BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0064b.8
(192 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 39 8e-04
TC8106 weakly similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cu... 37 0.003
TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate... 36 0.005
BP039702 35 0.006
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 35 0.006
TC7995 similar to PIR|S63686|S63686 sterol 24-C-methyltransferas... 35 0.011
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 35 0.011
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 34 0.019
TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich ... 34 0.019
AW720177 33 0.024
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%) 33 0.024
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti... 33 0.032
TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization s... 33 0.041
BP044109 32 0.054
TC19884 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger... 32 0.054
TC16643 similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine protein k... 32 0.054
BP072816 32 0.071
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 32 0.092
TC20065 similar to UP|AAR20725 (AAR20725) At5g18690, partial (21%) 31 0.12
BP058233 31 0.12
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 38.5 bits (88), Expect = 8e-04
Identities = 30/109 (27%), Positives = 48/109 (43%), Gaps = 7/109 (6%)
Frame = +1
Query: 26 ASSRRGDHGAATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLS 85
++S +++ SS P+++ SSP SS+ ++S S+ SS ++ P
Sbjct: 271 SASSSSSSSSSSSLSSSSTPSSSSSSPPSSSSSSSSSSSSSSSWSSPSSSSSSSPFSSGP 450
Query: 86 DPVPTPPSP-------MVELSPYAIPQQPSSEETSGEESSSDHEREGSS 127
P P PPS + EL PY PSS++ S S + SS
Sbjct: 451 APAPGPPSGAFFELLLLFELLPY---PAPSSDDKSSSPSPNGPSPSSSS 588
>TC8106 weakly similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber
hypocotyls (Arabinogalactan protein), partial (32%)
Length = 760
Score = 36.6 bits (83), Expect = 0.003
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Frame = +1
Query: 35 AATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSP 94
AA A + APA+T + + SS P A VP A+ PV S P P P +P
Sbjct: 61 AAAPAPVAKAPASTPPAAVPVSSPPPAPVPV---------ASPPAPVPVSSPPAPAPTTP 213
Query: 95 MVELSPYAIPQQPSSEETSGEESSSDHEREGSSEEEHILEEELDADVVPEGAHGGDDDLI 154
++P A + P+ + ++ ++ G+ + L P GA G DD L
Sbjct: 214 APAVTPTA--EVPAPAPSKSKKKVKKGKKHGAPAPSPL----LGPPAPPVGAPGPDDALS 375
Query: 155 ---QRVAPFPGGLMTCRFSRIML 174
VA G T R+ ++++
Sbjct: 376 PGPTAVAADESGAETIRYLKMVV 444
>TC8682 similar to UP|HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate
dioxygenase (4HPPD) (HPD) (HPPDase) , partial (29%)
Length = 576
Score = 35.8 bits (81), Expect = 0.005
Identities = 30/93 (32%), Positives = 40/93 (42%)
Frame = +1
Query: 25 HASSRRGDHGAATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDL 84
HA+S G + ++S P T++ P SSAPA S S+ + + P L
Sbjct: 295 HAASP-GASACRSSQNQTSPPETTLTPPT--SSAPATSASSSPPHTLPKSPSPPPPPSPL 465
Query: 85 SDPVPTPPSPMVELSPYAIPQQPSSEETSGEES 117
