H  S  K+
Sbjct: 528 LIKFQSYPFNFINCIKLHFSSVRKV 602


>AV410769 
          Length = 209

 Score = 25.8 bits (55), Expect = 6.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 169 TISTDPPASDSSLKTPVR 186
           T+ T PPAS SS++ P+R
Sbjct: 103 TVPTPPPASKSSMRFPLR 156


>TC9723 similar to AAQ65179 (AAQ65179) At3g10960, partial (25%)
          Length = 689

 Score = 25.4 bits (54), Expect = 8.3
 Identities = 11/31 (35%), Positives = 18/31 (57%)
 Frame = +3

Query: 171 STDPPASDSSLKTPVRNTSNGSQAPSSTPAY 201
           S  PP+  SS   P R++   + +PS+ P+Y
Sbjct: 327 SATPPSPPSSAPAPPRSSLWPTSSPSTPPSY 419


>TC16363 UP|Q84RQ3 (Q84RQ3) Sucrose transporter 4 protein, complete
          Length = 2164

 Score = 25.4 bits (54), Expect = 8.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 132 RQVAAFSVRPVVNFDEIPFHFIDCIHHHLRSKLKMEGTISTDPPASDSSLKTPVR 186
           R+ A  +V+P      +P    +  HHH RSK +   + +  PP+     + P+R
Sbjct: 105 RKRARTTVKPDTRRAAMPGDPDNRHHHHPRSKNRPSTSSARPPPSRPPPARVPLR 269


>AW719969 
          Length = 263

 Score = 25.4 bits (54), Expect = 8.3
 Identities = 15/54 (27%), Positives = 26/54 (47%)
 Frame = +2

Query: 149 PFHFIDCIHHHLRSKLKMEGTISTDPPASDSSLKTPVRNTSNGSQAPSSTPAYA 202
           PF     +HHH  ++     +    PP+S +S  +   +TS  +   S+TP +A
Sbjct: 2   PFTTTTLLHHHHNNRHHSTTSHKPSPPSSTASKPSNPPSTSTHTNL-SATPPHA 160


>TC14206 similar to PIR|T49142|T49142 CCR4-associated factor 1-like protein
           - Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (87%)
          Length = 1151

 Score = 25.4 bits (54), Expect = 8.3
 Identities = 14/52 (26%), Positives = 22/52 (41%), Gaps = 2/52 (3%)
 Frame = -3

Query: 148 IPFHFIDCIHHHLRSKLKMEGTISTDPP--ASDSSLKTPVRNTSNGSQAPSS 197
           +P     C  HH     K   TIS  PP  ++ S+   P   + N ++  +S
Sbjct: 852 VPHRTASCTSHHKHFSRKTPSTISEIPPTHSAGSAASAPSPGSRNRTRCETS 697


>TC17922 
          Length = 470

 Score = 25.4 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = +1

Query: 174 PPASDSSLKTPVRNTSNGSQAPSSTPAYA 202
           PP S      P R+T+  SQA ++ P Y+
Sbjct: 142 PPTSSPPSSPPSRSTTPTSQATANAPPYS 228


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,429,418
Number of Sequences: 28460
Number of extensions: 41318
Number of successful extensions: 323
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of query: 224
length of database: 4,897,600
effective HSP length: 87
effective length of query: 137
effective length of database: 2,421,580
effective search space: 331756460
effective search space used: 331756460
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)