BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0066.5
(667 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP038017 150 6e-37
AV425218 144 3e-35
CN825057 127 4e-30
CB827002 109 1e-24
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp... 97 8e-21
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 62 2e-10
AV409041 59 3e-09
AV765466 55 3e-08
AV780484 46 2e-05
TC13836 45 4e-05
AV776853 44 8e-05
TC12220 37 0.008
AV766619 34 0.087
AV423237 33 0.19
AV407687 32 0.33
TC11511 29 2.8
AV770317 28 3.6
BP062078 28 3.6
AV777619 28 4.8
BP084112 28 6.2
>BP038017
Length = 570
Score = 150 bits (379), Expect = 6e-37
Identities = 67/147 (45%), Positives = 97/147 (65%)
Frame = +2
Query: 198 TFSEMSNKLNVKRGDTQAIYNFLCRMQLTNPNFFYLMDFDDEGHLRNAFWADARSRAACG 257
T+ + S K + R D Q + N+ +MQ NP F+Y + DDE + N FWADARSR+A
Sbjct: 128 TYVKSSQKRTLGR-DAQNLLNYFKKMQGKNPGFYYAIQLDDENRMINVFWADARSRSAYN 304
Query: 258 YFGDVIYFDNTYLSSKYEIPLVVFVGINHHGQSVLLGCGLLAGETTESYIWLFRTWVTCM 317
YFGD + FD Y ++Y++P F G+NHHGQ+VL GC LL E+ S+ WLFRTW++ M
Sbjct: 305 YFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTWLFRTWLSAM 484
Query: 318 SGCSPQTIITDRCEALQSAIIEVFPKS 344
+ P +I TD+ A+Q+A+ +VFP++
Sbjct: 485 NDRPPVSITTDQDRAIQAAVAQVFPET 565
>AV425218
Length = 419
Score = 144 bits (364), Expect = 3e-35
Identities = 68/137 (49%), Positives = 92/137 (66%)
Frame = +2
Query: 277 PLVVFVGINHHGQSVLLGCGLLAGETTESYIWLFRTWVTCMSGCSPQTIITDRCEALQSA 336
PL VG+NHHGQSVL GC LL+ E +ES++WLF++ + CMSG PQ IITD EA++ A
Sbjct: 5 PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKKA 184
Query: 337 IIEVFPKSHHCFGLSLIMKKVPEKLGGLHNYDGIRKALIKAVYETLKISEFEAAWGIMIQ 396
I V P + H + LS IMKK+P+KL G Y+ IR L VY+ + I EFE W +++
Sbjct: 185 IETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKIVE 364
Query: 397 RFGVSDHEWLRSLYEDR 413
FG+ D+EWL L+ +R
Sbjct: 365 DFGLEDNEWLNELFLER 415
>CN825057
Length = 721
Score = 127 bits (320), Expect = 4e-30
Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 8/243 (3%)
Frame = +1
Query: 58 AYNYYICYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRTKDVNHLRKET--RTG 115
AY++Y YAK +GF +KNS + ++E A CS G D R+ + +T
Sbjct: 1 AYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGGSNRRSSVKKTD 180
Query: 116 CPAMMRIRIAESQRWRIIEVILEHNHIL------GAKIHKSAKKMGNGTKRKSLPSSDSE 169
C A M ++ +W I E I EHNH L +IH++ K + + SE
Sbjct: 181 CKACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNM--DILHAVSE 354
Query: 170 VQTVKLYRPLVIDAGGNGNLNPSARDDRTFSEMSNKLNVKRGDTQAIYNFLCRMQLTNPN 229
+T K+Y + +GG N+ D + L + GD Q + + +Q NPN
Sbjct: 355 -RTRKMYVEMSRQSGGCLNIESLVGDLNDQFKKGQYLAMDEGDAQVMLEYFKHIQKENPN 531
Query: 230 FFYLMDFDDEGHLRNAFWADARSRAACGYFGDVIYFDNTYLSSKYEIPLVVFVGINHHGQ 289
FFY +D ++E LRN FW DA+S F DV+ FD +Y+ S ++P FVG+NHH Q
Sbjct: 532 FFYSIDLNEEQRLRNIFWIDAKSINDYLSFNDVVSFDTSYIKSNEKLPFAPFVGVNHHCQ 711
Query: 290 SVL 292
+L
Sbjct: 712 PIL 720
>CB827002
Length = 534
Score = 109 bits (273), Expect = 1e-24
Identities = 65/175 (37%), Positives = 98/175 (55%)
Frame = +1
Query: 402 DHEWLRSLYEDRVRWAPVFLKDVFFGGMSAARPGESIGPFFGRYVHKQTPLKEFLDKYEL 461
DHEWL SLY + APV L+D FF MS + +S+ +F YV+ T L +F YE
Sbjct: 31 DHEWL-SLYSSCRQGAPVHLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYEK 207
Query: 462 ALHKKHKEESLADTESRNSSPVLKTRCSLELQLSRMYTREIFMKFQFEVEEMFSCFGTTQ 521
