BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067a.13
(212 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV417280 38 0.001
BP033767 34 0.017
AW719831 34 0.022
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras... 34 0.022
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 32 0.063
BI420796 32 0.063
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 32 0.082
TC14393 similar to UP|Q93YA8 (Q93YA8) Calcium binding protein, p... 32 0.11
TC15102 similar to UP|Q7X9B3 (Q7X9B3) 9/13 hydroperoxide lyase, ... 32 0.11
BI417928 32 0.11
TC9027 weakly similar to UP|AAQ82447 (AAQ82447) SufB, partial (51%) 31 0.14
TC16241 weakly similar to UP|Q91TH4 (Q91TH4) T122, partial (7%) 31 0.14
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 31 0.14
TC7814 similar to UP|Q9LKJ6 (Q9LKJ6) Water-selective transport i... 31 0.14
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 31 0.18
TC9030 similar to GB|AAM63479.1|21554372|AY086477 phospholipase-... 31 0.18
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 31 0.18
AV411518 31 0.18
TC9990 similar to UP|Q9FJW0 (Q9FJW0) RuvB DNA helicase-like prot... 30 0.24
BP042991 30 0.24
>AV417280
Length = 427
Score = 37.7 bits (86), Expect = 0.001
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAK---SKS 69
PP +SRK SS S+P+ + PL + PG ++ + +PTVS SPA + +
Sbjct: 94 PPSSNSRK--SSAIRPSSPLGMPPLTVVTLPGKASHVTQTPKPTVSTTSTSPASPSLAPT 267
Query: 70 PLVPL 74
P +PL
Sbjct: 268 PSLPL 282
>BP033767
Length = 541
Score = 34.3 bits (77), Expect = 0.017
Identities = 19/47 (40%), Positives = 25/47 (52%)
Frame = +1
Query: 30 APVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLVPLSN 76
+P P ++KPP P+ PT SS P + SPA S S L P S+
Sbjct: 349 SPPTSPPSSSLKPPNPNPPTSSSASP----LPPSPAPSPSSLSPPSS 477
>AW719831
Length = 436
Score = 33.9 bits (76), Expect = 0.022
Identities = 20/63 (31%), Positives = 29/63 (45%)
Frame = +1
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLV 72
PP +R SS ++A + P T P P+TP S + S SP+ SP+
Sbjct: 235 PPPPHARS--SSCAATAAKSSPAPTTTTSPTSPATPRSSPSTASSSSPPSSPSSLPSPIP 408
Query: 73 PLS 75
P+S
Sbjct: 409 PIS 417
>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
precursor , partial (81%)
Length = 1355
Score = 33.9 bits (76), Expect = 0.022
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +2
Query: 2 SEKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKT-----IKPPGPSTPTKSSQRPT 56
S K TSRD PP S + + +SAP P + PP S + +S P+
Sbjct: 395 SPKTTSRDS--PPTRPSTTSSPAWSSASAPAPPPPSSSPSSASFSPPANSPTSSASPPPS 568
Query: 57 VSQIVQSPAKSKSP---LVPLSNKYSILDYQNTISS 89
+ + P+ S+SP +P S S ++T+SS
Sbjct: 569 ARRSRRDPSASRSPSSTTIPASISPSTAPTRSTLSS 676
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 32.3 bits (72), Expect = 0.063
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 13 PPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLV 72
PP S+ P S T + P + +P T P PSTP+ PT + + +P S S
Sbjct: 300 PPPTSASPPPPSSTPNGTPPSSSPATTPSPSRPSTPSS----PTRASLPSAPGFSSSEET 467
Query: 73 P 73
P
Sbjct: 468 P 470
Score = 27.7 bits (60), Expect = 1.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 17 SSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSPAKSKSPLVP 73
SS S + ++A + TP PP ++P S P + SPA + SP P
Sbjct: 228 SSTPPTSPTSAAAATSSATPPSPSPPPTSASPPPPSSTPNGTPPSSSPATTPSPSRP 398
>BI420796
Length = 552
Score = 32.3 bits (72), Expect = 0.063
Identities = 24/70 (34%), Positives = 31/70 (44%)
Frame = +1
Query: 1 MSEKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQI 60
+S P+S D P L SS SS+ SAP A P ++ PP +T PT
Sbjct: 208 LSSLPSSTDPT-PSLSSSPSSSSSLGSPSAPTAPPPTLSLAPPSTTT-----SWPTSEDS 369
