TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0065.1
         (378 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CN825055                                                              401  e-112
CB827385                                                               76  1e-14
TC15786 similar to UP|Q94II1 (Q94II1) ERD7 protein (Fragment), p...    67  6e-12
TC12921                                                                64  5e-11
TC12361 similar to UP|Q94II1 (Q94II1) ERD7 protein (Fragment), p...    54  3e-08
BP050838                                                               29  1.5
CB827277                                                               26  9.5

>CN825055 
          Length = 593

 Score =  401 bits (1030), Expect = e-112
 Identities = 196/197 (99%), Positives = 196/197 (99%)
 Frame = +2

Query: 16  MRTSTLVPIAEYSKPKNLIRQEVLIQIPGCRVYLMDEGQAVELAQGQFMIIKVMDDNVSL 75
           MRTSTLVPIAEYSKPKNLIRQEVLIQIPGCRVYLMDEGQAVELAQGQFMIIKVMDDNVSL
Sbjct: 2   MRTSTLVPIAEYSKPKNLIRQEVLIQIPGCRVYLMDEGQAVELAQGQFMIIKVMDDNVSL 181

Query: 76  ATIIKVGNGVQWPLTKDEPVVKVDTLHYLFTLPVKDGGSEPLSYGVTFPEQCYGSMGLLE 135
           ATIIKVGNGVQWPLTKDEPVVKVDTLHYLFTLPVKDGGSEPLSYGVTFPEQCYGSMGLLE
Sbjct: 182 ATIIKVGNGVQWPLTKDEPVVKVDTLHYLFTLPVKDGGSEPLSYGVTFPEQCYGSMGLLE 361

Query: 136 SFLKDHSCFSDLKTGKKGGLDWEQFAPRVEDYNHFLAKAIAGGTGQIVKGIFMCSNAYTN 195
           SFLKDHSCFSDLKTGKKGGLDWE FAPRVEDYNHFLAKAIAGGTGQIVKGIFMCSNAYTN
Sbjct: 362 SFLKDHSCFSDLKTGKKGGLDWEXFAPRVEDYNHFLAKAIAGGTGQIVKGIFMCSNAYTN 541

Query: 196 QVQSGGQTILTDNKNNG 212
           QVQSGGQTILTDNKNNG
Sbjct: 542 QVQSGGQTILTDNKNNG 592


>CB827385 
          Length = 529

 Score = 75.9 bits (185), Expect = 1e-14
 Identities = 43/111 (38%), Positives = 66/111 (58%), Gaps = 2/111 (1%)
 Frame = +2

Query: 36  QEVLIQIPGCRVYLMDEGQAVELAQGQFMIIKVMDDNVSLATIIKVGNGVQWPLTKDEPV 95
           + VL+ +PG  ++L+++  +V LA G   II +M+ +  +  +  VG+ VQWPL KD   
Sbjct: 173 EHVLVTVPGVILHLIEKDSSVHLASGDLNIISLMEGDRVVTVLASVGDQVQWPLAKDVSA 352

Query: 96  VKVDTLHYLFTLPV-KDGGS-EPLSYGVTFPEQCYGSMGLLESFLKDHSCF 144
           VK+D  HY FT+ V K+GG  E L+YGVT   +  G    L+  L+ + CF
Sbjct: 353 VKLDDSHYFFTIRVPKEGGEFEVLNYGVTVAAEGRGRGKELDEVLEKY-CF 502


>TC15786 similar to UP|Q94II1 (Q94II1) ERD7 protein (Fragment), partial
           (17%)
          Length = 600

 Score = 66.6 bits (161), Expect = 6e-12
 Identities = 33/64 (51%), Positives = 40/64 (61%)
 Frame = +2

Query: 294 NKVFEATEAAQKQSLSATSQAATRMVSNRYGEEAGEATEHVFATAGHAANTAWNVSKIRK 353
           +KV +A E A K  +S +S   T +V +RYGE+A EAT      AGHA  TAW   KIRK
Sbjct: 5   SKVCDAVEVAGKNVMSTSSTVTTELVDHRYGEQAAEATSEGLNAAGHALGTAWAAFKIRK 184

Query: 354 AINP 357
           AINP
Sbjct: 185 AINP 196


>TC12921 
          Length = 399

 Score = 63.5 bits (153), Expect = 5e-11
 Identities = 27/70 (38%), Positives = 45/70 (63%)
 Frame = +3

Query: 36  QEVLIQIPGCRVYLMDEGQAVELAQGQFMIIKVMDDNVSLATIIKVGNGVQWPLTKDEPV 95
           +E+L++IPG  + L+D+  +VELA G   + ++   + ++A   +V + +QWPL KDE  
Sbjct: 189 EEILLKIPGAILNLIDKDYSVELASGDLTVTRLRQGDNTIAVYARVADEIQWPLAKDETA 368

Query: 96  VKVDTLHYLF 105
           VK+D  HY F
Sbjct: 369 VKLDDSHYFF 398


>TC12361 similar to UP|Q94II1 (Q94II1) ERD7 protein (Fragment), partial
           (15%)
          Length = 412

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +3

Query: 318 MVSNRYGEEAGEATEHVFATAGHAANTAWNVSKIRKAINP---VTPASTAGGALRNS 371
           +VS++YGEEA + T      AGHA  TAW V K+RKA+NP   + P + A  A R S
Sbjct: 57  LVSHKYGEEAAQVTNEGLDAAGHAIGTAWTVFKLRKALNPKSVIXPTTLAKAAARAS 227


>BP050838 
          Length = 474

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 16  MRTSTLVPIAEYSKPKNLIRQEVLIQIPGC 45
           +R++TL+P+     P + + Q++LIQ P C
Sbjct: 380 LRSATLIPLQPPPTPLSSLHQQMLIQTPPC 469


>CB827277 
          Length = 546

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +2

Query: 113 GSEPLSYGVTFPEQCYGSMGLLESFLKDHSCFSDLKTGKKGGLDWEQFAPRVEDYNHFLA 172
           G+ P S  +   +QC+  +   ESF    + F+       GG+   Q  P +  YNHF  
Sbjct: 53  GTAPASRPMGNWQQCHSGV---ESFYGPPTGFTGPFIAPPGGIPGVQGPPHMVVYNHF-- 217

Query: 173 KAIAGGTGQI 182
            A  G  GQ+
Sbjct: 218 -APVGQFGQV 244


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,076,512
Number of Sequences: 28460
Number of extensions: 56081
Number of successful extensions: 184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of query: 378
length of database: 4,897,600
effective HSP length: 92
effective length of query: 286
effective length of database: 2,279,280
effective search space: 651874080
effective search space used: 651874080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)