TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0066.1
         (332 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CN825099                                                              355  6e-99
BP052913                                                               95  1e-20
TC9836 weakly similar to UP|Q9LXV0 (Q9LXV0) Glucosyltransferase-...    29  1.3
TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%)                    28  2.8
TC8278 weakly similar to UP|Q9FZ09 (Q9FZ09) Patatin-like protein...    28  2.8
BP036115                                                               27  4.8
TC9146 homologue to UP|Q9LIC2 (Q9LIC2) Multispanning membrane pr...    27  4.8
BP062486                                                               27  6.2

>CN825099 
          Length = 595

 Score =  355 bits (911), Expect = 6e-99
 Identities = 182/183 (99%), Positives = 182/183 (99%)
 Frame = +3

Query: 1   VPVRVAGGLLFELLGQSAGDPLVEEDDIPIVLRSWQAQNFLVTVMHIKGSVSRINVLGIA 60
           VPVRVAGGLLFELLGQSAGDPLVEEDDIPIVLRSWQAQNFLVTVMHIKGSVSRINVLGIA
Sbjct: 45  VPVRVAGGLLFELLGQSAGDPLVEEDDIPIVLRSWQAQNFLVTVMHIKGSVSRINVLGIA 224

Query: 61  EVQELLSGGGYNVPRTVHEVIAQLACRLSRWDDRLFRKSIFGVADEIELKFMNRRNYEDL 120
           EVQELLSGGGYNVPRTVHEVIAQLACRLSRWDDRLFRKSIFGVADEIELKFMNRRNYEDL
Sbjct: 225 EVQELLSGGGYNVPRTVHEVIAQLACRLSRWDDRLFRKSIFGVADEIELKFMNRRNYEDL 404

Query: 121 NLFVIILNQEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGARSLLEGIRKSTREMIE 180
           NLFVIILNQEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGARSLL GIRKSTREMIE
Sbjct: 405 NLFVIILNQEIRKLSTQVIRVKWSLHAREEIVFELLQHLKGIGARSLLXGIRKSTREMIE 584

Query: 181 EQE 183
           EQE
Sbjct: 585 EQE 593


>BP052913 
          Length = 462

 Score = 95.1 bits (235), Expect = 1e-20
 Identities = 53/90 (58%), Positives = 62/90 (68%)
 Frame = -1

Query: 223 MVLTIITGLFGINVDGIPGAEHTPYAFGLFTAILVFIGAVLVVVGLVYLGLKKPIAEEKV 282
           +VL+IITGLFGINVDGIPG    P AF LF+ IL  + +      +     +K I EE V
Sbjct: 462 LVLSIITGLFGINVDGIPGESEAPNAFALFSVILC-VRSSANWNWITLSWAEKTIMEENV 286

Query: 283 EVRKLELQELVKMFQHEAETHAQVRKNVSR 312
             RKLELQELV+MFQHEAETHAQVRK  S+
Sbjct: 285 AERKLELQELVRMFQHEAETHAQVRKTASK 196


>TC9836 weakly similar to UP|Q9LXV0 (Q9LXV0) Glucosyltransferase-like
           protein, partial (55%)
          Length = 1286

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 280 EKVEVRKLELQELVKMFQHEAETHAQVRKNVSRNNLPPTAGDAFRRDVDY 329
           ++ EVR  +L E +++  +EAE+  ++RKN    N+     DA R +  Y
Sbjct: 817 KRCEVRHEDLVEKIELVMNEAESGVKIRKNA--GNIREMIRDAVRDEDGY 960


>TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%)
          Length = 527

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 17/42 (40%), Positives = 22/42 (51%)
 Frame = -1

Query: 158 HLKGIGARSLLEGIRKSTREMIEEQEAVRGRLFTIQDVTQST 199
           HLKG G  S  EG+ K      + +  + GRLF    V+QST
Sbjct: 200 HLKGDGLSS--EGLDKDLHTTTKTEHQMEGRLFLNVVVSQST 81


>TC8278 weakly similar to UP|Q9FZ09 (Q9FZ09) Patatin-like protein 1,
           partial (39%)
          Length = 777

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 17/46 (36%), Positives = 25/46 (53%)
 Frame = +2

Query: 93  DRLFRKSIFGVADEIELKFMNRRNYEDLNLFVIILNQEIRKLSTQV 138
           D L  K+   V   + L FMN RN+  L L  I+L   I+++ST +
Sbjct: 497 DPLTPKAFCIVM*NVHLLFMNCRNFSYLLLRNIVLCNSIKRMSTSL 634


>BP036115 
          Length = 391

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 14/39 (35%), Positives = 22/39 (55%)
 Frame = -2

Query: 256 LVFIGAVLVVVGLVYLGLKKPIAEEKVEVRKLELQELVK 294
           + FIG  ++  G+VYLG+K  +  +K E  K E +   K
Sbjct: 366 VAFIGLSVITFGVVYLGVKDFL--QKKETEKFEKEAAAK 256


>TC9146 homologue to UP|Q9LIC2 (Q9LIC2) Multispanning membrane
           protein-like, partial (31%)
          Length = 980

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 249 FGLFTAILVF---IGAVLVVVGLVYLGLKKPIAEEKVEVRKLELQ 290
           FG   A++     I   LV VG  YLG KKP  E+ V+  K+  Q
Sbjct: 2   FGTMFALVCLWFGISVPLVFVGS-YLGFKKPAIEDPVKTNKIPRQ 133


>BP062486 
          Length = 561

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (55%), Gaps = 2/32 (6%)
 Frame = -2

Query: 74  PRTVHEVIAQLACRLSRWDDRLF--RKSIFGV 103
           P  +  ++  + C L  W DRLF  R+S+ GV
Sbjct: 137 PYLIT*IVLNVTCCLQHWSDRLFFNRRSLCGV 42


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.141    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,827,701
Number of Sequences: 28460
Number of extensions: 55126
Number of successful extensions: 226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of query: 332
length of database: 4,897,600
effective HSP length: 91
effective length of query: 241
effective length of database: 2,307,740
effective search space: 556165340
effective search space used: 556165340
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)