BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067a.8
(611 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV767121 164 3e-41
TC13572 149 8e-37
BP041113 139 1e-33
AV780221 102 2e-22
AV412895 89 3e-18
BP056597 84 9e-17
AV414139 79 2e-15
AV428268 72 3e-13
AV418280 65 2e-11
AU089037 63 1e-10
TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane pro... 63 2e-10
CN825238 60 1e-09
AV427022 59 2e-09
BP060613 57 7e-09
BP028574 57 9e-09
AV411435 53 2e-07
TC20217 50 8e-07
AV426437 45 3e-05
AU089120 44 6e-05
CB826728 43 2e-04
>AV767121
Length = 525
Score = 164 bits (416), Expect = 3e-41
Identities = 85/175 (48%), Positives = 105/175 (59%), Gaps = 1/175 (0%)
Frame = +2
Query: 215 KAKAFIFRGEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAW 274
K K F G L P + FLS+FK+P+GV K C R+M NFLWGGS E +IA
Sbjct: 14 KQKTVSFGGRIFLIQSVLTALP-LFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENKIA* 190
Query: 275 VSWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIES 334
V W +CKPK+ GGLG+KD FN A+LGK WRYL + +SLW +VI+A+ D S
Sbjct: 191 VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQPDHYS--CGS 364
Query: 335 PWWRDV-QAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLY 388
WW D+ D G WF +GL K+VG GD T+FW EDW G G L R+ RLY
Sbjct: 365 SWWNDILSLCPEDADG--WFSSGLKKLVGEGDQTKFWSEDWLGSGLLSARFRRLY 523
>TC13572
Length = 534
Score = 149 bits (377), Expect(2) = 8e-37
Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = -3
Query: 317 WCQVIKAKYDQPGRIIESPWWRDVQAARVDMGGIN-WFEAGLAKVVGNGDSTQFWLEDWS 375
WC+V+ AKY G S WWRDVQ A GG N WFE G+ KV+ +G+ T+FWLE+W+
Sbjct: 478 WCRVVLAKYGDGGCTNISSWWRDVQTAG---GGENGWFEEGVHKVLRSGNHTRFWLENWT 308
Query: 376 GKGKLDGRYHRLYNLSRQKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVG 435
G G L +Y+RLYNLS+ K++ I + G W W W F WRR L+ RE W+Q + ++
Sbjct: 307 GVGILREKYYRLYNLSKLKWASIDECGGWSQGVWNWDFRWRRPLAGRELDWLQALSLDIV 128
Query: 436 EVVLVQNRSDVWRWPPNSEGFYTVNNAYLFMQGDEGEP 473
V L+ D W W P+ +G Y+VN+A++F+Q +P
Sbjct: 127 RVPLLAGVPDKWVWKPSEDGSYSVNSAFIFLQVPSEQP 14
Score = 21.6 bits (44), Expect(2) = 8e-37
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 298 NTAVLGKCCWRYLCDTNSL 316
N A+LGK WR NSL
Sbjct: 534 NKALLGKWLWRLKTVPNSL 478
>BP041113
Length = 503
Score = 139 bits (350), Expect = 1e-33
Identities = 70/170 (41%), Positives = 95/170 (55%), Gaps = 1/170 (0%)
Frame = +1
Query: 369 FWLEDWSGKGKLDGRYHRLYNLSRQKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQ 428
FW EDW G G L RY+RL+NLS++K I++ G W W WK SWRR L RE GW++
Sbjct: 1 FWTEDWIGMGTLRDRYYRLFNLSKEKRCCILECGGWNHGVWTWKLSWRRALVGRELGWLE 180
Query: 429 KMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVNNAYLFMQGDE-GEPDAALKRLWAAPVPS 487
M +++ V L + D W W P G YTVN+AY F+Q + D +W PS
Sbjct: 181 LMMKDLSGVCLSEGVEDKWLWLPG--GTYTVNSAYSFLQAPTLADTDPIFATIWRTVAPS 354
Query: 488 NVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLS 537
VKAFAW+ +L R+P L +R V+ + C C EVE+ HL+ +
Sbjct: 355 -VKAFAWRCLLGRLPTYDNLIKRQVVVDPAMTVCKFCQGEVESVTHLLFA 501
