BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0065.6
(516 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP039231 330 3e-91
AV428808 224 3e-66
TC10770 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro... 195 1e-50
AV410246 111 3e-25
TC14361 similar to PIR|T01729|T01729 mitochondrial solute carrie... 30 0.73
TC12719 homologue to UP|ZFP1_ARATH (Q42485) Zinc finger protein ... 30 0.95
BP055095 29 2.1
TC18481 similar to UP|O23166 (O23166) Thiol-disulfide interchang... 28 2.8
TC8158 similar to UP|Q9SGW3 (Q9SGW3) F1N19.9 (AT1G64520/F1N19_10... 28 2.8
TC12051 28 2.8
AV410532 28 3.6
TC11553 weakly similar to UP|BAD10712 (BAD10712) Proline-rich pr... 28 3.6
AV773578 28 4.7
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 28 4.7
CB829198 28 4.7
BP028664 27 8.0
TC9039 27 8.0
>BP039231
Length = 567
Score = 330 bits (846), Expect = 3e-91
Identities = 159/159 (100%), Positives = 159/159 (100%)
Frame = +1
Query: 3 GSSEEAGMFTVHRTVGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPE 62
GSSEEAGMFTVHRTVGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPE
Sbjct: 91 GSSEEAGMFTVHRTVGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPE 270
Query: 63 CESYLQPPRTWIKLQLESKELLTFCLKKLQKNMSSSKVRMVHAEFIWTEPHSKRIKVNVK 122
CESYLQPPRTWIKLQLESKELLTFCLKKLQKNMSSSKVRMVHAEFIWTEPHSKRIKVNVK
Sbjct: 271 CESYLQPPRTWIKLQLESKELLTFCLKKLQKNMSSSKVRMVHAEFIWTEPHSKRIKVNVK 450
Query: 123 VQKEVLNGAILEQSYLVEYVQQEHLCESCSKVAANPDQW 161
VQKEVLNGAILEQSYLVEYVQQEHLCESCSKVAANPDQW
Sbjct: 451 VQKEVLNGAILEQSYLVEYVQQEHLCESCSKVAANPDQW 567
>AV428808
Length = 411
Score = 224 bits (570), Expect(2) = 3e-66
Identities = 111/112 (99%), Positives = 111/112 (99%)
Frame = +1
Query: 226 IKSRSDKQLVSHDTKSNEYNYKHTFSVEISPICREDLICLPPKVALSLGNLGPIVICTKV 285
IKSR DKQLVSHDTKSNEYNYKHTFSVEISPICREDLICLPPKVALSLGNLGPIVICTKV
Sbjct: 4 IKSRRDKQLVSHDTKSNEYNYKHTFSVEISPICREDLICLPPKVALSLGNLGPIVICTKV 183
Query: 286 TNSIALLDPFTLRYCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVT 337
TNSIALLDPFTLRYCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVT
Sbjct: 184 TNSIALLDPFTLRYCFLDADQYWRSSFKSLLTSRQLVEYIVLDVEVVSSEVT 339
Score = 45.4 bits (106), Expect(2) = 3e-66
Identities = 21/22 (95%), Positives = 21/22 (95%)
Frame = +2
Query: 339 GGTKYVLADAQVARVSDFGKND 360
GGTKYVLADAQ ARVSDFGKND
Sbjct: 344 GGTKYVLADAQEARVSDFGKND 409
>TC10770 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM) (NY-REN-43
antigen), partial (4%)
Length = 481
Score = 195 bits (496), Expect = 1e-50
Identities = 96/96 (100%), Positives = 96/96 (100%)
Frame = +2
Query: 421 GKARSWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRFNISLYRNKEYQPSE 480
GKARSWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRFNISLYRNKEYQPSE
