BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058b.2
(1371 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12784 similar to UP|Q850H6 (Q850H6) Gag-pol polyprotein (Fragm... 191 9e-49
AV780009 178 6e-45
BP041939 133 5e-40
BP075943 131 8e-31
BP066094 115 1e-28
BP063694 103 2e-22
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 100 1e-21
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 98 1e-20
AU088980 89 4e-18
BP043850 89 6e-18
BP084332 86 4e-17
BP033602 82 4e-16
BP057233 82 8e-16
AV766665 79 5e-15
TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragm... 77 2e-14
TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retro... 52 6e-14
AV424544 75 7e-14
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 74 1e-13
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 72 8e-13
AV766088 70 2e-12
>TC12784 similar to UP|Q850H6 (Q850H6) Gag-pol polyprotein (Fragment),
partial (15%)
Length = 460
Score = 191 bits (484), Expect = 9e-49
Identities = 104/145 (71%), Positives = 109/145 (74%), Gaps = 7/145 (4%)
Frame = +2
Query: 428 QDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQLHCRLGHPSLGVLRKLCPQ 487
QDLST RIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQLHCR GHPSLGVLRKLCP
Sbjct: 35 QDLSTPRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQLHCRFGHPSLGVLRKLCPP 214
Query: 488 LESLSNFSCESCQFA-KHHRSVYLPRLNKRAMSLFHIVHSDVWGPCP------VTSKLGY 540
LES+SNFSCESC RSVYLPRLNKRAMSLFHIVH G P + L +
Sbjct: 215 LESVSNFSCESCHVC*TSXRSVYLPRLNKRAMSLFHIVHL*CMGSMPCNF*IRLRVSLSH 394
Query: 541 KYFVTFVDDYSRATWLYLMKSRSEL 565
+ + RA WLYLMKSRSEL
Sbjct: 395 LWMIIL-----RAPWLYLMKSRSEL 454
Score = 32.0 bits (71), Expect = 0.68
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 341 DSGATNHMTGDSG 353
DSGATNHMTGDSG
Sbjct: 1 DSGATNHMTGDSG 39
>AV780009
Length = 529
Score = 178 bits (451), Expect = 6e-45
Identities = 82/163 (50%), Positives = 116/163 (70%), Gaps = 2/163 (1%)
Frame = -1
Query: 1190 EALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISW 1249
+A R+++Y+K AP +G+ + ++++A+SD+DWAG P R+S TGY +FLG +LISW
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 1250 KSKKQNVVARSSAEAEYRAMAQTTC--MWVGQILSEMGIERISPMKLWCDNQAALHISSN 1307
++KKQ V+RSS+EAEYRA+A T C W+ + + + P+ L+CDNQ+ALHI+ N
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 1308 PVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTK 1350
P FHERTKHIE+DCH +R KLQ LI + T QLAD+FTK
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTK 41
>BP041939
Length = 392
Score = 133 bits (334), Expect(2) = 5e-40
Identities = 70/105 (66%), Positives = 71/105 (66%)
Frame = +3
Query: 729 CFSPALGRYLVSADVTFFEDCSFSGWLPSSFPVCESEDTFLTYITTSPAPQTTTGTGFQF 788
CFSP LGRYLVSADVTFFEDCSFSGW PSSFP
Sbjct: 105 CFSPDLGRYLVSADVTFFEDCSFSGWSPSSFP---------------------------- 200
Query: 789 YEKTYSRRPKSSAPPPDTQSLPSIPLVSSDPHDNLDLPIALRKGK 833
TYSRRPKSSAPP DTQSLPS+PLVSSDPHDNLDLPIALRKGK
Sbjct: 201 ---TYSRRPKSSAPPSDTQSLPSLPLVSSDPHDNLDLPIALRKGK 326
Score = 50.1 bits (118), Expect(2) = 5e-40
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 705 VTKLDPKSLKCVFLGYSRTQKGYR 728
VTKLDPKSLKCVFLGYSRT KGYR
Sbjct: 34 VTKLDPKSLKCVFLGYSRT*KGYR 105
>BP075943
Length = 547
Score = 131 bits (329), Expect = 8e-31
Identities = 67/156 (42%), Positives = 101/156 (63%), Gaps = 2/156 (1%)
Frame = -3
Query: 1056 LVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYV 1115
L++YVDD+++ G+D I +K+ L +F+ KDLG KYFLG+E+ S +GI+++QRKY