>AV780221
Length = 461
Score = 102 bits (253), Expect = 2e-22
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 5/152 (3%)
Frame = +3
Query: 230 KCALVSPAVLFLSYFKIPVG-----VEKECQRIMWNFLWGGSPEERRIAWVSWERICKPK 284
+ L++ + L +FK+P G V + GG ++IAWV W +C+PK
Sbjct: 15 RSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGG----KKIAWVKWSTVCRPK 182
Query: 285 DFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESPWWRDVQAAR 344
D GGLG+++ FN A+LGK WR L + + LW +V+ KY S WW D+ +
Sbjct: 183 DEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKYKNAIPQSASSWWNDLHSTC 362
Query: 345 VDMGGINWFEAGLAKVVGNGDSTQFWLEDWSG 376
+ GG W + GL + +G G +FW E+W G
Sbjct: 363 FEDGGGGWMQRGLCRRIGEGTEVKFWNENWLG 458
>AV412895
Length = 405
Score = 88.6 bits (218), Expect = 3e-18
Identities = 46/136 (33%), Positives = 71/136 (51%), Gaps = 1/136 (0%)
Frame = +1
Query: 454 EGFYTVNNAYLFMQGDE-GEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGV 512
+G ++VN++++F+ EPD +W P P N+KAF W+++L RI R L +R V
Sbjct: 1 QGGFSVNSSFVFL*DQYLEEPDPVFN*IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQV 180
Query: 513 IDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPH 572
I D C LC E+ +HL+ SC++ + +W C L A P H L F
Sbjct: 181 IHNALDAICPLCGLAEESGSHLLFSCAESMLIWYECFAWLGVSTAQVSDP-KVHLLQFSS 357
Query: 573 HGRNATQRHGEYAVWL 588
GR+ Q+ GE +W+
Sbjct: 358 IGRSKAQKLGETTIWM 405
>BP056597
Length = 414
Score = 83.6 bits (205), Expect = 9e-17
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 384 YHRLYNLSRQKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNR 443
+ L+ +S Q+ +IV+MG W+ W W FSW+ +S + + M + V L+ +
Sbjct: 9 FDSLFLISNQQNCKIVEMGHWLENKWVWDFSWKNPISGEDVLKLGVMKQIVSSFSLINGK 188
Query: 444 SDVWRWPPNSEGFYTVNNAYLFMQG-DEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIP 502
D W W +G Y+V +AY + G D + +LW A PSN A W++ L+RI
Sbjct: 189 KDTWVWILEGDGQYSVKSAYDLLSGLDTTIGISVFSKLWKACAPSNAVALGWRVFLDRIQ 368
Query: 503 CRQQLQRRGV 512
+ L RR V
Sbjct: 369 TKDNLSRRHV 398
>AV414139
Length = 309
Score = 79.3 bits (194), Expect = 2e-15
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = -2
Query: 401 MGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVN 460
MG+W W W+F WRR LS RE+ + + + V L Q D W+W ++E YTV
Sbjct: 299 MGQWHNGVWEWEFRWRRELSVREQRQEADLIQALAGVCLQQGTEDRWKWTLDTEDIYTVR 120
Query: 461 NAYLFMQGDEGEPDAAL-KRLWAAPVPSNVKAFAWKLML 498
+AY + + D+ + +++W PSN AF W+L+L
Sbjct: 119 SAY*LLLDPIADSDSEVYEKVWVGIAPSNANAFVWRLLL 3
>AV428268
Length = 429
Score = 71.6 bits (174), Expect = 3e-13
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
Frame = +3
Query: 457 YTVNNAYLFMQG-DEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDA 515
Y+V +AY F+ G + D K LW+ VPSN A +WK+++NR+ + L RRGV+ +
Sbjct: 6 YSVKSAYDFLHGCANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVIS 185
Query: 516 QSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGR 575
C LC + E++ HL+ SC V +W + +++ HFL
