TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0071.7
         (393 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB828313                                                              140  4e-34
TC18997 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {Ar...   115  1e-26
TC16809 weakly similar to UP|Q8H1G8 (Q8H1G8) MRS2-7, partial (18%)     97  5e-21
TC13767 similar to GB|AAN73219.1|25360983|AY150294 MRS2-10 {Arab...    86  8e-18
TC9826 similar to GB|AAN73212.1|25360813|AY150287 MRS2-2 {Arabid...    80  8e-16
TC17641 homologue to GB|AAP31966.1|30387601|BT006622 At3g19640 {...    69  2e-12
TC18830 weakly similar to UP|O40637 (O40637) Protease, partial (5%)    28  2.0
BP065011                                                               28  2.6
TC9009 similar to PIR|T06773|T06773 ferredoxin-NADP reductase  -...    27  4.5
BP048580                                                               27  7.7
TC12362 weakly similar to UP|UBF1_HUMAN (P17480) Nucleolar trans...    27  7.7
BP036801                                                               27  7.7

>CB828313 
          Length = 541

 Score =  140 bits (353), Expect = 4e-34
 Identities = 84/179 (46%), Positives = 106/179 (58%)
 Frame = +2

Query: 18  VKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGREKA 77
           V+KK    R+W+L  A+G   +++  K+AIM R  + ARDLRILDPLLSYPST       
Sbjct: 44  VRKKATGVRAWLLLQANGDTEVVEAGKHAIMRRTGLPARDLRILDPLLSYPST------- 202

Query: 78  IVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRLPKVSSLHQQQGDGQEYVSSQHD 137
            V+NLEHIKAII A EVLL +  D +V P V+EL+ R+     L  +            +
Sbjct: 203 -VINLEHIKAIIIAHEVLLLNSRDPSVTPFVDELRARI-----LRHRHATTSNPKLEMDN 364

Query: 138 TEAAEEDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRK 196
            E       PFEF ALE  LEA CS L      LE  A+PALD+LTSKIS+ NL+RVR+
Sbjct: 365 PEDGGMKILPFEFVALEACLEAACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQ 541


>TC18997 similar to GB|AAP31966.1|30387601|BT006622 At3g19640 {Arabidopsis
           thaliana;}, partial (17%)
          Length = 406

 Score =  115 bits (289), Expect = 1e-26
 Identities = 57/98 (58%), Positives = 74/98 (75%)
 Frame = +2

Query: 18  VKKKTQSSRSWILFDADGQGSLLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGREKA 77
           V+KK    R+W+L  A+G   +++  K+AIM R  + ARDLRILDPLLSYPST+LGRE+A
Sbjct: 29  VRKKATGVRAWLLLQANGDTEVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERA 208

Query: 78  IVLNLEHIKAIITAEEVLLRDPTDENVVPVVEELQRRL 115
           IV+NLEHIKAII A EVLL +  D +V P V+EL+ R+
Sbjct: 209 IVINLEHIKAIIIAHEVLLLNSRDPSVTPFVDELRARI 322


>TC16809 weakly similar to UP|Q8H1G8 (Q8H1G8) MRS2-7, partial (18%)
          Length = 490

 Score = 97.1 bits (240), Expect = 5e-21
 Identities = 46/68 (67%), Positives = 55/68 (80%)
 Frame = +1

Query: 326 LELFLSSGTVCLSFYSLVAAIFGMNIPYSWNDNHGFMFKWVVIVSGVFSAIMFLLIIVYA 385
           LELFL SGTV LS  SLVAAIFGMNIPY+W + HG++FKWVVI +G+  A +FL I  YA
Sbjct: 88  LELFLRSGTVSLSICSLVAAIFGMNIPYTWREGHGYIFKWVVIFAGMVCASLFLSIAAYA 267

Query: 386 RKKGLVGS 393
           R++GLVGS
Sbjct: 268 RRQGLVGS 291


>TC13767 similar to GB|AAN73219.1|25360983|AY150294 MRS2-10 {Arabidopsis
           thaliana;}, partial (21%)
          Length = 652

 Score = 86.3 bits (212), Expect = 8e-18
 Identities = 44/94 (46%), Positives = 63/94 (66%)
 Frame = +2

Query: 298 LTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYSWND 357
           LT+L+EYIDDTED+INIQLDN RNQLIQ EL L++ T  ++ + +VA IFGMN      D
Sbjct: 2   LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPLFD 181

Query: 358 NHGFMFKWVVIVSGVFSAIMFLLIIVYARKKGLV 391
                F+WV+I++GV    +F   + + + + L+
Sbjct: 182 VPS-AFQWVLIITGVCGVFIFSAFVWFFKYRRLM 280


>TC9826 similar to GB|AAN73212.1|25360813|AY150287 MRS2-2 {Arabidopsis
           thaliana;}, partial (13%)
          Length = 1285

 Score = 79.7 bits (195), Expect = 8e-16
 Identities = 63/195 (32%), Positives = 77/195 (39%), Gaps = 101/195 (51%)
 Frame = +3

