TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0069.10
         (641 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19023 similar to UP|Q9M648 (Q9M648) FKF1 (ADAGIO 3), partial (...   276  6e-75
TC12771 similar to UP|Q945N7 (Q945N7) AT5g04420/T32M21_20, parti...    65  3e-11
TC15606 weakly similar to GB|AAL15406.1|16323302|AY058232 At2g02...    56  2e-08
AU089476                                                               40  0.002
AV423739                                                               33  0.14
BP075329                                                               30  0.91
AU089397                                                               30  1.2
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)           28  3.5
CB829198                                                               28  3.5
AV778810                                                               27  7.7

>TC19023 similar to UP|Q9M648 (Q9M648) FKF1 (ADAGIO 3), partial (19%)
          Length = 716

 Score =  276 bits (707), Expect = 6e-75
 Identities = 129/129 (100%), Positives = 129/129 (100%)
 Frame = +3

Query: 513 GEAYTIDLEDEKPQWRQLDCNEFSGLASQNPDVPPPRLDHVAVSMPCGRIIIFGGSIAGL 572
           GEAYTIDLEDEKPQWRQLDCNEFSGLASQNPDVPPPRLDHVAVSMPCGRIIIFGGSIAGL
Sbjct: 3   GEAYTIDLEDEKPQWRQLDCNEFSGLASQNPDVPPPRLDHVAVSMPCGRIIIFGGSIAGL 182

Query: 573 HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNEL 632
           HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNEL
Sbjct: 183 HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNEL 362

Query: 633 HELCLASDL 641
           HELCLASDL
Sbjct: 363 HELCLASDL 389



 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 34/128 (26%), Positives = 64/128 (49%), Gaps = 13/128 (10%)
 Frame = +3

Query: 353 DTFVLNLDSKNPEWRRVSVKSS----------PPGRWGHTLSCLNGSWLVVFGGCGRKGL 402
           + + ++L+ + P+WR++               PP R  H    +    +++FGG    GL
Sbjct: 6   EAYTIDLEDEKPQWRQLDCNEFSGLASQNPDVPPPRLDHVAVSMPCGRIIIFGG-SIAGL 182

Query: 403 LN--DVFVLDLDAQQPTWTEV-CGGAPPLPRSWHSSCTIEGSKLVVSGGCTDSGVLLSDT 459
            +   +F+LD   ++P+W  +   G PP     HS+C + G++++V GG T    +L++ 
Sbjct: 183 HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNEL 362

Query: 460 YLLDLAKD 467
           + L LA D
Sbjct: 363 HELCLASD 386



 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 31/108 (28%), Positives = 52/108 (47%), Gaps = 11/108 (10%)
 Frame = +3

Query: 405 DVFVLDLDAQQPTW-----TEVCGGAP-----PLPRSWHSSCTIEGSKLVVSGGCTDSGV 454
           + + +DL+ ++P W      E  G A      P PR  H + ++   ++++ GG      
Sbjct: 6   EAYTIDLEDEKPQWRQLDCNEFSGLASQNPDVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 185

Query: 455 LLSDTYLLDLAKDNPIWREIPTSWSPPS-RLGHSLSVYGRTKILMFGG 501
             S  +LLD +++ P WR +     PP    GHS  V G T++L+ GG
Sbjct: 186 SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 329



 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +3

Query: 337 RLVLFGGEGVDMQPMADTFVLNLDSKNPEWRRVSVKSSPPG-RWGHTLSCLNGSWLVVFG 395
           R+++FGG    +   +  F+L+   + P WR ++V   PP   WGH+   + G+ ++V G
Sbjct: 147 RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 326

Query: 396 G-CGRKGLLNDVFVLDL 411
           G  G + +LN++  L L
Sbjct: 327 GHTGEEWVLNELHELCL 377


>TC12771 similar to UP|Q945N7 (Q945N7) AT5g04420/T32M21_20, partial (35%)
          Length = 881

 Score = 65.1 bits (157), Expect = 3e-11
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
 Frame = +2

Query: 342 GGEGVDMQPMADTFVLNLDSKNPEWRRVSVKSSPPG-RWGHTLSCLNGSWLVVFGGCGRK 400
           GGE +  + + D  VL+L+S    W  +    +PP  R+ H  +     +L+VFGGC   
Sbjct: 5   GGEDMGRKLLNDVHVLDLESMT--WDMIKTTQTPPAPRYDHAAAMHGERYLLVFGGCSHS 178