Sbjct: 2 GKARSWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRFNISLYRNKEYQPSE 181
Query: 481 IASVTDGEELPSVPLEELLADLELGEDEDEEDDMME 516
IASVTDGEELPSVPLEELLADLELGEDEDEEDDMME
Sbjct: 182 IASVTDGEELPSVPLEELLADLELGEDEDEEDDMME 289
>AV410246
Length = 426
Score = 111 bits (277), Expect = 3e-25
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +3
Query: 457 DLEENPDLRFNISLYRNKEYQPSEIASVTDGEELPSVPLEELLADLELGEDEDEEDDMME 516
DLEENPDLRFN+SLY+N E+QPSE+ASVTDGEELPSVPLEELLADLELGEDEDEED MME
Sbjct: 6 DLEENPDLRFNLSLYQNIEFQPSEMASVTDGEELPSVPLEELLADLELGEDEDEEDFMME 185
>TC14361 similar to PIR|T01729|T01729 mitochondrial solute carrier protein
homolog - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (20%)
Length = 591
Score = 30.4 bits (67), Expect = 0.73
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 39 KCLRSEVDITEGLLKRLVLVHCPECESYLQPPRTWIKLQLES 80
+ +R+EVDIT L+ L+ CP LQ P W+ L+S
Sbjct: 243 QAIRTEVDITFSLIF*SPLLKCPSPSHMLQTPVLWMGPPLQS 118
>TC12719 homologue to UP|ZFP1_ARATH (Q42485) Zinc finger protein 1, partial
(18%)
Length = 548
Score = 30.0 bits (66), Expect = 0.95
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 246 YKHTFSVEISPICREDLICLPPKVAL 271
YKH+ + P+C L+ LPP++AL
Sbjct: 260 YKHSDPINFPPLCPSLLLLLPPQIAL 183
>BP055095
Length = 538
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Frame = +1
Query: 52 LKRLVLVHCPECESYLQPPRTWIKLQLESKELLTFCLK----KLQKNMSSSKVRMV 103
+K VH C S+L TW+ L+ KELLTF K K + N+ K+ ++
Sbjct: 334 VKLYTKVHERTC*SFLS---TWVSSVLKEKELLTFYKK*HPRKTRNNIGLEKMSLI 492
>TC18481 similar to UP|O23166 (O23166) Thiol-disulfide interchange like
protein (Thioredoxin-like protein)
(AT4g37200/C7A10_160), partial (42%)
Length = 602
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = -3
Query: 24 KCGIPMQPNAANMCVKCLRSEVDITE 49
KCGIP PN+++ C + + S +IT+
Sbjct: 141 KCGIPSTPNSSSSCSQFVLSTFNITK 64
>TC8158 similar to UP|Q9SGW3 (Q9SGW3) F1N19.9 (AT1G64520/F1N19_10),
complete
Length = 1331
Score = 28.5 bits (62), Expect = 2.8
Identities = 28/94 (29%), Positives = 37/94 (38%)
Frame = -2
Query: 170 HVSHRRTFFYLEQLILKHGAAASAIRIKQMDEGIDFYFSNRSHGVKFVEFIGKVAPIKSR 229
+ SHR F Q IL A ++ + EGI HG F K P
Sbjct: 925 NTSHRIPF----QTILSSSLA*LSVWLMSWSEGISL------HGADSFAF*KKTEPF--- 785
Query: 230 SDKQLVSHDTKSNEYNYKHTFSVEISPICREDLI 263
L+SH S+ K ++S E + ICR LI
Sbjct: 784 ----LISHSGCSSLIYSKSSWSEEYNKICRASLI 695
>TC12051
Length = 629
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 466 FNISLYRNKEYQPSEIASVTDGEELPSVPLEELLADLELGEDED 509
F + + KE + SEIAS++ E+ S EE A+ + +DE+
Sbjct: 9 FTVWISEEKERENSEIASMSGKEDYDSDAPEEFTAEQGIQQDEE 140
>AV410532
Length = 418
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/67 (28%), Positives = 31/67 (45%)
Frame = +1
Query: 444 PDKMHSEYEQFLKDLEENPDLRFNISLYRNKEYQPSEIASVTDGEELPSVPLEELLADLE 503
P K L ++E PD ++ NK + ++ TDG +LP P ++ D +