S P P PSP SP A PS T + S
Sbjct: 466 SPPPPASPSPPPTASPSA--PSPSKSPTPSKPS 558
Score = 27.7 bits (60), Expect = 1.3
Identities = 21/87 (24%), Positives = 32/87 (36%)
Frame = +1
Query: 33 HGAATQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPP 92
H A+ A + S P + P +S P+T SS P P PP
Sbjct: 295 HAASPGASACRSSQNQTSPPETTLTPPTSSAPATSASSSPPHTLPKSP------SPPPPP 456
Query: 93 SPMVELSPYAIPQQPSSEETSGEESSS 119
SP+ P + P++ ++ S S
Sbjct: 457 SPLSPPPPASPSPPPTASPSAPSPSKS 537
>BP039702
Length = 553
Score = 35.4 bits (80), Expect = 0.006
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +1
Query: 4 EKRSRSTSEDVEGTEDRHRRLHASSRRGDHGAATQAVESSA-PAATMSSPMVESSAPAAS 62
EK+ + + E + RR +SSRR + + A +S+A PA + SSP +A AAS
Sbjct: 16 EKKRKRKLKRK*NEETKQRRTPSSSRRENTPENSTARQSAACPAFSTSSPAPTPAALAAS 195
Query: 63 VPSTRGESSAMDATVLDPVVDLSDPVPTPP 92
PS RG + TV P+P PP
Sbjct: 196SPSVRGR---IRITVF--------PLPLPP 252
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 35.4 bits (80), Expect = 0.006
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 43 SAPAATMSSPMVESSAPAASVPSTR-GESSAMDATVLDPVVDLSDPVPTPP 92
S+PAA M SP +S AS STR G+ A A L P DL P PP
Sbjct: 425 SSPAAAMKSPRSQSHTTMASRNSTR*GQPPAA*AAPLSPSADLGFRPPPPP 577
>TC7995 similar to PIR|S63686|S63686 sterol 24-C-methyltransferase -
Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (98%)
Length = 1524
Score = 34.7 bits (78), Expect = 0.011
Identities = 27/80 (33%), Positives = 33/80 (40%), Gaps = 2/80 (2%)
Frame = -2
Query: 45 PAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVELSPYAIP 104
P+ + PM +P STR S+ T PVV DP P+PP PYA P
Sbjct: 1106 PSPSARFPMRREQSPQCGSSSTRSYPSSTGPTTEAPVVS-PDPTPSPP----RTPPYAPP 942
Query: 105 Q--QPSSEETSGEESSSDHE 122
Q Q SS + S E
Sbjct: 941 Q*CQRSSSALAARRLSRSPE 882
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 34.7 bits (78), Expect = 0.011
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Frame = -2
Query: 20 RHRRLHASSRRGDHGAATQAVESSAPAATMS-------SPMVESSAPAASVPSTRGESSA 72
+HR + G ++ + ESS+P ++S +P S+ + S PS+ S +
Sbjct: 474 KHRWIQPYRLEGLSSSSPPSSESSSPEPSLSDLFLFDGTPAFSPSSLSLSSPSSSSGSKS 295
Query: 73 MDATVLDPVVDLSDPVPTPPSPMVELSPYAIPQQPSSEETSGEESSSDHEREGS 126
+DA+ + + V + Y++P+ SS +S SSS GS
Sbjct: 294 LDAS------------SSSAAATVRRTRYSVPKSSSSSSSSSSSSSSSSSSSGS 169
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 33.9 bits (76), Expect = 0.019
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1
Query: 97 ELSPYAIPQQPSSEETSGEESSSDHEREGSSEEEHILEEELDADVVPEGAHGGDDDLIQR 156
E+ Y ++ EE EE + E EG EEE EEE + +V E A DD+ IQ+
Sbjct: 184 EVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEE---EEEEEEEVEAE-AEEEDDEPIQK 351
Query: 157 V 157
+
Sbjct: 352 L 354
>TC14984 similar to GB|AAM62447.1|21553354|AY085214 glycine-rich RNA binding
protein 7 {Arabidopsis thaliana;} , partial (19%)
Length = 483
Score = 33.9 bits (76), Expect = 0.019
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 43 SAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMV----EL 98
