BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067a.6
(713 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP033881 107 5e-24
BP084855 102 2e-22
BP070082 79 2e-15
BP057603 42 4e-04
BP069078 39 0.004
TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, pa... 37 0.008
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 33 0.21
TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 32 0.35
BP085186 32 0.35
TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein... 32 0.35
AV418706 32 0.35
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 32 0.46
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 32 0.46
AV416122 31 0.60
BP034655 31 0.78
AV406797 31 0.78
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 30 1.0
TC16191 similar to GB|AAO39946.1|28372928|BT003718 At1g49880 {Ar... 30 1.0
AV773558 30 1.0
AV411437 30 1.3
>BP033881
Length = 528
Score = 107 bits (268), Expect = 5e-24
Identities = 53/68 (77%), Positives = 60/68 (87%)
Frame = +2
Query: 1 MKLPSMSTQNFSISSLELTSPSTEGKVSAPTVIEIHSSPSTHEDSGPAGSVDSILSSNGD 60
MKLPSMS +FS+SSLEL+SPSTEG + AP+VIEI SSPS HEDSGPA SVDS+LSSNGD
Sbjct: 314 MKLPSMSLNSFSVSSLELSSPSTEGGIYAPSVIEIQSSPSIHEDSGPADSVDSVLSSNGD 493
Query: 61 LSSPEWRS 68
LSS EWR+
Sbjct: 494 LSSXEWRT 517
>BP084855
Length = 373
Score = 102 bits (254), Expect = 2e-22
Identities = 48/83 (57%), Positives = 64/83 (76%)
Frame = -2
Query: 631 QIRMFEPGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDE 690
QI + EP FDLS IG+LK+IKDGQV+GDDDV +DLLPQFN ESE EEE ED + ++K+
Sbjct: 372 QISVVEPDFDLSCIGFLKEIKDGQVVGDDDVDIDLLPQFNSESEYEEEKCEDGHGEDKNG 193
Query: 691 DQEKENPQVGTSQGNDVNNDNVA 713
D+ + +P+ SQ N+ NN+N+A
Sbjct: 192 DEGENDPKAAASQDNNANNENLA 124
>BP070082
Length = 489
Score = 79.3 bits (194), Expect = 2e-15
Identities = 35/54 (64%), Positives = 46/54 (84%)
Frame = -1
Query: 621 FAQGFLAAKEQIRMFEPGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESE 674
+ +GF+AAKEQ+ + +P FDLSRIG+LK I+DGQVIG DD+ LDLLP+F+ ESE
Sbjct: 345 YVEGFVAAKEQVSVVDPDFDLSRIGFLKKIQDGQVIGHDDIDLDLLPKFDSESE 184
>BP057603
Length = 538
Score = 41.6 bits (96), Expect = 4e-04
Identities = 26/87 (29%), Positives = 43/87 (48%)
Frame = -3
Query: 570 DLAASDLLLQKTKSLKETINDKHTAAQAKCQKLEKKYERLNASILGRASLQFAQGFLAAK 629
DL +L +K K+L ++ + C+ LE + E L G +L++A GF A
Sbjct: 476 DLKIKELEDEK-KNLVTSLEIDRDVLKVTCENLEAEVEELK----GEVALKYASGFEKAL 312
Query: 630 EQIRMFEPGFDLSRIGYLKDIKDGQVI 656
Q+R P +L G K +KDG+++
Sbjct: 311 MQVRFLYPNSNLEETGPFKVVKDGKLV 231
>BP069078
Length = 452
Score = 38.5 bits (88), Expect = 0.004
Identities = 27/111 (24%), Positives = 53/111 (47%)
Frame = -2
Query: 546 AKADAETANKNLKAAEEKCAKLTDDLAASDLLLQKTKSLKETINDKHTAAQAKCQKLEKK 605
++ D + K L E + + DL +L +K K+L ++ H + C+ E +
Sbjct: 451 SEKDLDDLRKKLDTLELE--NIEKDLKIKELEKEK-KNLVTSLEIDHAVLKVTCENHEAE 281
Query: 606 YERLNASILGRASLQFAQGFLAAKEQIRMFEPGFDLSRIGYLKDIKDGQVI 656
E L + + ++++A GF A Q+R P +L G + ++DG+V+
Sbjct: 280 VEELKSEV----AVKYASGFDKAIMQVRFLYPNSNLEETGPSQVLQDGKVV 140
>TC19515 similar to UP|Q9YGK0 (Q9YGK0) Vitellogenin precursor, partial (3%)
Length = 504
Score = 37.4 bits (85), Expect = 0.008
Identities = 12/44 (27%), Positives = 30/44 (67%)
Frame = +3
Query: 670 NDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNNDNVA 713
+D+S+P++ + ED + + D+D + E+P +G G + ++D+++
Sbjct: 57 DDDSDPDDAESEDEEDDDDDDDGDDEDPLLGPGLGRESDSDDMS 188
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 32.7 bits (73), Expect = 0.21
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 652 DGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGND 706
D + DDD D + +D+ + +++DGE+ E + D+D+E+E + +G D
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDDDDDDDDDGEE-EEDDDDDDEEEEGSEEVEVEGKD 407