Sbjct: 186 N---VCPLCSLDEESTDHLLFSCPIV*RIWSKISE*F-GVFSVFPNDSHGHFLQHLGSCG 353
Query: 576 NATQRHGEYAVWLALTWSVWLLRN 599
+ R + VW+A +W RN
Sbjct: 354 SLNFRKRGWFVWIAAVVCIWQGRN 425
>AV418280
Length = 398
Score = 65.5 bits (158), Expect = 2e-11
Identities = 32/92 (34%), Positives = 47/92 (50%)
Frame = -2
Query: 518 DVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGRNA 577
D++C C E S HL +C +G+W+A + L A ++ +F F RN
Sbjct: 397 DLTCPFCTTVEECSGHLFFTCVFSMGVWQALHRWLGISVALPASTLA-NFAQFSITARNK 221
Query: 578 TQRHGEYAVWLALTWSVWLLRNEILFGTAVYD 609
QR GE A+W+A WS+W+ RN I+F D
Sbjct: 220 NQRLGELAIWIATVWSLWIQRNSIIFRNNALD 125
>AU089037
Length = 245
Score = 63.2 bits (152), Expect = 1e-10
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -1
Query: 478 KRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLS 537
++LW P PSN +FAW+L+L+R+ R L+RR VI + C +C + E+S+HL S
Sbjct: 197 QKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESSSHLFFS 18
Query: 538 C 538
C
Sbjct: 17 C 15
>TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane protein-like,
partial (10%)
Length = 879
Score = 62.8 bits (151), Expect = 2e-10
Identities = 31/80 (38%), Positives = 42/80 (51%)
Frame = -1
Query: 393 QKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPN 452
QK I+++G+ V W W F RRN S RE V +C + V L ++ +D W W N
Sbjct: 816 QKNELILNLGKRVEGVWTWSFIRRRNPSTRENLLVADLCNLLESVPLSEDTNDSWSWTAN 637
Query: 453 SEGFYTVNNAYLFMQGDEGE 472
EG YTV AY F++ E
Sbjct: 636 PEGQYTVQTAYKFLRASSNE 577
>CN825238
Length = 692
Score = 60.1 bits (144), Expect = 1e-09
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Frame = +3
Query: 444 SDVWRWPPNSEGFYTVNNAYLFMQ-------GDEGEPDAALKRLWAAPVPSNVKAFAWKL 496
S +WRW N G ++V +AY +Q K+LW PVP+ +K FA+++
Sbjct: 411 SCLWRWSRN--GAFSVRSAYYNIQVAKEMQTSSSAASSFPWKKLWRTPVPNKMKHFAYRV 584
Query: 497 MLNRIPCRQQLQRRGVIDAQSDVSCALCHEEV-ETSAHL 534
N IPCR+ LQRRG I Q++ C C+ ++ E+ +HL
Sbjct: 585 ARNIIPCRENLQRRG-IAVQNE--CPTCNHQIPESMSHL 692
>AV427022
Length = 429
Score = 59.3 bits (142), Expect = 2e-09
Identities = 30/91 (32%), Positives = 47/91 (50%)
Frame = +1
Query: 521 CALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGRNATQR 580
C LC E+ +HL+ SCS + + C+ L A P H L F G + Q+
Sbjct: 40 CPLCCLAEESGSHLLFSCSNSMLI*YECHAWLGVSTAQVSDP-KVHLLQFSSIGWSKAQK 216
Query: 581 HGEYAVWLALTWSVWLLRNEILFGTAVYDQE 611
GE A+W+++ WS+W LRN ++F D++
Sbjct: 217 LGESAIWMSVLWSIWCLRNMVVFNGGELDKD 309
>BP060613
Length = 378
Score = 57.4 bits (137), Expect = 7e-09
Identities = 26/64 (40%), Positives = 38/64 (58%)
Frame = +1
Query: 262 LWGGSPEERRIAWVSWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVI 321
+W S R + W W+ + + KD GGLG KD+ N A+L K WR L + ++LW Q++
Sbjct: 43 VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 322 KAKY 325
KA Y
Sbjct: 223 KALY 234
>BP028574
Length = 454
Score = 57.0 bits (136), Expect = 9e-09
Identities = 28/71 (39%), Positives = 40/71 (55%), Gaps = 1/71 (1%)
Frame = +3
Query: 438 VLVQNRSDVWRWPPNSEGFYTVNNAYLFMQGDEGE-PDAALKRLWAAPVPSNVKAFAWKL 496