Sbjct: 521 LLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYA 342
Query: 1116 LDMLAETGLMGSKPCETPMEPGMKL--TAEGVPFSDPQQYRRLVGKLNYLTVTRPDIAFP 1173
L +++++G G +P + T G P +D YRR+VG+L YL TRPDI F
Sbjct: 341 LQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFA 162
Query: 1174 VSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVY 1209
V+ +SQF+S+PTD H + L +KYL +PG G+ Y
Sbjct: 161 VNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFY 54
>BP066094
Length = 532
Score = 115 bits (287), Expect(2) = 1e-28
Identities = 56/149 (37%), Positives = 93/149 (61%)
Frame = +2
Query: 951 AKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKK 1010
+K ++R+LIS + ++ L Q++VK+AFL+G + +EVY+ QPPG + + +LKK
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1011 SLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDS 1070
SLYGLKQ+PR+W+ R S ++E R + D T+F K +++ +YVDDI+ ++
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1071 EGIGNLKTFLQMKFQTKDLGILKYFLGIE 1099
+Q +F+ + +G LKYFLGI+
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 30.0 bits (66), Expect(2) = 1e-28
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 935 YAQTYGVDYTDTFSPVAK 952
Y+Q G+DYT+TF+PVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>BP063694
Length = 511
Score = 103 bits (256), Expect = 2e-22
Identities = 60/169 (35%), Positives = 90/169 (52%), Gaps = 7/169 (4%)
Frame = -2
Query: 420 FFPDSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQL-HCRLGHPSL 478
F DS V Q+ T ++GR R GLY+L++ T + F+L H RLGH +
Sbjct: 507 FLDDSFVIQNRKTGAVLGRXRCDQGLYVLNQDSQALLTTSSPLPRASFELWHSRLGHVNF 328
Query: 479 GVLRKL----CPQLESL--SNFSCESCQFAKHHRSVYLPRLNKRAMSLFHIVHSDVWGPC 532
++++L C + S+ C SCQ AK R V+ NKRA ++ ++H D+ GP
Sbjct: 327 DIIKQLHKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDN-NKRASAVLDLIHCDLRGPS 151
Query: 533 PVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFN 581
PV S G+ YFV FVDD+SR TW Y +K +S+ + F + +F+
Sbjct: 150 PVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENRFS 4
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 100 bits (250), Expect = 1e-21
Identities = 44/94 (46%), Positives = 66/94 (69%)
Frame = +1
Query: 1276 WVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLIST 1335
W+ +L ++ + P ++CDN +A HI++NPVFHERTKHIE+DCH +RE++Q+ LI
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
Query: 1336 SYVRTGDQLADVFTKALNGVRNDFICNKLGMINI 1369
+ + + LAD++TKAL+ IC KLG+INI
Sbjct: 184 LPISSSEPLADIYTKALSPQNFHQICAKLGLINI 285
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 97.8 bits (242), Expect = 1e-20
Identities = 44/96 (45%), Positives = 65/96 (66%)
Frame = +1
Query: 1276 WVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLIST 1335
W+ IL ++ + ISP L+CD+Q+A HI++N VFHERTKH+++DCH +REKLQ L
Sbjct: 13 WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKLFHL 192
Query: 1336 SYVRTGDQLADVFTKALNGVRNDFICNKLGMINIYA 1371
+ + DQ AD+ TK L + +KLG++NIY+
Sbjct: 193 LPISSVDQTADILTKPLESGPFSHLVSKLGVLNIYS 300
>AU088980
Length = 360
Score = 89.4 bits (220), Expect = 4e-18
Identities = 48/106 (45%), Positives = 62/106 (58%)
Frame = +2
Query: 622 NGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLFPS 681
N + ERK+RH++ V +ALMF +PK W AV AAYLIN +PS +L G PY L +
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFL-NN 178
Query: 682 CSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGY 727
S L KVFG C+ + KLDP++ KCVFLG+ GY