Sbjct: 229 PKKEKISVSAMLASMDEKPDKAKKVASSSNKPKPKPKASTYTDGIDLP--PSDD--DDDD 396
Query: 504 LGEDEDE 510
L EDE +
Sbjct: 397 LSEDESK 417
>TC11553 weakly similar to UP|BAD10712 (BAD10712) Proline-rich protein
family-like, partial (27%)
Length = 493
Score = 28.1 bits (61), Expect = 3.6
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Frame = -1
Query: 410 KSYEEKRQK-KRGKARSWKLKSLNMEVDDKVARADPDKMHSEYEQFLKDLEENPDLRFNI 468
++Y+EK KRG RS + + + + V AR D H + L+ + LR
Sbjct: 391 RAYQEKWYSLKRGPLRSNQWEEVAVVV---AARCGYDFAHPS-KSALQCRHKIDKLR--- 233
Query: 469 SLYRNKEYQPS----EIASVTDGEELPSVPLE-ELLADLELGEDEDEEDDMME 516
+R ++++P+ + S+ D E +P+ LA L G DEDEEDD +E
Sbjct: 232 QRHRAEKHRPATRPWQYFSLMDDLERGPLPISAHPLASLPPGVDEDEEDDEIE 74
>AV773578
Length = 561
Score = 27.7 bits (60), Expect = 4.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 257 ICREDLICLPPKVALSLG 274
+CR L C PP +ALSLG
Sbjct: 211 VCRSQLHCQPPLLALSLG 158
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 27.7 bits (60), Expect = 4.7
Identities = 19/42 (45%), Positives = 24/42 (56%), Gaps = 2/42 (4%)
Frame = -2
Query: 477 QPSEIASVTDGEELPSVPLEELLADL--ELGEDEDEEDDMME 516
QPSE VT+GEE + EE D E GE E+EE++ E
Sbjct: 771 QPSEKKGVTEGEE*KELGGEEQGRDEFDEDGEGEEEEEEEEE 646
>CB829198
Length = 562
Score = 27.7 bits (60), Expect = 4.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 464 LRFNISLYRNKEYQPSEIASVTDGEELPSVPLEELLADLELGEDEDEEDD 513
+R + L+ E+QP E D EE + +EE E E+EED+
Sbjct: 183 IREQVDLFLQTEHQPQEEEQHDDQEEPQNDDVEESQHSDSKEETEEEEDE 332
>BP028664
Length = 521
Score = 26.9 bits (58), Expect = 8.0
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Frame = -1
Query: 264 CLPPKVALSLGNLGPIVICT--KVTNSIALLDP---FTLRYCFLDADQYWRSSFKSL 315
C PP + + L N I IC K I LL CF +WRS + SL
Sbjct: 209 CTPPSINIVLANHAEIKICKIPKKRCWITLLQS*KEMLTWICFCCCRSFWRSKYGSL 39
>TC9039
Length = 1218
Score = 26.9 bits (58), Expect = 8.0
Identities = 22/93 (23%), Positives = 42/93 (44%)
Frame = +2
Query: 34 ANMCVKCLRSEVDITEGLLKRLVLVHCPECESYLQPPRTWIKLQLESKELLTFCLKKLQK 93
+N+ K ++++++ LL LVL+ P S + K + EL++FC +Q+
Sbjct: 530 SNIASKLKALKLELSDDLLIHLVLLSLPAQFSQFKISYNCPKEKWSLNELISFC---VQE 700
Query: 94 NMSSSKVRMVHAEFIWTEPHSKRIKVNVKVQKE 126
+ R A F+ T + K V+ + E
Sbjct: 701 EERLKQERKESAHFVSTSKDKGKRKKTVEPKNE 799
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,035,562
Number of Sequences: 28460
Number of extensions: 127332
Number of successful extensions: 679
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of query: 516
length of database: 4,897,600
effective HSP length: 94
effective length of query: 422
effective length of database: 2,222,360
effective search space: 937835920
effective search space used: 937835920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0065.6