BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.3
(388 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP054707 230 3e-61
BP035392 87 6e-18
BP040733 84 4e-17
BP053309 58 2e-09
BP068105 54 6e-08
BP043372 49 1e-06
BP039423 47 7e-06
BP050427 46 9e-06
TC18715 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Cr... 42 2e-04
TC8085 similar to GB|BAB03033.1|11994717|AP001300 AtDMC1 (meioti... 41 3e-04
BP048413 36 0.012
TC15387 29 1.5
TC10733 similar to UP|Q9SQ81 (Q9SQ81) Gibberellin 2 beta-hydroxy... 28 2.6
TC19801 similar to UP|Q9XG83 (Q9XG83) GA 2-oxidase, partial (34%) 28 2.6
AV413773 28 3.4
AV407580 27 5.8
BP047118 27 5.8
AV418421 27 5.8
AV425984 27 7.6
TC13168 27 7.6
>BP054707
Length = 545
Score = 230 bits (587), Expect = 3e-61
Identities = 112/113 (99%), Positives = 112/113 (99%)
Frame = -2
Query: 276 YASPQPLAAHFPPEVEEKLVGAEVLFKVRNDVRRLYDGCFCYDVLHICSDSETMDKFSAK 335
YASPQPLAAHFPPEVEEKLVGAEVLFKVRNDVRRLYDGCFCYDVLHICSDSETMDKFSAK
Sbjct: 544 YASPQPLAAHFPPEVEEKLVGAEVLFKVRNDVRRLYDGCFCYDVLHICSDSETMDKFSAK 365
Query: 336 RTSVTLVESKSDSRVTYLEEDNKQAVCVVEKVGLLDEDEMISNVKHNWNQVEG 388
RTSVTLVESKSDSRVTYLEEDNK AVCVVEKVGLLDEDEMISNVKHNWNQVEG
Sbjct: 364 RTSVTLVESKSDSRVTYLEEDNKPAVCVVEKVGLLDEDEMISNVKHNWNQVEG 206
>BP035392
Length = 464
Score = 86.7 bits (213), Expect = 6e-18
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Frame = +2
Query: 146 GFEIEEPVEYLGYRDSEFNLQDDFIHLHPAKTLLQLIHTEQRGVFIVQARIVSVIKAAGW 205
G +EPV++L R E N++ D ++LHP KT+ QL +++ ++IV IV+ +K W
Sbjct: 155 GIRTDEPVQFLRPRVPEVNMRQDMLNLHPKKTISQLSESDEEAIYIVHGGIVAALKNEAW 334
Query: 206 AYPSCRCYSELKVVNHGYSCSRCCRTMIMIFYFY----RYRLNVHVSDG 250
YPSC C+ EL V Y C C R +FY RYR+NV V DG
Sbjct: 335 TYPSCICHGELIVRTGVYECVTCQR------FFYTMIRRYRVNVEVFDG 463
>BP040733
Length = 457
Score = 84.0 bits (206), Expect = 4e-17
Identities = 44/119 (36%), Positives = 66/119 (54%), Gaps = 5/119 (4%)
Frame = +1
Query: 117 LIVQSIPNVTKLHINPVVEDQSVFNERF--SGFEIEEPVEYLGYRDSEFNLQDDFIHLHP 174
L ++++P+ +KL +NP E S F R G + PV++L R E N++ D ++LHP
Sbjct: 91 LFMRTLPHTSKLFVNPGFEVVSSFTNRLYAGGIRTDVPVQFLRPRVLEVNMRQDMLNLHP 270
Query: 175 AKTLLQLIHTE---QRGVFIVQARIVSVIKAAGWAYPSCRCYSELKVVNHGYSCSRCCR 230
KT+ QL ++ Q ++IV IV+ +K W YPSC C+ EL V Y C C R
Sbjct: 271 KKTISQLSESDEFSQEAIYIVHGGIVAALKNEAWTYPSCICHGELIVRTGVYECVTCQR 447
>BP053309
Length = 484
Score = 58.2 bits (139), Expect = 2e-09
Identities = 35/101 (34%), Positives = 56/101 (54%), Gaps = 3/101 (2%)
Frame = +2
Query: 21 WTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKEDPITK---NIVPGGVY 77
W +KVRV+ +W S ++ ++LID E VKIE + K+ + K +V G VY
Sbjct: 56 WRVKVRVLRVWDMFPVGEPSKPYAIHVVLIDVEGVKIEGII-KKGMLKKFRGELVEGSVY 232
Query: 78 KFSIFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSVESRELI 118
+ + F V N G R T H +K++ +S+T + P +S E+I
Sbjct: 233 RITYFNVISNSGAFRATEHGFKIVFNSQTKVVP--DSGEMI 349
>BP068105
Length = 476
Score = 53.5 bits (127), Expect = 6e-08
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Frame = +2