Sbjct: 179 DSPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>BP043850
Length = 515
Score = 88.6 bits (218), Expect = 6e-18
Identities = 39/93 (41%), Positives = 64/93 (67%)
Frame = -1
Query: 1275 MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLIS 1334
+W+ +LSE+G + P L DN +A+ I++NPV+HE T+HIEVDCH +RE + +I+
Sbjct: 506 IWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRVIT 327
Query: 1335 TSYVRTGDQLADVFTKALNGVRNDFICNKLGMI 1367
+V T Q+AD+ TK+L R++F+ +KL ++
Sbjct: 326 LPHVSTSVQIADILTKSLTRQRHNFLVSKLMLV 228
>BP084332
Length = 368
Score = 85.9 bits (211), Expect = 4e-17
Identities = 47/113 (41%), Positives = 68/113 (59%), Gaps = 2/113 (1%)
Frame = +2
Query: 1254 QNVVARSSAEAEY--RAMAQTTCMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFH 1311
Q+ +A S+AEAEY A+ T +W+ L + I S + ++CDN AA+ +S NP+ H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILH 208
Query: 1312 ERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKL 1364
R KHIEV HFIR+ +Q+ ++ +V T Q AD+FTK L R +FI L
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>BP033602
Length = 533
Score = 82.4 bits (202), Expect = 4e-16
Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 20/158 (12%)
Frame = +3
Query: 414 LKCSVTFFPDSCVFQDLST-----------QRIIGRGRESDGLYLLDEGV-SKASTAYRT 461
LK FP+ V +LS Q++IG + DGLY ++ +KA+
Sbjct: 63 LKHCFWVFPEDSVIINLSFIQS*CCYSGT*QKMIGSAKMKDGLYYFEDTFRNKAAQGLCG 242
Query: 462 SSVSPFQ-----LHCRLGHPSLGVLRKLCPQL---ESLSNFSCESCQFAKHHRSVYLPRL 513
S + + H RLGHP+ LR L P L + S+ CESC AK+ R+ Y +
Sbjct: 243 MSCTSVRDQIMLWHNRLGHPNFQYLRHLFPDLFKNVNCSSLECESCVLAKNQRAPYYSQ- 419
Query: 514 NKRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYS 551
A F+++HSDVWGP +T++ G ++FVTF+DD++
Sbjct: 420 PYHASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>BP057233
Length = 473
Score = 81.6 bits (200), Expect = 8e-16
Identities = 37/75 (49%), Positives = 54/75 (71%)
Frame = -2
Query: 1294 LWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALN 1353
LWCDN +A ++SNPV H R+KHIE+D H+IR+++ QN + +YV T DQ+AD TK L+
Sbjct: 445 LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKPLS 266
Query: 1354 GVRNDFICNKLGMIN 1368
R + +KLG+I+
Sbjct: 265 HTRFSQLRDKLGVIH 221
>AV766665
Length = 601
Score = 79.0 bits (193), Expect = 5e-15
Identities = 38/75 (50%), Positives = 53/75 (70%)
Frame = +3
Query: 1194 RIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKK 1253
RI YLK RG +++ G ++ F+ AD+ GS +DR ST GY +FL GNL++W+SK+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 1254 QNVVARSSAEAEYRA 1268
QN++ARSS EAE RA
Sbjct: 552 QNIIARSSGEAELRA 596
Score = 30.8 bits (68), Expect = 1.5
Identities = 24/56 (42%), Positives = 28/56 (49%)
Frame = +1
Query: 1056 LVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQ 1111
L VYVD + I G D L+ L +F DL LKY IEVVY I IS+
Sbjct: 115 LCVYVDHMTIVGDDEVEKQILREKLAPQF---DLKKLKYISVIEVVYP**NIFISK 273
>TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(20%)
Length = 479
Score = 77.0 bits (188), Expect = 2e-14
Identities = 43/72 (59%), Positives = 47/72 (64%), Gaps = 2/72 (2%)
Frame = +3
Query: 1276 WVGQILSEMGIERISPMKLWCDNQAALHISSNP--VFHERTKHIEVDCHFIREKLQQNLI 1333
WVGQILSEMGIERISPM LWCDNQAALHISSNP + + + +REKLQQN
Sbjct: 3 WVGQILSEMGIERISPMPLWCDNQAALHISSNPSSLSMKELNILRWIAILLREKLQQNPY 182
Query: 1334 STSYVRTGDQLA 1345
GD LA
Sbjct: 183 LYFLC*NGDSLA 218
Score = 60.8 bits (146), Expect = 1e-09
Identities = 30/43 (69%), Positives = 34/43 (78%)