VL N D W W + G +TV +AY + G+ E D ++LW + PSN A AW++
Sbjct: 240 VLSINHRDSWVWIKDGSGSFTVKSAYEELHGEIQEIEDNFFRKLWQSKAPSNSIALAWRV 419
Query: 497 MLNRIPCRQQL 507
LNR+PC +L
Sbjct: 420 GLNRVPCMAEL 452
>AV411435
Length = 426
Score = 52.8 bits (125), Expect = 2e-07
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Frame = +3
Query: 449 WPPNSEGFYTVNNAYLFMQGDE----------GEPDAAL-KRLWAAPVPSNVKAFAWKLM 497
WP G Y+V + Y ++ + P + L +W A VP V++F W+
Sbjct: 51 WPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSFLWRAA 230
Query: 498 LNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEAC 548
N IP ++ L+RR + D C +C++ E H +L+C +W C
Sbjct: 231 NNAIPVKRNLKRRNM---GRDDFCPICNKGPEDINHALLACEWTRAVWFGC 374
>TC20217
Length = 561
Score = 50.4 bits (119), Expect = 8e-07
Identities = 27/76 (35%), Positives = 38/76 (49%)
Frame = +1
Query: 534 LMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGRNATQRHGEYAVWLALTWS 593
L+ SC L +W C + P +H L F G QR G A+WLA+ W+
Sbjct: 304 LLFSCPVSLDIWRHCYRWMGVCTTLPRNP-RQHLL*FQFGGNKKHQR-GADAIWLAVIWT 477
Query: 594 VWLLRNEILFGTAVYD 609
+WL+RNEI+F + D
Sbjct: 478 LWLIRNEIIFRNGMLD 525
>AV426437
Length = 303
Score = 45.1 bits (105), Expect = 3e-05
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 269 ERRIAWVSWERICKPKDFGGLGLKDW 294
+R+IAW++WE ICKPK GLG+K+W
Sbjct: 220 QRKIAWINWETICKPKWLRGLGVKNW 297
>AU089120
Length = 586
Score = 44.3 bits (103), Expect = 6e-05
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +2
Query: 507 LQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLN-SIYAPSLGPISE 565
L+RR +I S + C E+ HL C + LW + + L ++ P G +
Sbjct: 8 LKRRRIIQTLS----SFCLHSEESIPHLFFRCFQSWNLWSSVHRWLVFTVVTPEEGKM-- 169
Query: 566 HFLHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILF 603
HF+ F + ++G +WL+ W +W LRN+++F
Sbjct: 170 HFIMF*DYYSGRDIKNGLGFIWLSTIWFIWHLRNKVVF 283
>CB826728
Length = 509
Score = 42.7 bits (99), Expect = 2e-04
Identities = 27/104 (25%), Positives = 45/104 (42%), Gaps = 11/104 (10%)
Frame = +1
Query: 446 VWRWPPNSEGFYTVNNAYLFMQGDEGE-----------PDAALKRLWAAPVPSNVKAFAW 494
V+ WP +S+G+Y+ + Y F++ + P K +W+A K W
Sbjct: 205 VFFWPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMW 384
Query: 495 KLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSC 538
+ +P R L+RRG+ D S E E H++L+C
Sbjct: 385 RACAGYLPVRSALKRRGL---DVDPSSPWSGLEDEAEVHVLLTC 507
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.336 0.146 0.539
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,113,780
Number of Sequences: 28460
Number of extensions: 280604
Number of successful extensions: 2703
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 2607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of query: 611
length of database: 4,897,600
effective HSP length: 96
effective length of query: 515
effective length of database: 2,165,440
effective search space: 1115201600
effective search space used: 1115201600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0067a.8