Query: 116 ELIVQSIPNVTKLHINPVVEDQSVFNERFS--GFEIEEPVEYLGYRDSE---FNLQDDFI 170
++++Q++ N T L NP + F E + G + + P+ + D E L+++
Sbjct: 143 DVVIQNVMNATILLWNPDTAEAVCFREGLALHGMDGDMPLAEIDDDDDEVRVITLEEELG 322
Query: 171 HLHPAKTLLQLIHTEQRGVFIVQARIVSVIKAAGWAYPSCRCYSELKV 218
L+P K + +L T + G+FIV A+I +++ W Y +C C+ + V
Sbjct: 323 RLYPRKNISELNDTTEDGIFIVMAKICGLVEGDKWWYSACSCHKAVTV 466
>BP043372
Length = 541
Score = 49.3 bits (116), Expect = 1e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Frame = +2
Query: 51 DREAVKIEAYVCKEDPITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMIFP 110
DR KI+A C+ P+T+NI G VY+ F+V N+ + R T H ++L+ H+ T I
Sbjct: 89 DRMGTKIQASACRRHPLTRNIHLGKVYRIMNFRVVPNNTI-RFTTHDFRLIFHTCTQIVQ 265
Query: 111 SVESR 115
S + R
Sbjct: 266 SFDVR 280
>BP039423
Length = 566
Score = 46.6 bits (109), Expect = 7e-06
Identities = 26/69 (37%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Frame = +1
Query: 44 SLKMILIDREAVKIEAYVCKE--DPITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLL 101
++ ++LID E VKIEAY+ K G VYK + F V N G R H +K+
Sbjct: 40 AINLVLIDEEGVKIEAYIKKGYMSKFRGEFAEGNVYKITYFAVGDNGGSFRACEHAFKIF 219
Query: 102 LHSRTMIFP 110
SRT P
Sbjct: 220 FTSRTRAVP 246
>BP050427
Length = 508
Score = 46.2 bits (108), Expect = 9e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = -1
Query: 166 QDDFIHLHPAKTLLQLIHTEQRGVFIVQARIVSVIKAAGWAYPSCRCY 213
+++F+ L+P K L +L TE+ GVF V AR+ S+ + W Y +C C+
Sbjct: 232 EEEFLTLYPRKDLKELNETEEDGVFTVVARVTSLAEGEKWWYSACSCH 89
>TC18715 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Crooked neck)
protein-like, partial (6%)
Length = 889
Score = 41.6 bits (96), Expect = 2e-04
Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 286 FPPEVEEKLVGAEVLFKVRNDVRRLYDGCFCYDVLHICSDSETMDKFSAKRTSVTLVESK 345
+P ++EE L G E+LFKV N+ +D C+ +L IC+D + F VT ++K
Sbjct: 579 YPDDIEECLAGKEMLFKVCNNSGVKHDRDDCFQILRICTDLGIIAMFHEHDVLVTPKQAK 758
Query: 346 SD---SRVTYLEEDNK 358
S + EED +
Sbjct: 759 FSPPFSELDITEEDGE 806
>TC8085 similar to GB|BAB03033.1|11994717|AP001300 AtDMC1 (meiotic
recombination protein)-like protein {Arabidopsis
thaliana;} , partial (8%)
Length = 500
Score = 41.2 bits (95), Expect = 3e-04
Identities = 30/91 (32%), Positives = 44/91 (47%), Gaps = 2/91 (2%)
Frame = +3
Query: 26 RVICLWKTPEEMLESSHSSLKMILIDR--EAVKIEAYVCKEDPITKNIVPGGVYKFSIFQ 83
RVI +W T E + S+ ++L+D + E ++ + K I G VY F F
Sbjct: 204 RVIRVWNTIAEGEGNPPSTYILLLMDHKDQTTHAECWLSSSECHAKRINEGLVYSFEYFF 383
Query: 84 VTCNHGVNRVTNHRYKLLLHSRTMIFPSVES 114
V N + H+YK+ L +RTMIF ES
Sbjct: 384 V*HNFQALSSSRHQYKIHLLNRTMIFKYDES 476
>BP048413
Length = 542
Score = 35.8 bits (81), Expect = 0.012
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Frame = -3
Query: 180 QLIHTEQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCRTMIMIFYF 238
QL ++ + A I V GW+Y +C +C + + ++C +C +
Sbjct: 540 QLNEVQKECYVVTVAXIDKVCVGNGWSYEACFKCXRKADCSSLPFTCPKCGKKNTETVP- 364
Query: 239 YRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEF--AYASPQPLAAHFPPEVEEKLVG 296