Query: 61 VQSPAKSKSP 70
Q P+ SP
Sbjct: 370 PQPPSLPVSP 399
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 32.0 bits (71), Expect = 0.082
Identities = 21/62 (33%), Positives = 30/62 (47%)
Frame = +2
Query: 2 SEKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIV 61
S +S G P SS PSS GSS+ + T L ++ P PS SS R + ++
Sbjct: 284 SSSSSSSPSSGTPSPSSSSSPSSSPGSSSSSSATAL-SLSSPAPSITVSSSPRSGLLPLL 460
Query: 62 QS 63
+S
Sbjct: 461 RS 466
>TC14393 similar to UP|Q93YA8 (Q93YA8) Calcium binding protein, partial
(85%)
Length = 786
Score = 31.6 bits (70), Expect = 0.11
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 23 SSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRP-TVSQIVQSPAK 66
SSI+ SS P A +T+ PP +TP+ S+ R T S ++S A+
Sbjct: 304 SSISPSSPPSAAPTPRTVVPPSSTTPSSSTTRTRTASSPLRSSAR 438
>TC15102 similar to UP|Q7X9B3 (Q7X9B3) 9/13 hydroperoxide lyase, partial
(68%)
Length = 1097
Score = 31.6 bits (70), Expect = 0.11
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Frame = +1
Query: 3 EKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPG---------PSTPTKSSQ 53
EKP S PP +S S I P + T PPG PS KSS
Sbjct: 583 EKPASTPPSAPPRSTSSSSSSPINTPRKPSSATKAPASSPPGSELSLHHSPPSASRKSST 762
Query: 54 RPTVS 58
P +S
Sbjct: 763 TPKIS 777
>BI417928
Length = 509
Score = 31.6 bits (70), Expect = 0.11
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +2
Query: 5 PTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQSP 64
PT PP SS P ++ SS P T PP P+TP +++ TV+ + +P
Sbjct: 191 PTLSPPPPPPPRSSTPPPLRLSSSSPWPPFCP--TSPPPKPTTPPTTAKATTVASPLPTP 364
Query: 65 AKSKSP 70
+ SP
Sbjct: 365 PTTPSP 382
>TC9027 weakly similar to UP|AAQ82447 (AAQ82447) SufB, partial (51%)
Length = 1016
Score = 31.2 bits (69), Expect = 0.14
Identities = 31/93 (33%), Positives = 40/93 (42%), Gaps = 14/93 (15%)
Frame = +2
Query: 2 SEKPTS-RDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGP----------STPTK 50
S PTS + PP P++ T S+ A TPL PP P +T T+
Sbjct: 113 SANPTSTQTSQSPP-------PATTTNPSSESAPTPLPPPHPPPPTTKSARSSATATTTR 271
Query: 51 SSQRPTVSQIVQSPAKS---KSPLVPLSNKYSI 80
+S P+ S SP S +S PLSNK I
Sbjct: 272 NSASPSTSTPSPSPRVSPWKQSD*SPLSNKNPI 370
>TC16241 weakly similar to UP|Q91TH4 (Q91TH4) T122, partial (7%)
Length = 799
Score = 31.2 bits (69), Expect = 0.14
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Frame = +1
Query: 5 PTSRDQY--GPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQIVQ 62
PTS+ Y PP S P+S ++ A TP + +PP STP KS+ + + Q
Sbjct: 49 PTSQPPYIATPPNTHS---PTSQPPNTQTPANTPSPSSQPPYLSTPPKSNSPTSQPPVAQ 219
Query: 63 SPAKSKSPLVPLSNKYSILDYQNTISSKTPGKTEQYEYQEKPECLPSVMIEKAWLNCNPR 122
+P + P+S+ S +P Y P PS+ L
Sbjct: 220 TP----RAVTPISS-----------PSSSPTSNSPYPSTNPPSLAPSISTSPPALTPAST 354
Query: 123 DIAKQVFPPN 132
+ PP+
Sbjct: 355 PVPATASPPS 384
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 31.2 bits (69), Expect = 0.14
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Frame = +2
Query: 14 PLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKS---------------SQRPTVS 58
PL S P++ + SS P P P P+TPT S S + +V
Sbjct: 116 PLSSPSPPPANGSASSPPSGSNPSPATTTPSPTTPTPSNPSCTSPSSSSTTSPSLKTSVK 295
Query: 59 QIVQSPAK--SKSPLVPLSN 76
V SPA + SPL P S+
Sbjct: 296 PSVSSPASPPTSSPLGPSSS 355
>TC7814 similar to UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic
membrane protein 1, partial (37%)
Length = 660
Score = 31.2 bits (69), Expect = 0.14
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Frame = +2
Query: 1 MSEKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPL----KTIKPPGP--STPTKSSQR 54
+ KPT P L SS P S + S APV +P T+ PP P S P
