TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0066.6
         (137 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14351 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing f...   279  1e-76
TC14352 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing f...   254  5e-69
AU089014                                                              212  2e-56
TC9484 similar to UP|ADF5_ARATH (Q9ZNT3) Actin-depolymerizing fa...   165  2e-42
AU252005                                                              156  1e-39
TC17526 similar to UP|ADF_VITVI (Q8SAG3) Actin-depolymerizing fa...   126  2e-30
AV767290                                                               84  9e-18
TC18110 similar to UP|PPCK_ARATH (Q9T074) Phosphoenolpyruvate ca...    25  3.6
TC8265 similar to UP|Q8VZH3 (Q8VZH3) At2g13540/T10F5.8, partial ...    25  4.7
AV407490                                                               25  6.2

>TC14351 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
           (ADF 2), partial (95%)
          Length = 953

 Score =  279 bits (713), Expect = 1e-76
 Identities = 137/137 (100%), Positives = 137/137 (100%)
 Frame = +1

Query: 1   MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQVIVEKLGEPGQGYEDFTANLPA 60
           MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQVIVEKLGEPGQGYEDFTANLPA
Sbjct: 103 MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQVIVEKLGEPGQGYEDFTANLPA 282

Query: 61  DECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQ 120
           DECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQ
Sbjct: 283 DECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQ 462

Query: 121 ATDPTEMGLDVFKSRAN 137
           ATDPTEMGLDVFKSRAN
Sbjct: 463 ATDPTEMGLDVFKSRAN 513


>TC14352 similar to UP|ADF2_PETHY (Q9FVI1) Actin-depolymerizing factor 2
           (ADF 2), partial (96%)
          Length = 1311

 Score =  254 bits (648), Expect = 5e-69
 Identities = 125/139 (89%), Positives = 132/139 (94%), Gaps = 2/139 (1%)
 Frame = +1

Query: 1   MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQ--VIVEKLGEPGQGYEDFTANL 58
           MANAASGMAVHDDCKLRF+ELK KRT+RFI+YKIE+KQ  VIVEKLGEP QGYEDF A L
Sbjct: 613 MANAASGMAVHDDCKLRFVELKAKRTHRFIIYKIEEKQKQVIVEKLGEPAQGYEDFAACL 792

Query: 59  PADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 118
           PADECRYAVYDFE+LTEGNVPKSRIFF+AWSPDTSRVRSKMIYASSKDRFKRELDGIQIE
Sbjct: 793 PADECRYAVYDFEFLTEGNVPKSRIFFVAWSPDTSRVRSKMIYASSKDRFKRELDGIQIE 972

Query: 119 LQATDPTEMGLDVFKSRAN 137
           LQATDPTE+GLDVFKSR N
Sbjct: 973 LQATDPTEVGLDVFKSRVN 1029


>AU089014 
          Length = 566

 Score =  212 bits (540), Expect = 2e-56
 Identities = 97/135 (71%), Positives = 118/135 (86%)
 Frame = +1

Query: 1   MANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQVIVEKLGEPGQGYEDFTANLPA 60
           MANAASGMAVHDDCKLRF ELK+KR+YRFIV+KIE++QV+V+KLG+P   Y+DF A+ P 
Sbjct: 73  MANAASGMAVHDDCKLRFQELKSKRSYRFIVFKIEEQQVVVDKLGQPSDSYDDFMASFPD 252

Query: 61  DECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQ 120
           +ECRYAVYDF+++T+ N  KS+IFF AWSPD SRVR  M+YASSKDRFKRELDGIQ+ELQ
Sbjct: 253 NECRYAVYDFDFITDENCQKSKIFFFAWSPDISRVRMXMVYASSKDRFKRELDGIQVELQ 432

Query: 121 ATDPTEMGLDVFKSR 135
           ATDP+EM LD+ K +
Sbjct: 433 ATDPSEMSLDIVKGQ 477


>TC9484 similar to UP|ADF5_ARATH (Q9ZNT3) Actin-depolymerizing factor 5
           (ADF-5) (AtADF5), complete
          Length = 537

 Score =  165 bits (418), Expect = 2e-42
 Identities = 78/135 (57%), Positives = 105/135 (77%), Gaps = 2/135 (1%)
 Frame = +2

Query: 4   AASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQ--VIVEKLGEPGQGYEDFTANLPAD 61
           A +GM V D+CK  FME+K K+ +R+IV+KI+++   V V+K+G PG+ Y D  A+LP D
Sbjct: 101 ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDERSRLVTVDKVGGPGESYADLAASLPGD 280

Query: 62  ECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQA 121
           +CRYAV+DF+++T  N  KS+IFFIAWSP  SR+R+K++YA+SKD  +R LDGI  ELQA
Sbjct: 281 DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDG*RRALDGISYELQA 460