R+R+ V VS SS F+L D E ++K + A PE + ++G
Sbjct: 363 -RFRVEVMVSYNNNSSKFVLWDRECIXLVKXTAIDLKKXLLDEGEFDAMAVPEPIDCILG 187
Query: 297 AEVLFKVR 304
FKV+
Sbjct: 186 KLFAFKVK 163
>TC15387
Length = 621
Score = 28.9 bits (63), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = +3
Query: 311 YDGCFCYDVLHICSDSETMDKFSAKRTS 338
Y G CY+VL IC D E + +F ++ TS
Sbjct: 3 YKGYPCYEVL*ICFDPEIVSRFFSEITS 86
>TC10733 similar to UP|Q9SQ81 (Q9SQ81) Gibberellin 2 beta-hydroxylase,
partial (52%)
Length = 616
Score = 28.1 bits (61), Expect = 2.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 258 LSDPEATHIIKKACEEFAY 276
LS P+A II KACEEF +
Sbjct: 205 LSKPDAKSIIVKACEEFGF 261
>TC19801 similar to UP|Q9XG83 (Q9XG83) GA 2-oxidase, partial (34%)
Length = 508
Score = 28.1 bits (61), Expect = 2.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 258 LSDPEATHIIKKACEEFAY 276
LSDPEA +I +AC+EF +
Sbjct: 266 LSDPEAKSLIVQACKEFGF 322
>AV413773
Length = 417
Score = 27.7 bits (60), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 188 GVFIVQARIVSVIKAAGWAYPSCRCY 213
GVFIV A+I ++ W Y +C C+
Sbjct: 323 GVFIVLAQIGGLLDGEKWWYSACGCH 400
>AV407580
Length = 318
Score = 26.9 bits (58), Expect = 5.8
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -2
Query: 322 ICSDSETMDKFSAKRTSVTLVESKSDSRVTYLEEDNKQAVCVVEKVGLLDEDEMISN 378
+ SDS T K A+ S ++ K + V E+N V V+ VG+ +EDE SN
Sbjct: 290 LISDSITPRKI-ARALSKYKIKMKMKTEVVVEGEENCVGVMVLL*VGVAEEDESCSN 123
>BP047118
Length = 476
Score = 26.9 bits (58), Expect = 5.8
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -2
Query: 258 LSDPEATHIIKKACEEFAY 276
LS P+A +I KACEEF +
Sbjct: 283 LSKPDAKTLIVKACEEFGF 227
>AV418421
Length = 286
Score = 26.9 bits (58), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 301 FKVRNDVRRLYDGCFCYDVLHICSD 325
F VRN V +Y C++V+ IC D
Sbjct: 67 FMVRNKVGMMYGKDDCFEVMRICCD 141
>AV425984
Length = 351
Score = 26.6 bits (57), Expect = 7.6
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -1
Query: 222 GYSCSRCCRTMIMIFYFYRYRLNVHVSDGVQSSVFILSDP 261
G+SC C M FYFY +LNV SS FIL P
Sbjct: 228 GFSC*SCI--FCMFFYFYCKKLNVICF----SSWFILPSP 127
>TC13168
Length = 505
Score = 26.6 bits (57), Expect = 7.6
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 322 ICSDSETMDKFSAKRTSVTLVESKSDSRVTYLEEDNKQAVCVVEKV-GLLDEDEMISNVK 380
IC S K ++ TS+ ++ +S ++E+D+ + KV G LD D ++ N K
Sbjct: 43 ICGTSSIGPKVESRLTSLRVINHIGESFTRFVEDDSH-----LRKVSGSLD*DSIVGNGK 207
Query: 381 HNWNQ 385
NQ
Sbjct: 208 *ALNQ 222
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,649,469
Number of Sequences: 28460
Number of extensions: 113809
Number of successful extensions: 646
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of query: 388
length of database: 4,897,600
effective HSP length: 92
effective length of query: 296
effective length of database: 2,279,280
effective search space: 674666880
effective search space used: 674666880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0060.3