BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0063.10
(565 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP035682 241 2e-64
BP071294 223 5e-59
TC17401 49 3e-06
AV427373 43 2e-04
TC12403 similar to UP|Q8L8G6 (Q8L8G6) Histone acetyltransferase ... 35 0.025
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 33 0.12
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%) 33 0.12
TC8094 homologue to UP|EFTU_PEA (O24310) Elongation factor Tu, c... 31 0.47
BP034485 31 0.47
AV777838 31 0.47
BP070882 31 0.61
AV408845 31 0.61
TC9794 30 0.80
AV415539 30 1.0
TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22... 30 1.0
TC14737 similar to UP|Q9LEB3 (Q9LEB3) RNA binding protein 47, pa... 29 1.8
TC9224 similar to GB|AAP21230.1|30102624|BT006422 At3g49750 {Ara... 29 1.8
AV423632 29 1.8
AV409260 29 1.8
BP031757 29 2.3
>BP035682
Length = 484
Score = 241 bits (616), Expect = 2e-64
Identities = 123/123 (100%), Positives = 123/123 (100%)
Frame = -1
Query: 443 GLEMDRSTQAEKDDRGPKDDIPLPLRLRAGIATALGAAAARAKLMADQEDREIEHLVATI 502
GLEMDRSTQAEKDDRGPKDDIPLPLRLRAGIATALGAAAARAKLMADQEDREIEHLVATI
Sbjct: 484 GLEMDRSTQAEKDDRGPKDDIPLPLRLRAGIATALGAAAARAKLMADQEDREIEHLVATI 305
Query: 503 IEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQKTFRSGITRWKDYSY 562
IEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQKTFRSGITRWKDYSY
Sbjct: 304 IEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQKTFRSGITRWKDYSY 125
Query: 563 VKS 565
VKS
Sbjct: 124 VKS 116
>BP071294
Length = 337
Score = 223 bits (569), Expect = 5e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = +3
Query: 1 MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPK 60
MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPK
Sbjct: 9 MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPK 188
Query: 61 VYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGL 109
VYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGL
Sbjct: 189 VYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGL 335
>TC17401
Length = 468
Score = 48.5 bits (114), Expect = 3e-06
Identities = 18/58 (31%), Positives = 41/58 (70%)
Frame = +1
Query: 489 DQEDREIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVL 546
++++ ++E ++ IIE Q+ +Q K+ HF++L+LLM+KE ++E+ K+ +++ +L
Sbjct: 4 EKDESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNMFFLDQLTLL 177
>AV427373
Length = 393
Score = 42.7 bits (99), Expect = 2e-04
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Frame = +3
Query: 431 LISDSERAHEVEGLEMDRSTQAEKD---------DRGPKDDIPLPL-RLRAGIATALGAA 480
+IS S G E D +T +D D G K ++ +L+ + L AA
Sbjct: 132 MISSSHPIKSNSGAENDATTGTGEDHVENATKVKDDGAKTNLDNNFEKLKRAAVSTLAAA 311
Query: 481 AARAKLMADQEDREIEHLVATIIEAQI 507
A +AKL+ADQE+ EI L +++IE Q+
Sbjct: 312 AVKAKLLADQEEDEIRQLTSSLIEKQL 392
>TC12403 similar to UP|Q8L8G6 (Q8L8G6) Histone acetyltransferase complex
component, partial (19%)
Length = 444
Score = 35.4 bits (80), Expect = 0.025
Identities = 26/102 (25%), Positives = 39/102 (37%), Gaps = 1/102 (0%)
Frame = +1
Query: 194 DLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDFILNESNENSV 253
D+ + C +C D F +C++CF G N +
Sbjct: 169 DISGKIRIKCAVCQD-------------FDLCIECFSVGVEVTPHKCNHPYRIMDNLSFP 309
Query: 254 KQSTVWTEGETLLLLESVLKHG-DDWELVAQSVQTKTKLDCI 294
W E +LLLE + +G +W VA+ V TK+K CI
Sbjct: 310 LICPDWNADEEMLLLEGIGTYGFGNWSEVAEYVGTKSKAQCI 435
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 33.1 bits (74), Expect = 0.12
Identities = 18/41 (43%), Positives = 24/41 (57%)
Frame = -2
Query: 115 GEAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSL 155
GE E+EEE E+EEEGE KV VE G + + + S+
Sbjct: 681 GEGEEEEEEEEEEEGE----KVEVEVGVGEELLIKGSRTSI 571
Score = 30.8 bits (68), Expect = 0.61
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = -2
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEG 141
+ E EEE E+EEE EGE+ +V V G
Sbjct: 684 DGEGEEEEEEEEEEEGEKVEVEVGVG 607
>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
Length = 1036
Score = 33.1 bits (74), Expect = 0.12
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -1
Query: 118 EKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGG 177
++EE+ +DE+ E E + A G+R V+ L +S GGGG+V GG
Sbjct: 241 DEEEDEDDED*PEAEGAEAAAAGAAVEGLRAVSRAVGAVELGL-CGGESWVGGGGAVCGG 65
Query: 178 AG 179
G
Sbjct: 64 GG 59
>TC8094 homologue to UP|EFTU_PEA (O24310) Elongation factor Tu, chloroplast