Score = 31.2 bits (69), Expect = 0.60
Identities = 10/39 (25%), Positives = 27/39 (68%)
Frame = +3
Query: 672 ESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVNND 710
++E EE+D E+ +++++D+D + ++ G + +D ++D
Sbjct: 246 DNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDD 362
Score = 27.3 bits (59), Expect = 8.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 661 VSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKE 695
V D + +D+ E ++ED +D ++ + D+D E+E
Sbjct: 237 VQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEE 341
>TC8582 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (65%)
Length = 1341
Score = 32.0 bits (71), Expect = 0.35
Identities = 33/147 (22%), Positives = 60/147 (40%)
Frame = +1
Query: 567 LTDDLAASDLLLQKTKSLKETINDKHTAAQAKCQKLEKKYERLNASILGRASLQFAQGFL 626
LTDD ASD E+ ++ + + K E K E +A + A A G
Sbjct: 355 LTDDGDASDF--------SESDEEEEELMEQENGKPETKTE--DAKVAKTAKPAAAAG-- 498
Query: 627 AAKEQIRMFEPGFDLSRIGYLKDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQ 686
+ +Q+++ +P K + D DVS + + D+ +ED +D ++
Sbjct: 499 PSAKQVKIVDP-------------KKDEEEADLDVSSPDVSGYEDDLISADEDSDDESDD 639
Query: 687 NKDEDQEKENPQVGTSQGNDVNNDNVA 713
D+++E P QG N++ +
Sbjct: 640 ESDDEEETPTPAKKVDQGKKRPNESAS 720
>BP085186
Length = 388
Score = 32.0 bits (71), Expect = 0.35
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 4/63 (6%)
Frame = -1
Query: 650 IKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKD----EDQEKENPQVGTSQGN 705
I +G++I D+ + N+E E EEE+ E+ E+ ++ E+++ E V T +G
Sbjct: 310 IVNGKLISPDNAD----GEGNEEEEEEEEEEEEEEEEEEEEAEPEEEKNEEENVNTQEGE 143
Query: 706 DVN 708
N
Sbjct: 142 GEN 134
>TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein, partial
(15%)
Length = 521
Score = 32.0 bits (71), Expect = 0.35
Identities = 14/36 (38%), Positives = 25/36 (68%)
Frame = +3
Query: 671 DESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGND 706
D+ + EDGED +E ++DEDQ+ E+P+ + + +D
Sbjct: 183 DDEMQDSEDGED-SEGSEDEDQDGEDPEEASLEDDD 287
Score = 29.3 bits (64), Expect = 2.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 657 GDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQE 693
GDD++ + ++ SE E++DGED E + ++D E
Sbjct: 180 GDDEMQDSEDGEDSEGSEDEDQDGEDPEEASLEDDDE 290
>AV418706
Length = 374
Score = 32.0 bits (71), Expect = 0.35
Identities = 27/88 (30%), Positives = 34/88 (37%)
Frame = +1
Query: 362 LAQSAAMVKKRAAEAEQKKKNEGTSGSDNVRDPKRQKTSSATGGRPLHQSTQSTLDPKDR 421
LA +AA V AA + + +S S + P TSS T S S P +
Sbjct: 133 LAAAAATVA--AAHSSAGSSSSSSSSSSSSAPPAPSSTSSTTLNALPSPSRHSNFPPSNS 306
Query: 422 PAEKKKGHDNVPPTQPDSSALINRPPTP 449
P PP P SS + PPTP
Sbjct: 307 PPP--------PPPSPPSSNSHSPPPTP 366
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA binding
protein 7 {Arabidopsis thaliana;} , partial (19%)
Length = 483
Score = 31.6 bits (70), Expect = 0.46
Identities = 20/43 (46%), Positives = 23/43 (52%)
Frame = +3
Query: 433 PPTQPDSSALINRPPTPFTQAGPSSAIGGETPPLLSLSDPHFN 475
PP P ++A RPP P TQ P A+ PPL S S PH N
Sbjct: 18 PPATP-TTADGRRPPPPSTQPPPPGALR-PPPPLHSPSRPHHN 140
Score = 28.5 bits (62), Expect = 3.9
Identities = 24/89 (26%), Positives = 33/89 (36%), Gaps = 8/89 (8%)
Frame = +2
Query: 385 TSGSDNVRDPKRQKTSSATGGRPLHQSTQS--------TLDPKDRPAEKKKGHDNVPPTQ 436
T+G+ N R+ SSAT P S S +L P +P+ PP
Sbjct: 17 TAGNTN----HRRWPSSATAVNPTSASRSSPTTAPASLSLSPPPQPSNPPPPPPLPPPEM 184
Query: 437 PDSSALINRPPTPFTQAGPSSAIGGETPP 465
P S A + P+ T S +PP
Sbjct: 185 PSSPATLKSSPSSATATAAPSTKSTTSPP 271
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 31.6 bits (70), Expect = 0.46
Identities = 21/79 (26%), Positives = 32/79 (39%)
Frame = -2