Query: 122 TDPTEMGLDVFKSRA 136
           TDPTEMGLDV + RA
Sbjct: 461 TDPTEMGLDVIQDRA 505


>AU252005 
          Length = 317

 Score =  156 bits (395), Expect = 1e-39
 Identities = 71/105 (67%), Positives = 88/105 (83%)
 Frame = +2

Query: 3   NAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQVIVEKLGEPGQGYEDFTANLPADE 62
           NAASGMAV D+CKL+F+ELK KR YRFIV+KIE + V+VEKLG P + Y+DF A+LP DE
Sbjct: 2   NAASGMAVDDECKLKFVELKAKRNYRFIVFKIESQDVVVEKLGSPEETYDDFAASLPPDE 181

Query: 63  CRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYASSKDR 107
           CRYAV+DF++ T  N  KS+IFFIAW+PD ++VR KM+YASSKDR
Sbjct: 182 CRYAVFDFDFTTNENCQKSKIFFIAWAPDIAKVRHKMVYASSKDR 316


>TC17526 similar to UP|ADF_VITVI (Q8SAG3) Actin-depolymerizing factor (ADF),
           partial (71%)
          Length = 433

 Score =  126 bits (316), Expect = 2e-30
 Identities = 56/103 (54%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
 Frame = +2

Query: 2   ANAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDK--QVIVEKLGEPGQGYEDFTANLP 59
           ANA+SGM V D  K  FMELK K+ +R++++K+++K  +V+VEK G P + Y+DF A+LP
Sbjct: 125 ANASSGMGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFAASLP 304

Query: 60  ADECRYAVYDFEYLTEGNVPKSRIFFIAWSPDTSRVRSKMIYA 102
            ++CRYA +DF+ +T  N  KS+IFFIAWSP TSR+R+KM+YA
Sbjct: 305 ENDCRYAAFDFDCVTSENCQKSKIFFIAWSPSTSRIRAKMLYA 433


>AV767290 
          Length = 484

 Score = 84.0 bits (206), Expect = 9e-18
 Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 7/110 (6%)
 Frame = -3

Query: 33  KIED--KQVIVEKLGEPGQG-----YEDFTANLPADECRYAVYDFEYLTEGNVPKSRIFF 85
           KI D   +V+V+ +    QG     ++DF   LP  +CRYAV DFE+  +  V KS+I  
Sbjct: 482 KINDDMSEVVVDGILPKSQGDHEGDWKDFVKMLPESDCRYAVVDFEWKDQPTVTKSKICL 303

Query: 86  IAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSR 135
           I WSP+ SRVRSKMIYA+S++    ++  +Q +LQAT+  E+   V KS+
Sbjct: 302 ILWSPEYSRVRSKMIYAASQEAVASKMADVQRQLQATELEELEYGVIKSQ 153


>TC18110 similar to UP|PPCK_ARATH (Q9T074) Phosphoenolpyruvate carboxykinase
           [ATP]  (PEP carboxykinase) (Phosphoenolpyruvate
           carboxylase) (PEPCK) , partial (13%)
          Length = 586

 Score = 25.4 bits (54), Expect = 3.6
 Identities = 15/46 (32%), Positives = 19/46 (40%)
 Frame = +1

Query: 3   NAASGMAVHDDCKLRFMELKTKRTYRFIVYKIEDKQVIVEKLGEPG 48
           N  S    H D  L+   L  K    F  YKI D Q + E++   G
Sbjct: 121 NTWSDKNAHKDALLKLASLFKKNFDVFTAYKIGDDQKLTEEIVAAG 258


>TC8265 similar to UP|Q8VZH3 (Q8VZH3) At2g13540/T10F5.8, partial (8%)
          Length = 1108

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 13/42 (30%), Positives = 20/42 (46%)
 Frame = +1

Query: 85  FIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTE 126
           F+      S V  + +   S+ R  REL  +Q++  A DP E
Sbjct: 181 FVLLYKSFSNVLKERLPKGSEARTLRELKSVQVDEMAVDPEE 306


>AV407490 
          Length = 403

 Score = 24.6 bits (52), Expect = 6.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 51  YEDFTANLPADECRYAVYDFEYLTEGNVPKSRIFFIAWS 89
           +++  +NLP        + F Y++ G +  SR F   WS
Sbjct: 204 FQNSGSNLPTSRGL*KCFCFVYVSIGTIASSRSFAFIWS 88


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,688,730
Number of Sequences: 28460
Number of extensions: 16816
Number of successful extensions: 76
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of query: 137
length of database: 4,897,600
effective HSP length: 81
effective length of query: 56
effective length of database: 2,592,340
effective search space: 145171040
effective search space used: 145171040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)