BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.14
(651 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV767121 146 9e-36
TC18710 143 8e-35
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 100 6e-22
AV780221 99 2e-21
AV780705 64 6e-11
BP060613 57 7e-09
CB828232 57 1e-08
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 50 1e-06
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 50 1e-06
BP083121 34 2e-04
BP085058 35 0.049
AV426437 35 0.049
TC13572 30 1.2
CN825360 29 2.1
AV424786 28 3.5
TC15920 28 3.5
TC11917 27 7.9
>AV767121
Length = 525
Score = 146 bits (369), Expect = 9e-36
Identities = 70/112 (62%), Positives = 88/112 (78%)
Frame = +2
Query: 540 LALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKR 599
L+ WKQK +SFGGRI LIQSVL+ALPL FLSFF++P V K C R+MR+FLWG S+ +
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181
Query: 600 IAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
IA VKW DVC+PK++GGLGIKDL FN++LLGK WR+ T+ +LW +VI A
Sbjct: 182 IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEA 337
>TC18710
Length = 843
Score = 143 bits (361), Expect = 8e-35
Identities = 81/216 (37%), Positives = 117/216 (53%), Gaps = 4/216 (1%)
Frame = +2
Query: 214 GPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRP 273
G DG N F ++ DV+K V A+ F R N + + LIPKV P+ +N+FRP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367
Query: 274 ISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRK--- 330
IS +YKVISK+ RL + +I Q F+ R + D+++++ E H + R
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547
Query: 331 -KQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTG 389
+ SII K+D KAYD V+W FLE + F + W+ IM + S + +NG
Sbjct: 548 GRNHSII-KLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGP 724
Query: 390 EFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRL 425
+ +RGLRQGDP +P+LFLF E L+ L QNS +
Sbjct: 725 KLLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNM 832
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 100 bits (250), Expect = 6e-22
Identities = 62/179 (34%), Positives = 96/179 (52%), Gaps = 3/179 (1%)
Frame = -3
Query: 117 GDQNSGFFHSTINWKRRTNSIVGLW-VEGVWEEDPSRVKAAVESFFEAKFKSDV*D--RP 173
GD N+ FFH++ +R N I+ + G+W E +V A ++F + S R
Sbjct: 569 GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQYLRE 390
Query: 174 RLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGD 233
L +P K ++D N L + EIK+AV++ G K+PG DG N F +Q +++K D
Sbjct: 389 CLAPIP-KLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKND 213
Query: 234 VIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRL 292
V A+ +F+ G N + + LIPK+ + + +FRPIS IYKVISK++ RL
Sbjct: 212 VNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARL 36
>AV780221
Length = 461
Score = 99.0 bits (245), Expect = 2e-21
Identities = 48/97 (49%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Frame = +3
Query: 554 ICLIQSVLSALPLIFLSFFRIPACVVKV-CNRIMRDFLWGASDGGKRIAWVKWLDVCQPK 612
+CLI+SVL ALPL L FF++P N F +GGK+IAWVKW VC+PK
Sbjct: 3 LCLIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPK 182
Query: 613 DVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVI 649
D GGLG+++L LFN++LLGKW WR ++ LW +V+
Sbjct: 183 DEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVL 293
>AV780705
Length = 524
Score = 64.3 bits (155), Expect = 6e-11
Identities = 41/155 (26%), Positives = 76/155 (48%), Gaps = 4/155 (2%)
Frame = -2
Query: 501 SFLNCKVMTIPFVYLGIPV--GARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQ 558
+ L+ + P YLG+P G S W + +K++ +L WK+ L++ G+ LI+
Sbjct: 523 NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVW--IEEKVKEKLEGWKETLLNQAGKEVLIK 350
Query: 559 SVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQP--KDVGG 616
+++ A+P ++ P ++ DF W S G + + + P K+ GG
Sbjct: 349 AIIQAIPSYAMTIVHFPKTFCNSLYALVADFWW-KSQGEGAVEYTGAVGTK*PLSKEKGG 173
Query: 617 LGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
+G +DL N + L + WR T +ALW +V+++
Sbjct: 172 VGFRDLRTQNLAFLARQAWRVLTNPEALWVRVMKS 68
>BP060613
Length = 378
Score = 57.4 bits (137), Expect = 7e-09
Identities = 25/62 (40%), Positives = 38/62 (60%)
Frame = +1
Query: 590 LWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVI 649
+W +S G + + W KW + + KD GGLG KD ++ N++LL K WR ALW Q++
Sbjct: 43 VWWSSKGTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222
Query: 650 RA 651
+A
Sbjct: 223 KA 228