Query: 401 GLLNDVFVLDLDAQQPTWTEVCGGAPPLPRSWHSSCTIEGSKLVVSGGCTDSGVLLSDTY 460
              ND+ +LDL   + +  +  G     PR+ H+  TI+ S  +V GG   SG    +T 
Sbjct: 179 VFFNDLHLLDLQTMEWSQPQTQGDLVS-PRAGHAGITIDESWFIVGGGDNKSG--CPETL 349

Query: 461 LLDLAKDNPIWR--EIPTSWSPPSRLGHSLS---VYGRTKILMFGG 501
           +LD++K   +W    +     P S  G S+    + G   +L FGG
Sbjct: 350 VLDMSK--LVWSVLAVVKQKDPLSSEGLSICSAWIDGEKYLLAFGG 481


>TC15606 weakly similar to GB|AAL15406.1|16323302|AY058232
           At2g02710/T20F6.15 {Arabidopsis thaliana;}, partial
           (25%)
          Length = 642

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = +1

Query: 72  TPTSFVVADALEPDFPIIYVNKVFETSTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPV 131
           T TSF + D      PI++ +  F   TG+  DE +GR     Q   P   RR       
Sbjct: 328 TDTSFTITDPSVSGHPIVFASLGFLKMTGFSRDEVVGRGGGMFQ--GPGTCRRS------ 483

Query: 132 VVAEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHD-DDGTVTHVIGIQI 184
            V  IR  + E  E Q   LN+RKDGTP    L + P+     G V H + +Q+
Sbjct: 484 -VMAIREAVREEKEAQVVXLNYRKDGTPFXMLLLVCPVFSASSGGVVHFVAVQV 642


>AU089476 
          Length = 548

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/21 (80%), Positives = 19/21 (89%)
 Frame = +3

Query: 619 LGGHTGEEWVLNELHELCLAS 639
           LGG TGEEW+L+ELHEL LAS
Sbjct: 9   LGGQTGEEWMLSELHELSLAS 71


>AV423739 
          Length = 465

 Score = 33.1 bits (74), Expect = 0.14
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +1

Query: 227 QDMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEV 285
           QD+  +L L D  L   IL RL P  +  +  VCR +R+   ++H+ +   +  WGK +
Sbjct: 85  QDL-SVLDLPDLAL-ECILERLPPSALCQMAGVCRSLRESCVSDHLWERHMKQKWGKVI 255


>BP075329 
          Length = 466

 Score = 30.4 bits (67), Expect = 0.91
 Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
 Frame = -1

Query: 390 WLVVFGGCGRKGLLNDVFVLDLDAQQPTWTEVCG-GAPPLPRSWHSSCTIEG 440
           +L++FGG       ND+ VLDL   +  W+     G  P  R+ H+  T+ G
Sbjct: 463 YLLIFGGGSHATCYNDLHVLDLQTME--WSRPTPLGEIPTARAGHAGVTVRG 314


>AU089397 
          Length = 306

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 327 CNFSACAAGNRLVLFGGEGVDMQPMADTFVLNLDSKNPEWRRVSVKSSPP 376
           C F +C+A + LVL         P +D   L + + +P      + SSPP
Sbjct: 25  CLFKSCSASSPLVLMAPHSTSFSPSSDPIPLTISTPSP------LSSSPP 156


>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
          Length = 735

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 4   ENKNKNKEDEDELHNHNSTGK-RLKCMRKMKKNEEQDQVVDDDDGVVVVAGEAEESE 59
           E + +++EDE+E   H + G+ R++  ++  + EE  +  ++++ VVV   +  E E
Sbjct: 339 EEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDE 509


>CB829198 
          Length = 562

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 4   ENKNKNKEDEDE-LHNHNSTGKRLKCMRKMKKNEEQDQVVDDD 45
           ++K + +E+EDE   N N+  KR K  +K KKN+E+    D++
Sbjct: 297 DSKEETEEEEDEDGDNENNKPKRAKAAKK-KKNKERSNKSDNE 422


>AV778810 
          Length = 497

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 20/60 (33%), Positives = 24/60 (39%), Gaps = 1/60 (1%)
 Frame = +3

Query: 333 AAGNRLVLFGGEGVDMQPMADTFVLNLDSKNPEWRRVSVKS-SPPGRWGHTLSCLNGSWL 391
           A GNR++L     +   P       N D  N  W +  V   SP  RW  T   L  SWL
Sbjct: 291 AGGNRMLLLHFRWI-CSPQRPGLPENDDEWN--WAKADVTGISPESRWSETFRYLRPSWL 461


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,255,193
Number of Sequences: 28460
Number of extensions: 209830
Number of successful extensions: 937
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of query: 641
length of database: 4,897,600
effective HSP length: 96
effective length of query: 545
effective length of database: 2,165,440
effective search space: 1180164800
effective search space used: 1180164800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)