AL ++++E AD ++ N+ PVL+T +E Q S +YTR+IFM+FQ E+ + F ++
Sbjct: 208 ALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLT-FMASK 384
Query: 522 LHVDGPIVIYLVKERVLIDGNRREIKDFEVVYSRAAGELRCICSCFNFYGYLCRH 576
DG ++ Y V + + ++ F V+ +A+ C C F F G LCRH
Sbjct: 385 ADDDGEVITYHVAK--FGEDHKAYYVKFNVLEMKAS----CSCQMFEFSGLLCRH 531
>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
{Oryza sativa (japonica cultivar-group);}, partial (8%)
Length = 488
Score = 97.1 bits (240), Expect = 8e-21
Identities = 46/117 (39%), Positives = 65/117 (55%)
Frame = +1
Query: 198 TFSEMSNKLNVKRGDTQAIYNFLCRMQLTNPNFFYLMDFDDEGHLRNAFWADARSRAACG 257
T SE + ++ G+ I + R + N F++ DDE + N FW DAR G
Sbjct: 1 TISEKRRQRSLLHGEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYG 180
Query: 258 YFGDVIYFDNTYLSSKYEIPLVVFVGINHHGQSVLLGCGLLAGETTESYIWLFRTWV 314
YFGD++ D+TY + PL VF G NHH ++V+ G LL ETTESY WLF +++
Sbjct: 181 YFGDMVSLDSTYCTHSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFESFL 351
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 62.4 bits (150), Expect = 2e-10
Identities = 35/101 (34%), Positives = 49/101 (47%)
Frame = +2
Query: 184 GGNGNLNPSARDDRTFSEMSNKLNVKRGDTQAIYNFLCRMQLTNPNFFYLMDFDDEGHLR 243
GG+ +L + D + ++ GD A ++L +P FFY + L
Sbjct: 65 GGHESLGFTKTDLSNHIAKPKRERIQNGDAAAALSYLEGKADNDPMFFYKFTKTGDESLE 244
Query: 244 NAFWADARSRAACGYFGDVIYFDNTYLSSKYEIPLVVFVGI 284
N FW D SR FGDVI FD+TY +KY PLVVF+ +
Sbjct: 245 NLFWCDGVSRMDYNVFGDVIAFDSTYKKNKYNKPLVVFLHV 367
>AV409041
Length = 349
Score = 58.9 bits (141), Expect = 3e-09
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Frame = +3
Query: 46 PAVGMEFESYDDAYNYYICYAKEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFK-RTKD 104
P +EFES++ AY +Y YAK GF +S R S+E A C G K ++ D
Sbjct: 33 PHYDIEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDD 212
Query: 105 VNHLRKETRTGCPAMMRIRIAESQRWRIIEVILEHNH-ILGAKIH 148
+ R + GC A M ++ + +W + + EHNH +L A+ H
Sbjct: 213 AINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAH 347
>AV765466
Length = 599
Score = 55.5 bits (132), Expect = 3e-08
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = -2
Query: 560 LRCICSCFNFYGYLCRHALCVLNFNGVEEIPFKYILSRWKKDYKRLHV 607
++C C F F G LCRH+L +L+ V+E+P +Y+L RW+K+ +R +V
Sbjct: 598 VKCDCRLFEFRGILCRHSLAILSQERVKEVPDRYVLDRWRKNMRRKYV 455
>AV780484
Length = 529
Score = 46.2 bits (108), Expect = 2e-05
Identities = 22/64 (34%), Positives = 32/64 (49%)
Frame = -1
Query: 214 QAIYNFLCRMQLTNPNFFYLMDFDDEGHLRNAFWADARSRAACGYFGDVIYFDNTYLSSK 273
+A+ + Q NPNFFY +D D HL + FW D + R ++ YL +K
Sbjct: 205 KAMTEYFVSTQGENPNFFYAIDLDLNRHLTSVFWVDIKGRLDYETSMMLVLIHTHYLKNK 26
Query: 274 YEIP 277
Y+IP
Sbjct: 25 YKIP 14
>TC13836
Length = 328
Score = 45.1 bits (105), Expect = 4e-05
Identities = 28/55 (50%), Positives = 35/55 (62%), Gaps = 2/55 (3%)
Frame = +1
Query: 611 SSVSADDTDPIQWSNQLFS-SALQVVEEGTISLDHYNV-ALQACEESLSKVHDVD 663
SSVSADDTDPI + ++EEGTISLDHY+ A + + +KVHDVD
Sbjct: 1 SSVSADDTDPIHMV*SVI**CPTTLLEEGTISLDHYHASAARPVKNH*AKVHDVD 165
>AV776853
Length = 625
Score = 43.9 bits (102), Expect = 8e-05
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Frame = +1
Query: 50 MEFESYDDAYNYYICYAKEVGFCVRVKNSWFKRNSREKYGAV----LCCSSQGFKRTKDV 105
++F S ++AY +Y YAK GF VR + R+ +G V C+ QG + K
Sbjct: 238 LDFGSEEEAYQFYQAYAKYQGFIVRKDDI-----GRDYHGNVNMRQFVCNRQGLRSKKHY 402