precursor (EF-Tu), partial (60%)
Length = 1092
Score = 31.2 bits (69), Expect = 0.47
Identities = 28/83 (33%), Positives = 35/83 (41%), Gaps = 3/83 (3%)
Frame = -1
Query: 102 LFLESCGLINYGVGEAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAP 161
LF S L+ G + ER E G+G V V + A + V P L A
Sbjct: 459 LFRGSVDLVVLLGGAVAEGGERHGEGGGQGGLAVVDVADCAD--VHVGLLPLELAAGGAD 286
Query: 162 ---RNAKSGGGGGGSVSGGAGVK 181
R +GGGGGG V G GV+
Sbjct: 285 GEGRAVAAGGGGGGDVEDGGGVQ 217
>BP034485
Length = 485
Score = 31.2 bits (69), Expect = 0.47
Identities = 19/69 (27%), Positives = 30/69 (42%)
Frame = +3
Query: 113 GVGEAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGGGGG 172
G GE + + +++ G G ++G G ++ + P + KSGG GGG
Sbjct: 159 GGGETANKNKNKNKNNGGGNNKGKEGKKGGGGGGKLDKIDFDFQDFDIPSHGKSGGKGGG 338
Query: 173 SVSGGAGVK 181
GG G K
Sbjct: 339 --GGGKGNK 359
>AV777838
Length = 565
Score = 31.2 bits (69), Expect = 0.47
Identities = 23/55 (41%), Positives = 28/55 (50%)
Frame = -3
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGGG 170
E E+EEE E+EEE E E EEG P + VV P ++ R GGGG
Sbjct: 272 EEEEEEEEEEEEEEEEE------EEGGP--VMVV------WPAASSREEARGGGG 150
>BP070882
Length = 496
Score = 30.8 bits (68), Expect = 0.61
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = -2
Query: 115 GEAEKEEEREDEEEGEGERCKVRVEE 140
GE E+EE R EE G ERC ++VEE
Sbjct: 111 GEEEREEWRM*EENGR*ERCLLQVEE 34
>AV408845
Length = 429
Score = 30.8 bits (68), Expect = 0.61
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -3
Query: 105 ESCGLINY----GVGEAEKEEEREDEEEGEGE 132
E CG+ N G E E+EEE E+EEE EGE
Sbjct: 184 EGCGVKNEKRVRG*KEEEEEEEEEEEEEEEGE 89
>TC9794
Length = 748
Score = 30.4 bits (67), Expect = 0.80
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 91 VGDVTLLRKVFLFLESCG 108
+GDVTLL KVFLFLE+ G
Sbjct: 23 LGDVTLLHKVFLFLEN*G 76
>AV415539
Length = 419
Score = 30.0 bits (66), Expect = 1.0
Identities = 18/38 (47%), Positives = 19/38 (49%)
Frame = -3
Query: 113 GVGEAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVA 150
G E+E E E EEEGEGE EE P G VA
Sbjct: 123 GAAAGEEEREGEVEEEGEGEVGGYGGEEEGPRGAP*VA 10
>TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22K18_140
{Arabidopsis thaliana;}, partial (29%)
Length = 621
Score = 30.0 bits (66), Expect = 1.0
Identities = 25/68 (36%), Positives = 33/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 116 EAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGG---GGG 172
E E+EEE E+EEEGE VE G VA P ++ +K+GGG GG
Sbjct: 153 EEEEEEEEEEEEEGE-------VEMGF-----TVAPPGFDSLGNSAARSKTGGGIEPEGG 296
Query: 173 SVSGGAGV 180
+ + GV
Sbjct: 297 AAATALGV 320
>TC14737 similar to UP|Q9LEB3 (Q9LEB3) RNA binding protein 47, partial (32%)
Length = 803
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/51 (35%), Positives = 23/51 (44%)
Frame = +2
Query: 139 EEGAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAGVKLPPLASFA 189
++ P + + T S P S P A SGG GGG S A P A+ A
Sbjct: 266 DDDVPAALHALCT--SSLPASPPAAASSGGCGGGGASAAAPTTPSPAAAEA 412
>TC9224 similar to GB|AAP21230.1|30102624|BT006422 At3g49750 {Arabidopsis
thaliana;}, partial (77%)
Length = 1318
Score = 29.3 bits (64), Expect = 1.8
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 340 SKTQNQTPELTSEKEPNG--DAVNESPSKRQRVA 371
S+ +NQ E TS+ +PN D +P +RQRVA
Sbjct: 1071 SEAENQASESTSQSDPNNG*DRQPFTPERRQRVA 970
>AV423632
Length = 484
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -1
Query: 115 GEAEKEEEREDEEEGEGERCKVR 137
GE ++EEE E EE+GE ER + R
Sbjct: 232 GEEDEEEESEGEEQGEDERGRRR 164
>AV409260
Length = 411
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 156 KPLSAPRNAKSGGGGGGSVSGGAG 179
KP+ APR ++SGGG G SG G
Sbjct: 277 KPVRAPRLSRSGGGAGVGGSGPGG 206
>BP031757
Length = 507
Score = 28.9 bits (63), Expect = 2.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 115 GEAEKEEEREDEEEGEGERCKVR 137
G E+EEE+ EEEG G R + R
Sbjct: 205 GRGEEEEEKVQEEEGRGRRRRTR 273
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,599,864
Number of Sequences: 28460
Number of extensions: 112258
Number of successful extensions: 1408
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of query: 565
length of database: 4,897,600
effective HSP length: 95
effective length of query: 470
effective length of database: 2,193,900
effective search space: 1031133000
effective search space used: 1031133000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0063.10