Query: 300 TLREYIDDTEDYI----NIQLDNHRNQLIQ------------------------------ 325
           T+   I++T  Y+    ++QLDNHRNQLIQ                              
Sbjct: 75  TIYSNINNTWCYVAYA*HVQLDNHRNQLIQV*AFGPSLMRFFMPNPIHTLSEALICLQNH 254

Query: 326 --------------------LELFLSSGTVCLSFYSLVAAIFGMNIPYSWNDNHGFMFKW 365
                               LELFLSSGTV LS  SLVAAIFGMNIPY+W + HG++FKW
Sbjct: 255 IL*CL*VLHLMFILVLPK**LELFLSSGTVSLSICSLVAAIFGMNIPYTWREGHGYIFKW 434

Query: 366 -----------------------------------------------VVIVSGVFSAIMF 378
                                                          VVI +G+  A +F
Sbjct: 435 VCMLRKKYSHFD*HVLPYTCVCV*EKESMSFFFLLNFVFSN*K**I*VVIFAGMVCASLF 614

Query: 379 LLIIVYARKKGLVGS 393
           L I  YAR+KGLVGS
Sbjct: 615 LSIAAYARRKGLVGS 659


>TC17641 homologue to GB|AAP31966.1|30387601|BT006622 At3g19640 {Arabidopsis
           thaliana;}, partial (11%)
          Length = 521

 Score = 68.6 bits (166), Expect = 2e-12
 Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
 Frame = +2

Query: 302 REYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVAAIFGMNIPYS-WNDNHG 360
           REY+DDTEDYINI LD+ +N L+Q+ + L++ T+ +S + +VA IFGMNI    +N +  
Sbjct: 2   REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIKIELFNPDIA 181

Query: 361 FMFKWVVIVSGVFSAIMFLLIIVYA 385
            M +++  V G  +  +FL ++  A
Sbjct: 182 GMREFLWTVGGSTAGTIFLYVVAIA 256


>TC18830 weakly similar to UP|O40637 (O40637) Protease, partial (5%)
          Length = 850

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 25/102 (24%), Positives = 46/102 (44%), Gaps = 1/102 (0%)
 Frame = +2

Query: 126 GDGQEYVSSQHDTEAAEEDESPFEFRALEVAL-EAICSFLAARTTELEMAAYPALDELTS 184
           G+G E + ++H TE  E           +  L E   + L+   TE +     ++D  +S
Sbjct: 38  GNGSEALINEHLTEGVEASYGNENIGEDDDLLPENSVTNLSWGATEEK-----SVDNQSS 202

Query: 185 KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMA 226
            +    ++ +R L +    L   VQK R+   +++  DDD+A
Sbjct: 203 NMEDPLIESIRSLLAVQEALEEEVQKFRETGIEVVSPDDDLA 328


>BP065011 
          Length = 527

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 7/56 (12%)
 Frame = +3

Query: 231 SRKAGSSSPVSGSGAANWFGGSPTIGSKIS-------RASRASLATVRFDENDVEE 279
           S+K  SSSP  G G     GG+ T+  K++       RAS  S   V+  E +V++
Sbjct: 135 SKKRYSSSPRGGGGGGLRDGGAATVKVKVTQLV*GIRRASSPSSVEVKKTEEEVKQ 302


>TC9009 similar to PIR|T06773|T06773 ferredoxin-NADP reductase  - garden
           pea                 (fragment) {Pisum sativum;} ,
           partial (33%)
          Length = 585

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 230 LSRKAGSSSPVSGSGAANWFGGSPTIGSKISRASRASL 267
           L +K+    PVS S  ++W   S  +  +I R+SRASL
Sbjct: 317 LCKKSSGDMPVSASATSDW-AQSYCLPIRIGRSSRASL 427


>BP048580 
          Length = 533

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 339 FYSLVAAIFGMNIPYSWNDNHGFMFKWVV 367
           + +L    +G+++PY    N+ F F W++
Sbjct: 157 YNALFLTFYGLSLPYICMANYSFWFMWMI 71


>TC12362 weakly similar to UP|UBF1_HUMAN (P17480) Nucleolar transcription
           factor 1 (Upstream binding factor 1) (UBF-1)
           (Autoantigen NOR-90), partial (3%)
          Length = 493

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = +3

Query: 216 EQLLDDDDDMADLYLSRKAGSSS 238
           E   DD+DDM + YL+ K+ SS+
Sbjct: 114 EDFEDDEDDMLEHYLAEKSDSST 182


>BP036801 
          Length = 540

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 94  VLLRDPTDENVVPVVEELQRRLPKVSSLH 122
           VLLR P      P    LQRRLP+   LH
Sbjct: 336 VLLRRPHPRRHPPPNRRLQRRLPQAPHLH 422


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,533,514
Number of Sequences: 28460
Number of extensions: 66347
Number of successful extensions: 387
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of query: 393
length of database: 4,897,600
effective HSP length: 92
effective length of query: 301
effective length of database: 2,279,280
effective search space: 686063280
effective search space used: 686063280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)