Frame = +1
Query: 1322 HFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKL 1364
+F+R + LISTSYVRT L DVFTKALNGVRNDFICN+L
Sbjct: 151 YFVRN-FNRTLISTSYVRTATHLPDVFTKALNGVRNDFICNQL 276
>TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 517
Score = 52.0 bits (123), Expect(2) = 6e-14
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = -2
Query: 1297 DNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALNGVR 1356
DN+AALH+ F R KHIE+D HF+ ++ IST +V + DQL DVFTK+ G
Sbjct: 354 DNKAALHMPKI*-FSMRAKHIEIDFHFL*DRRLYLDISTRFVNSNDQLTDVFTKSWRGP* 178
Query: 1357 NDFI 1360
++I
Sbjct: 177 GNYI 166
Score = 43.5 bits (101), Expect(2) = 6e-14
Identities = 21/32 (65%), Positives = 24/32 (74%)
Frame = -1
Query: 1242 LGGNLISWKSKKQNVVARSSAEAEYRAMAQTT 1273
L NLISWKSK+ +VARS AEAE+R MA T
Sbjct: 517 LSDNLISWKSKETIIVARSRAEAEFRVMATAT 422
>AV424544
Length = 276
Score = 75.1 bits (183), Expect = 7e-14
Identities = 37/90 (41%), Positives = 57/90 (63%)
Frame = +3
Query: 1025 RFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKF 1084
+ S + G +S DH++F K + +++VYVDD+++ G+D I +K L ++F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1085 QTKDLGILKYFLGIEVVYSKNGIMISQRKY 1114
+ KDLG LKYFLG+EV S G+ +SQRKY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 74.3 bits (181), Expect = 1e-13
Identities = 30/79 (37%), Positives = 57/79 (71%)
Frame = +3
Query: 1275 MWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLIS 1334
+W+ L+++ I + + ++CDN++ALH+++N VFH+RT++IE+DCH + K+ ++
Sbjct: 27 LWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGILH 206
Query: 1335 TSYVRTGDQLADVFTKALN 1353
+V + DQ+ADVFTK ++
Sbjct: 207 LLHVPSSDQVADVFTKTIS 263
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 71.6 bits (174), Expect = 8e-13
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Frame = +2
Query: 1026 FSDVVMEFGLRRSESDHTVFFKQ-TNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKF 1084
F +M G R SDH + K+ + I+L++YVDD+++ G + + + LK L +F
Sbjct: 2 FDSFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 181
Query: 1085 QTKDLGILKYFLGIEVVYSKNG--IMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTA 1142
KDLG LG+++ + I +SQ+ Y+ +L + P TP+ KL++
Sbjct: 182 DMKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSS 361
Query: 1143 EGVPFSDPQQ-------YRRLVGKLNY 1162
+P S+ ++ Y VG L Y
Sbjct: 362 SMIPSSEAERMEMSRVPYASAVGSLMY 442
>AV766088
Length = 501
Score = 70.1 bits (170), Expect = 2e-12
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = -3
Query: 470 HCRLGHPSLGVLRKLCPQL---ESLSNFS--CESCQFAKHHRSVYLPRLNKRAMSLFHIV 524
H RLGHPS LR L L N+S CESC F KH R ++ N M F I+
Sbjct: 301 HSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSNNVTVMP-FDIL 125
Query: 525 HSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELF 566
HSD+W PV S G++++V F+DD++ W + + ++S++F
Sbjct: 124 HSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVF 2
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,617,281
Number of Sequences: 28460
Number of extensions: 394538
Number of successful extensions: 3137
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 2695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2986
length of query: 1371
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1270
effective length of database: 2,023,140
effective search space: 2569387800
effective search space used: 2569387800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0058b.2