>CB828232
Length = 532
Score = 56.6 bits (135), Expect = 1e-08
Identities = 28/50 (56%), Positives = 34/50 (68%)
Frame = +1
Query: 543 WKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWG 592
WK +S G R+C + VLS+LPL FLSFF+I CV KVC +I FLWG
Sbjct: 388 WKTLCLS-GARVCCFKMVLSSLPLFFLSFFKI-KCVAKVCKQIQSRFLWG 531
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 50.1 bits (118), Expect = 1e-06
Identities = 32/125 (25%), Positives = 63/125 (49%)
Frame = -3
Query: 440 EVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQF 499
E+S L FAD+ + ++++ + +L F+ +SGL N KS++ + ET +Q
Sbjct: 376 EISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFILVKET-TKNQI 200
Query: 500 ASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQS 559
+ L K +P LG+P + ++ + ++L W + +S+ GR+ LI S
Sbjct: 199 TNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLINS 20
Query: 560 VLSAL 564
+L ++
Sbjct: 19 ILFSM 5
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 49.7 bits (117), Expect = 1e-06
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Frame = -3
Query: 34 LKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQKINILDVKEEETGLSQEEVATRESLLFD 93
L K + L +W+ F E+ ++ L +G +E+ R+ L D
Sbjct: 459 LSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEHLQ-NYSNSGEDWQEIKQRKMRLKD 283
Query: 94 FWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLW-VEGVWEEDPSR 152
W R E Q++R +WL GD+N+ FFH++ +R N I + ++G W
Sbjct: 282 LW---RQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRERNRIERIKDMQGTWVRSQLA 112
Query: 153 VKAAVESFFEAKFKS 167
+ V F+ +KS
Sbjct: 111 INRDVPDFYPDIYKS 67
>BP083121
Length = 527
Score = 34.3 bits (77), Expect(2) = 2e-04
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = +3
Query: 405 PFLFLFVAEGLNGLFQNSVRLSKFKG 430
P FL VAEGLNGL + ++KFKG
Sbjct: 312 PSFFLIVAEGLNGLLKQVATINKFKG 389
Score = 27.7 bits (60), Expect(2) = 2e-04
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 390 EFKMERGLRQGDPLAPFLF 408
EFKM + L Q DP+A FLF
Sbjct: 266 EFKMWKSLHQVDPMAAFLF 322
>BP085058
Length = 452
Score = 34.7 bits (78), Expect = 0.049
Identities = 23/101 (22%), Positives = 47/101 (45%), Gaps = 5/101 (4%)
Frame = +2
Query: 507 VMTIPFV-----YLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVL 561
+ +IPF Y+ P+ + + + ++ +RLA K L++ R+ L + VL
Sbjct: 101 ITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTLAKPVL 280
Query: 562 SALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAW 602
SA+ + + +P + ++R F+W +G +AW
Sbjct: 281 SAISMYVMQLNWLPQSICDQICTVVRHFVWENVNGIPLVAW 403
>AV426437
Length = 303
Score = 34.7 bits (78), Expect = 0.049
Identities = 11/24 (45%), Positives = 19/24 (78%)
Frame = +1
Query: 598 KRIAWVKWLDVCQPKDVGGLGIKD 621
++IAW+ W +C+PK + GLG+K+
Sbjct: 223 RKIAWINWETICKPKWLRGLGVKN 294
>TC13572
Length = 534
Score = 30.0 bits (66), Expect = 1.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 626 NRSLLGKWLWRWRTKKQAL 644
N++LLGKWLWR +T +L
Sbjct: 534 NKALLGKWLWRLKTVPNSL 478
>CN825360
Length = 600
Score = 29.3 bits (64), Expect = 2.1
Identities = 15/36 (41%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Frame = +2
Query: 8 LDDPRITTVVTSTWKDMKVKGWGS-YVLKEKLKGLR 42
L DPR T+ +TS + MK GW + VL+ +L+ R
Sbjct: 239 LQDPRATSSITSRSRPMKCPGWRNLQVLRPRLRQCR 346
>AV424786
Length = 227
Score = 28.5 bits (62), Expect = 3.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 520 GARASCLKTWEPVIKKMRNRLALWKQKLISF 550
G C KTW PV +KM+ +W ++ I +
Sbjct: 98 GKEHGCQKTW*PVWRKMKEVRGIWCRRRIEY 6
>TC15920
Length = 681
Score = 28.5 bits (62), Expect = 3.5
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 512 FVYLGIPVGARASCLK-TWEPVIKKMRNRLALW 543
FVY+GI +A+CL+ TW+ V+K R +L+
Sbjct: 578 FVYIGITFVWQANCLQFTWKIVVKMSNARFSLF 676
>TC11917
Length = 820
Score = 27.3 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 630 LGKWLWRWRTKKQALWCQ 647
L +WLW+W ++ AL CQ
Sbjct: 188 LQQWLWQWNQEQFALLCQ 135
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,269,864
Number of Sequences: 28460
Number of extensions: 207484
Number of successful extensions: 1563
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of query: 651
length of database: 4,897,600
effective HSP length: 96
effective length of query: 555
effective length of database: 2,165,440
effective search space: 1201819200
effective search space used: 1201819200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0060.14