Sbjct: 410 LRRKPTQTP*GXPXLSSS---PPSSSSSPAPVPESPTINSPMTVPPPPPXSSPPPSPMHS 580
Query: 55 PTVSQIVQSPAKSKSPLVPLSNKYS 79
P+ S SP + P S S
Sbjct: 581 PSSSPSXSSPTSPAATSTPXSPSXS 655
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 30.8 bits (68), Expect = 0.18
Identities = 37/135 (27%), Positives = 49/135 (35%), Gaps = 7/135 (5%)
Frame = +1
Query: 13 PPLGSSRKLPSSITGSSAPVAVTP-----LKTIKPPGPSTPTKSSQR--PTVSQIVQSPA 65
PP S P S P + +P K+ PP PS P + P S I P
Sbjct: 145 PPPPSHSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPIPHPPY 324
Query: 66 KSKSPLVPLSNKYSILDYQNTISSKTPGKTEQYEYQEKPECLPSVMIEKAWLNCNPRDIA 125
KSP P S+ Y + +P Y Y P PS ++ +P
Sbjct: 325 YYKSPPPPTSSPPPPYHYVSP-PPPSPSPPPPYHYASPPP--PSPSPAPTYIYKSPPPPV 495
Query: 126 KQVFPPNFHYMSGHP 140
K + PP +HY S P
Sbjct: 496 K-LPPPPYHYTSPPP 537
>TC9030 similar to GB|AAM63479.1|21554372|AY086477 phospholipase-like
protein {Arabidopsis thaliana;}, partial (53%)
Length = 596
Score = 30.8 bits (68), Expect = 0.18
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = +1
Query: 8 RDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPST------PTKSSQ-RPTVSQI 60
R P S P+S GSS+ T K PP PST PT SS+ P +
Sbjct: 211 RPNQSEPSPSCTASPASQAGSSSSPPYTSPKPDSPPAPSTTRDTASPTGSSRTSPMSTPS 390
Query: 61 VQSPAKSKSPLVPLS 75
+ ++S P VP S
Sbjct: 391 SMTASRSSIPSVPAS 435
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 30.8 bits (68), Expect = 0.18
Identities = 23/89 (25%), Positives = 36/89 (39%)
Frame = +1
Query: 1 MSEKPTSRDQYGPPLGSSRKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQI 60
+S P S P+ S S T P A +P PP P+ SS P+
Sbjct: 148 LSSSPPSSSSSPAPVPESPTTNSPTTAPPPPPASSP-----PPSPTHSPSSSPSPSAPT- 309
Query: 61 VQSPAKSKSPLVPLSNKYSILDYQNTISS 89
SPA + +P P ++ ++ + +SS
Sbjct: 310 --SPAATSTPPSPSASSSAVTSPSSAVSS 390
>AV411518
Length = 360
Score = 30.8 bits (68), Expect = 0.18
Identities = 24/73 (32%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
Frame = +3
Query: 5 PTSRDQYGPPLGSS----RKLPSSITGSSAPVAVTPLKTIKPPGPSTPTKSSQRPTVSQI 60
PTS P S+ R PSS +G ++P TP PP P++ + SS P S
Sbjct: 165 PTSSGPASPSPSSTAPSPRPNPSSTSGPTSPTPHTP----SPPPPTSSSPSSAIPPTS-- 326
Query: 61 VQSPAKSKSPLVP 73
+P+ S P P
Sbjct: 327 --APSSSTPPPAP 359
>TC9990 similar to UP|Q9FJW0 (Q9FJW0) RuvB DNA helicase-like protein
(AT5g67630/K9I9_20), partial (39%)
Length = 642
Score = 30.4 bits (67), Expect = 0.24
Identities = 25/79 (31%), Positives = 34/79 (42%), Gaps = 14/79 (17%)
Frame = +3
Query: 13 PPLGSSRKL---PSSITGSSAPVAVTPLK-----------TIKPPGPSTPTKSSQRPTVS 58
PP SSR L S + SS+P ++ P + KPP P +P SS R
Sbjct: 231 PPASSSR*LRTAKSPVAPSSSPASLEPARPPSPWVWPSPSASKPPSP*SPAASSSRLRCR 410
Query: 59 QIVQSPAKSKSPLVPLSNK 77
++ S S PLV S +
Sbjct: 411 RLRLSHRPSVRPLVFASRR 467
>BP042991
Length = 534
Score = 30.4 bits (67), Expect = 0.24
Identities = 21/91 (23%), Positives = 43/91 (47%)
Frame = +1
Query: 57 VSQIVQSPAKSKSPLVPLSNKYSILDYQNTISSKTPGKTEQYEYQEKPECLPSVMIEKAW 116
+S ++ P SP++P ++LD + + K Q +++ K + ++ + +
Sbjct: 79 LSFMISMPPVRDSPVLP-----TVLDAIDAKLASMATKL-QIDFESKISTISGLIDQVSS 240
Query: 117 LNCNPRDIAKQVFPPNFHYMSGHPSKGRLFY 147
LNC+ RDI Q P + + S +P +Y
Sbjct: 241 LNCHLRDIPPQPPPFTYSFTSSYPQPAPDYY 333
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,908,134
Number of Sequences: 28460
Number of extensions: 58736
Number of successful extensions: 537
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of query: 212
length of database: 4,897,600
effective HSP length: 86
effective length of query: 126
effective length of database: 2,450,040
effective search space: 308705040
effective search space used: 308705040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0067a.13