TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0060.1
         (358 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV424299                                                              192  9e-50
TC17609 similar to UP|Q9SIR3 (Q9SIR3) At2g25300 protein, partial...    86  2e-36
TC18029 similar to UP|Q8RW34 (Q8RW34) Beta 1,3-glycosyltransfera...    99  8e-22
BP035849                                                               93  8e-20
AV776288                                                               80  5e-16
TC18308 similar to UP|Q8RX55 (Q8RX55) At1g74800/F25A4_38, partia...    45  1e-05
TC8327 UP|VATL_PHAAU (O22552) Vacuolar ATP synthase 16 kDa prote...    30  0.81
BP065280                                                               28  3.1
AV421977                                                               27  5.3

>AV424299 
          Length = 426

 Score =  192 bits (487), Expect = 9e-50
 Identities = 99/99 (100%), Positives = 99/99 (100%)
 Frame = +1

Query: 1   MRSWGSQSRLSGQSFGSRVSALVFAMIATMATVYVAGRLWQDAENRVHLVEELEKRTGQG 60
           MRSWGSQSRLSGQSFGSRVSALVFAMIATMATVYVAGRLWQDAENRVHLVEELEKRTGQG
Sbjct: 130 MRSWGSQSRLSGQSFGSRVSALVFAMIATMATVYVAGRLWQDAENRVHLVEELEKRTGQG 309

Query: 61  QSAVSVDDTLKVIACREQQKKLSALEMELTAARKEGFVS 99
           QSAVSVDDTLKVIACREQQKKLSALEMELTAARKEGFVS
Sbjct: 310 QSAVSVDDTLKVIACREQQKKLSALEMELTAARKEGFVS 426


>TC17609 similar to UP|Q9SIR3 (Q9SIR3) At2g25300 protein, partial (45%)
          Length = 461

 Score = 85.9 bits (211), Expect(2) = 2e-36
 Identities = 38/74 (51%), Positives = 48/74 (64%)
 Frame = +3

Query: 200 KKIKSFFIYAVDNWDAEFYAKVNDDVYVNLDALGGVLTSHLDKPRVYIGCMKSGQVFSEP 259
           KK K     AV NWDA+FY KV+D + ++L+ L  +L     +   YIGCMKSG V SE 
Sbjct: 240 KKQKCSLXTAVQNWDADFYVKVDDSIDIDLEGLIELLDHRRGQEGAYIGCMKSGDVISEE 419

Query: 260 TQKWYEPDWWKFGD 273
            + WYEP+WWKFGD
Sbjct: 420 GKPWYEPEWWKFGD 461



 Score = 83.6 bits (205), Expect(2) = 2e-36
 Identities = 42/79 (53%), Positives = 55/79 (69%)
 Frame = +1

Query: 126 FGRRKNRDAIRKAWMPTGTAMKKLADQKGVIVRFVIGRSANRGDSLDKEIETEISQTNDF 185
           FG R  R+  R +WMP G A+KKL +++GV++RFVIGRS NRGDSLD+ I+ E   T DF
Sbjct: 19  FGSRLKRNVFRGSWMPRGDALKKL-EERGVVIRFVIGRSPNRGDSLDRNIDEENRSTKDF 195

Query: 186 IILDNQVEAPEERAKKIKS 204
           +IL+   EA E  A K K+
Sbjct: 196 LILEGHEEAQERVA*KSKN 252


>TC18029 similar to UP|Q8RW34 (Q8RW34) Beta 1,3-glycosyltransferase I-like
           protein, partial (15%)
          Length = 519

 Score = 99.4 bits (246), Expect = 8e-22
 Identities = 46/47 (97%), Positives = 46/47 (97%)
 Frame = +3

Query: 294 QFISINRLILRTYAHDDISTGSWFIGLDVMHVDETKFCCSSRSPGMI 340
           QFISINRLILRTYAHDDISTGSWFIGLDVMHVDETKFCCSSRSPG I
Sbjct: 3   QFISINRLILRTYAHDDISTGSWFIGLDVMHVDETKFCCSSRSPGAI 143


>BP035849 
          Length = 552

 Score = 92.8 bits (229), Expect = 8e-20
 Identities = 42/74 (56%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
 Frame = -2

Query: 262 KWYEPDWWKFGD-GKSYFRHASGDLYVISKALAQFISINRLILRTYAHDDISTGSWFIGL 320
           K++E + WKFG+ G  YFRHA+G LY ISK LA +ISIN  IL  YA++D+S GSW +GL
Sbjct: 530 KYHEAEHWKFGEEGNKYFRHATGQLYAISKDLATYISINWPILHKYANEDVSLGSWLLGL 351