Query: 106 NHLRKE------TRTGCPAMMRIRI-AESQRWRIIEVILEHNHIL 143
N ++ T T C A +R+ + + +W+++ HNH L
Sbjct: 403 NRTDRKRDHKPVTHTNCLAKLRVHLDYKIGKWKVVSFEECHNHEL 537
>TC12220
Length = 473
Score = 37.4 bits (85), Expect = 0.008
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 569 FYGYLCRHALCVLNFNGVEEIPFKYILSRWKKDYKRLHVPDHSSV 613
+ G LCRH L V + E+P +YIL RW ++ + PD SV
Sbjct: 4 YEGVLCRHPLRVFXILELREVPSRYILHRWTRNAEDGVFPDIESV 138
>AV766619
Length = 412
Score = 33.9 bits (76), Expect = 0.087
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Frame = +2
Query: 317 MSGCSPQTIITDRCEALQSAIIEVFPKSHHCFGLSLIMKKVPEKLGGLHNYDGIRKALIK 376
+S P T + + L+ ++ E+F K HH + L + +K+ + L G +++ R+ +I
Sbjct: 2 ISTSEPITFVANCQNGLKKSLSEIFEKCHHSYCLRYLAEKLNKDLKGQFSHEA-RRFMIN 178
Query: 377 AVYETLKISEFEAAWGIMIQRFGVSDHEWLRSLYEDRVRWAPVFLKDVFFGGMSAARPGE 436
Y + E + G+S + + + WA + FF G
Sbjct: 179 DFYAAAYAPKQETFERSVENMKGISSEAFNWVMQNEPEHWA-----NAFFNGARYNHLTS 343
Query: 437 SIGPFFGRYVHK--QTPLKEFLD 457
+ G F ++ + + P+ + +D
Sbjct: 344 NFGQQFYNWMSEAHELPITQMID 412
>AV423237
Length = 310
Score = 32.7 bits (73), Expect = 0.19
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +2
Query: 248 ADARSRAACGYFGDVIYFDNTYLSSKYEIPLVVFVGINHHGQSVLLGCGLLAGETTESYI 307
ADA SR YFGD + FD T + + G + V+ L+A E+ S++
Sbjct: 14 ADATSRMNYSYFGDAVIFDTTI--DNHIESICSSWG*SSWATCVIWLVALIANESESSFV 187
Query: 308 WL 309
WL
Sbjct: 188 WL 193
>AV407687
Length = 419
Score = 32.0 bits (71), Expect = 0.33
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 281 FVGINHHGQSVLLGCGLLAGETTE 304
F+GIN++GQ V+ G GL GE E
Sbjct: 267 FIGINYYGQEVVCGSGLKLGENDE 338
>TC11511
Length = 646
Score = 28.9 bits (63), Expect = 2.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 184 GGNGNLNPSARDDRTFSEMSNKLNVKRGDTQAIYNFLC 221
GG N ARD ++ E +L KRG + +Y ++C
Sbjct: 210 GGGMRANREARD*ASYEEE*ERLEWKRGRCECVYIYVC 97
>AV770317
Length = 163
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 10/34 (29%)
Frame = -3
Query: 560 LRCICSCFNFYGY-----LC-----RHALCVLNF 583
LRC+CS F+ +GY LC HALC L +
Sbjct: 137 LRCVCSVFSSHGYKS*DLLCSIVNYSHALCYLYY 36
>BP062078
Length = 419
Score = 28.5 bits (62), Expect = 3.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 205 KLNVKRGDTQAIYNFLCRMQLTNPN 229
K +++G TQ I NFL ++Q NPN
Sbjct: 44 KGKLRKGQTQKILNFLSQIQRENPN 118
>AV777619
Length = 433
Score = 28.1 bits (61), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 70 GFCVRVKNSWFKRNSREKYGAVLCC 94
G + V +W+ RNS + Y AV CC
Sbjct: 229 GLNIVVPTTWYMRNSSK*YFAVFCC 303
>BP084112
Length = 373
Score = 27.7 bits (60), Expect = 6.2
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 446 VHKQTPLKEFLDKYELALHKKHKEESLADTESRNSSPVLKTRCSLELQLSRMYTREIFMK 505
+H+ L + L K LA+H+ SL + + P R S ++ Y F+
Sbjct: 43 IHRVKVLHQILTKKSLAIHRHGS*TSLQEK*DGSDDPCRLRRSSSSME---AYPSSKFLP 213
Query: 506 FQFEVE 511
F F VE
Sbjct: 214 FMFSVE 231
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,780,965
Number of Sequences: 28460
Number of extensions: 188606
Number of successful extensions: 958
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of query: 667
length of database: 4,897,600
effective HSP length: 96
effective length of query: 571
effective length of database: 2,165,440
effective search space: 1236466240
effective search space used: 1236466240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0066.5