S+PA SSP SSA A + PST+ +S + L S P PTPP V
Sbjct: 188 SSPATLKSSP---SSATATAAPSTKSTTSPPPPSTL*KS---STPAPTPPRAAVPSPKST 349
Query: 99 SPYAIPQQPSSEETS 113
S A P P+S T+
Sbjct: 350 SSAAPPTAPTSSGTT 394
>AW720177
Length = 505
Score = 33.5 bits (75), Expect = 0.024
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 45 PAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDP-VPTPPSPMVELSPYAI 103
P++T SP ++S P+ G SS ++ P +S P P PP P LS +
Sbjct: 130 PSSTKKSPPSKTSKPS-------GHSSESNSPTSKPTSPISPPSFPPPPPPTHSLSTSST 288
Query: 104 PQQPSSEETSGEESSS 119
P P S S +S+
Sbjct: 289 PSPPLSTPPSPSRNSA 336
Score = 26.6 bits (57), Expect = 3.0
Identities = 21/73 (28%), Positives = 28/73 (37%), Gaps = 12/73 (16%)
Frame = +1
Query: 33 HGAATQAVESSAPAATMSSPMVESSAP------------AASVPSTRGESSAMDATVLDP 80
H +T + S P +T SP S+ P A S PS+ ++
Sbjct: 265 HSLSTSSTPSP-PLSTPPSPSRNSATPPPTSLAXSSKPKATSTPSSPPSTATSPTATYYS 441
Query: 81 VVDLSDPVPTPPS 93
VVD S P PPS
Sbjct: 442 VVDSSSTPPLPPS 480
>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
Length = 1036
Score = 33.5 bits (75), Expect = 0.024
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Frame = +3
Query: 38 QAVESSAPAATMSS-------PMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPT 90
Q S+AP A +++ P +SAP+AS S+ SS+ + VL S T
Sbjct: 111 QRPNSTAPTALLTALNPSTAAPAAAASAPSASG*SSSSSSSSSSSAVLASPSTSSTAPTT 290
Query: 91 PPSPM------VELSPYAIPQQPSSEETS 113
PPSP SP P P+S S
Sbjct: 291 PPSPSPPSNSPTSTSPPPQPSPPNSTSPS 377
>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
Length = 1294
Score = 33.1 bits (74), Expect = 0.032
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +2
Query: 51 SPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVELSPYAIPQQPSSE 110
SP+ S+ P S S + +S + DP S P P PPSP P + S+
Sbjct: 134 SPLSPSAPPHPSPSSPQPPNSPSSLSSPDPS---SPPPPPPPSPPNANPPTTLTPPSSTP 304
Query: 111 ETSGEESSSDHER 123
+T + S S H++
Sbjct: 305 QTQKKTSPSTHQK 343
Score = 25.0 bits (53), Expect = 8.6
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 89 PTPPSPMVELSPYAIPQQPSSEETSGEESSS 119
P PPSP LSP PSS T + SS
Sbjct: 571 PEPPSPQTHLSP-----SPSSHPTRTQYPSS 494
>TC19394 similar to UP|NSR1_YEAST (P27476) Nuclear localization sequence
binding protein (P67), partial (6%)
Length = 590
Score = 32.7 bits (73), Expect = 0.041
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 99 SPYAIPQQP-SSEETSGEESSSDHEREGSSEEEHILEEELDADVVPEGAHGGDDDLIQRV 157
+P A P + SS + S SSS E E E+ + E+E + + V A GDD++ + +
Sbjct: 46 NPXARPSKTQSSSDESLSNSSSSSEEEQQIEQINDEEDEEELEAVARPASSGDDEVAEDI 225
Query: 158 AP 159
P
Sbjct: 226 PP 231
>BP044109
Length = 497
Score = 32.3 bits (72), Expect = 0.054
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Frame = +2
Query: 25 HASSRRGDHGAATQAVESSAPAATMSS---PMVESSAPAASVPSTRGESSAMDATVLDPV 81
HAS+ TQ + P+ T S P ++ P+ S P T SS
Sbjct: 158 HASNATSKSTPRTQTPTTPPPSPTSSPKPPPSTFATKPSTSPPETPSSSS---------- 307
Query: 82 VDLSDPVPTPPSPMVELSPYAIPQQPS 108
P PT PSP +P + P PS
Sbjct: 308 ---HGPAPTLPSPPSSSTPTSTPSPPS 379