Query: 321 DVMHVDETKFCCSS 334
           +V HVDE   CC +
Sbjct: 350 EVEHVDERSMCCGT 309


>AV776288 
          Length = 559

 Score = 80.1 bits (196), Expect = 5e-16
 Identities = 43/112 (38%), Positives = 68/112 (60%)
 Frame = +3

Query: 154 GVIVRFVIGRSANRGDSLDKEIETEISQTNDFIILDNQVEAPEERAKKIKSFFIYAVDNW 213
           G+  RFVIGR+++R  S    ++ E+++ +DF+ LD + E  +   K + +FF  A    
Sbjct: 231 GLAFRFVIGRTSDR--SKMSVLKREVAEYDDFMQLDMEEEYSKLPYKTL-AFFKAAYALL 401

Query: 214 DAEFYAKVNDDVYVNLDALGGVLTSHLDKPRVYIGCMKSGQVFSEPTQKWYE 265
           +A+FY K +DD+Y+  D L  +L      P+ YIGCM+ G VF++P  KWYE
Sbjct: 402 EADFYVKADDDIYLRPDRLSLLLAKERSHPQTYIGCMRKGPVFTDPKLKWYE 557


>TC18308 similar to UP|Q8RX55 (Q8RX55) At1g74800/F25A4_38, partial (47%)
          Length = 995

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 7/210 (3%)
 Frame = +2

Query: 112 PTKKVLSVIGVMTTFGRRKNRDAIRKAWMPTGTAMKKLADQKGVIVRFVIGRSANRGDSL 171
           P   V   IGV++       R A+RK+WM       +L     V  RF +   + +   +
Sbjct: 392 PDSGVELFIGVLSAGNHFAERMAVRKSWM-----QHRLMKSSVVAARFFVALHSRQ--EI 550

Query: 172 DKEIETEISQTNDFIILDNQVEAPEERAKKIKSFFIYAVDNWDAEFYAKVNDDVYVNLDA 231
           + E++ E     D +I+   ++  +    K  +   Y V    A++  K +DD +V +DA
Sbjct: 551 NIELKKEAEYFGDIVIVP-YMDNYDLVVLKTVAICEYGVHTVSAKYIMKGDDDTFVRVDA 727

Query: 232 LGGVLTSHLDKPRVYIGCMKSGQVFSEPTQ--KW---YEPDWWKFGDGKSYFRHASGDLY 286
           +        D    YIG +     + +P +  KW   YE +W      + Y  +A+G  Y
Sbjct: 728 VIDEARKVPDDTSFYIGNI---NYYHKPLRYGKWAVTYE-EW----PEEDYPPYANGPGY 883

Query: 287 VISKALAQFI--SINRLILRTYAHDDISTG 314
           ++S  +A++I        LR +  +D+S G
Sbjct: 884 ILSSDIARYIVSEFEMHKLRLFKMEDVSMG 973


>TC8327 UP|VATL_PHAAU (O22552) Vacuolar ATP synthase 16 kDa proteolipid
           subunit  , complete
          Length = 889

 Score = 29.6 bits (65), Expect = 0.81
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
 Frame = -2

Query: 85  LEMELTAARKEG------FVSKHLSGDNEKQKHPTKKVLSVIGVMTTFGRRKNRDAIRKA 138
           L   LT+ R+E          K LS D +K     K  L  IG  T+     N  A R+ 
Sbjct: 591 LSSGLTSTRREDDTDDETIQGKSLSEDEDKNHSNKKFWLLCIGSDTSITNNTNSHAGREP 412

Query: 139 WMPTGTAMKKLADQKGVIVRFVIG-RSANRGDSLDKEIETEISQTND 184
             P G    ++      +VRF +   S+   +S +K I T+ S  N+
Sbjct: 411 SKPAGKTRGEMRITIKEVVRFGLRVNSSTDNNSNNKSINTQNSSHNN 271


>BP065280 
          Length = 470

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 13/46 (28%), Positives = 24/46 (51%)
 Frame = -2

Query: 287 VISKALAQFISINRLILRTYAHDDISTGSWFIGLDVMHVDETKFCC 332
           ++S  L + + I+R ++ T +   I++GSW       H  +  FCC
Sbjct: 256 MVSSMLTEIVVISRSVMWTISKF-ITSGSWINWRSQFHACQVLFCC 122


>AV421977 
          Length = 535

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 329 KFCCSSRSPGMISFRPRSRTH 349
           + CCS R+ G   FR R RTH
Sbjct: 427 RVCCSGRACGRGRFRRRGRTH 365


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,442,269
Number of Sequences: 28460
Number of extensions: 63696
Number of successful extensions: 277
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of query: 358
length of database: 4,897,600
effective HSP length: 91
effective length of query: 267
effective length of database: 2,307,740
effective search space: 616166580
effective search space used: 616166580
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)