Query: 394 PKRQKTSSATGGRPLHQSTQSTLDPKDRPAEKKKGHDNVPPTQPDSSALINRPPTPFTQA 453
PK +SS++ S+ S P RP + PP+ SS+ + P P +
Sbjct: 237 PKSSSSSSSSSSSSSSSSSSSGSPPPPRPP-------STPPSSSSSSSSSSSSPPPGASS 79
Query: 454 GPSSAIGGETPPLLSLSDP 472
SS+ +P S S P
Sbjct: 78 SSSSSPSSSSPSSSSSSSP 22
>AV416122
Length = 414
Score = 31.2 bits (69), Expect = 0.60
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 658 DDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKEN 696
+DD D QF E E EE+D ED+ E++++ED E ++
Sbjct: 261 NDDNEPDNDVQF--EGEEEEDDEEDKEEEDEEEDDEDDD 371
>BP034655
Length = 517
Score = 30.8 bits (68), Expect = 0.78
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +1
Query: 656 IGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQGNDVN 708
+ DDD + + +E E EEE+ E+ E +D++++++ + + + V+
Sbjct: 130 LSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYIPVAPSHRVS 288
>AV406797
Length = 418
Score = 30.8 bits (68), Expect = 0.78
Identities = 19/54 (35%), Positives = 27/54 (49%)
Frame = +1
Query: 397 QKTSSATGGRPLHQSTQSTLDPKDRPAEKKKGHDNVPPTQPDSSALINRPPTPF 450
+K S+ GR + + S D P+ +K PP+QP SS N+PP PF
Sbjct: 193 EKPSAGVVGRKTYSRSVSWTDGS--PSRRKPP----PPSQPPSSNSSNKPPRPF 336
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 30.4 bits (67), Expect = 1.0
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = -2
Query: 651 KDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEKENPQ 698
+DG+ DDD + + +D E EEE+G + E N+DE++++E+ +
Sbjct: 416 EDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVE-EEDNEDEEEDEEDEE 276
Score = 30.0 bits (66), Expect = 1.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 667 PQFNDESEPEEEDGEDRNEQNKDEDQEKENPQVGTSQ 703
P+ N E E E+EDGED+ + + D++ + E G +
Sbjct: 446 PEENGEDE-EDEDGEDQEDDDDDDEDDDEEDDGGEDE 339
Score = 28.1 bits (61), Expect = 5.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Frame = -2
Query: 672 ESEPEEEDGEDRNEQNKDEDQEKENP----------QVGTSQGNDVNN 709
E + + +GED N+ DED + + P + G GN+ NN
Sbjct: 641 EDKQHDAEGEDGNDDEGDEDDDGDGPFGEGEEDLSSEDGAGYGNNSNN 498
Score = 27.7 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 22/44 (49%)
Frame = -2
Query: 648 KDIKDGQVIGDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDED 691
+D +D +DD D + +E EEED ED E +DE+
Sbjct: 407 EDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDEE 276
>TC16191 similar to GB|AAO39946.1|28372928|BT003718 At1g49880 {Arabidopsis
thaliana;}, partial (60%)
Length = 587
Score = 30.4 bits (67), Expect = 1.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = +2
Query: 155 FSPFICHVLTFLN------VAPCQLQPNAWGFIRCFEILCEHLSCT 194
FS ++CHV +N V PC+ WG + C + CE + T
Sbjct: 269 FSHWLCHVHNVVNRSLGKPVFPCERVDARWGKLECEQKACEIIGST 406
>AV773558
Length = 469
Score = 30.4 bits (67), Expect = 1.0
Identities = 9/38 (23%), Positives = 26/38 (67%)
Frame = -2
Query: 657 GDDDVSLDLLPQFNDESEPEEEDGEDRNEQNKDEDQEK 694
GD+++ D + ++++ + +++D +D ++ DED+E+
Sbjct: 408 GDEELDDDFVLVYSEDDDDDDDDDDDDDDYTDDEDEEE 295
>AV411437
Length = 417
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = +2
Query: 671 DESEPEEEDGEDRN-EQNKDEDQEKENPQVGTSQGNDVNNDNV 712
+E E EEEDG D EQ D++ + E+ ++ T G ++ + V
Sbjct: 68 EEEEEEEEDGVDGELEQFDDDETDSEDDELETEGGGELEDAQV 196
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,384,542
Number of Sequences: 28460
Number of extensions: 202286
Number of successful extensions: 1267
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of query: 713
length of database: 4,897,600
effective HSP length: 97
effective length of query: 616
effective length of database: 2,136,980
effective search space: 1316379680
effective search space used: 1316379680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0067a.6