>TC19884 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
protein, partial (22%)
Length = 373
Score = 32.3 bits (72), Expect = 0.054
Identities = 18/52 (34%), Positives = 25/52 (47%)
Frame = +1
Query: 85 SDPVPTPPSPMVELSPYAIPQQPSSEETSGEESSSDHEREGSSEEEHILEEE 136
SD PTPP P SP A+P P++E + SS H ++ I + E
Sbjct: 217 SDTAPTPPQPASATSP-ALPAVPAAERAASTLPSSKHSPPWNTPR*RITKSE 369
>TC16643 similar to UP|Q9FIH3 (Q9FIH3) Serine/threonine protein kinase-like
protein, partial (28%)
Length = 585
Score = 32.3 bits (72), Expect = 0.054
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 37 TQAVESSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSD-PVPTPPSPM 95
T A + S+P + SS SS P +S ST + A LS+ P P PPSP
Sbjct: 26 TTASKPSSPPSAASSSSRSSSPPPSSSASTANPPNPEPAATTRSEPALSETPTPAPPSPS 205
Query: 96 VELSPYAIPQQPSSEETS 113
+ IP S + S
Sbjct: 206 STPAGPGIPNSRSPWKNS 259
>BP072816
Length = 492
Score = 32.0 bits (71), Expect = 0.071
Identities = 24/78 (30%), Positives = 32/78 (40%)
Frame = +1
Query: 42 SSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVELSPY 101
SSAP+AT ++P + PAA+ S SS + P L P P P
Sbjct: 190 SSAPSAT-AAPPPSTPTPAANTSSKPSTSSKPTTSAAPPASSLLSTPPKPAGP------- 345
Query: 102 AIPQQPSSEETSGEESSS 119
P PSS + S+S
Sbjct: 346 --PSNPSSTNSPAPASTS 393
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 31.6 bits (70), Expect = 0.092
Identities = 26/84 (30%), Positives = 35/84 (40%), Gaps = 7/84 (8%)
Frame = +1
Query: 42 SSAPAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTP-------PSP 94
SS+P ++ SSP AP P+T ++A P S P P+P PSP
Sbjct: 151 SSSPPSSSSSP-----APVPESPTTNSPTTA------PPPPPASSPPPSPTHSPSSSPSP 297
Query: 95 MVELSPYAIPQQPSSEETSGEESS 118
SP A PS +S +S
Sbjct: 298 SAPTSPAATSTPPSPSASSSAVTS 369
>TC20065 similar to UP|AAR20725 (AAR20725) At5g18690, partial (21%)
Length = 592
Score = 31.2 bits (69), Expect = 0.12
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +3
Query: 47 ATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSPMVELSPYAIPQQ 106
A M SP++ S + A S P SS+ LSDP P+ SP LSP P
Sbjct: 108 AFMPSPLLSSYSEAESTPRVPTLSSSP--------ASLSDPPPSSLSPFQVLSPDISPLL 263
Query: 107 PS 108
PS
Sbjct: 264 PS 269
>BP058233
Length = 548
Score = 31.2 bits (69), Expect = 0.12
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +3
Query: 45 PAATMSSPMVESSAPAASVPSTRGESSAMDATVLDPVVDLSDPVPTPPSP 94
P + SSP SSAP AS P + S+A T S P P+P SP
Sbjct: 345 PPSARSSPST-SSAPRASPPISGTPSAAASGTTSISPTPTSPPPPSPSSP 491
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.307 0.125 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,839,408
Number of Sequences: 28460
Number of extensions: 41327
Number of successful extensions: 705
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of query: 192
length of database: 4,897,600
effective HSP length: 85
effective length of query: 107
effective length of database: 2,478,500
effective search space: 265199500
effective search space used: 265199500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0064b.8