BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058a.4
(457 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP046863 39 0.002
BP054462 32 0.17
TC8213 30 0.83
TC8212 30 0.83
TC15551 similar to UP|XTH9_ARATH (Q8LDW9) Xyloglucan endotransgl... 28 3.2
TC9956 similar to GB|AAA53140.1|550452|GMU08469 3-methylcrotonyl... 28 3.2
BP054550 28 4.1
AV422360 27 5.4
AV422962 27 7.0
TC11740 similar to GB|AAO63405.1|28950963|BT005341 At5g08170 {Ar... 27 7.0
BP057320 27 7.0
AV779085 27 7.0
TC15356 weakly similar to UP|Q7QCA3 (Q7QCA3) AgCP1462 (Fragment)... 27 9.2
TC18374 similar to UP|Q9FIX9 (Q9FIX9) Sucrose transporter protei... 27 9.2
>BP046863
Length = 580
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/94 (32%), Positives = 46/94 (47%)
Frame = +1
Query: 218 VLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPKSRPLIEVPKQKSNFDSHG 277
+LEL NLLKAQD + AQA + + +D G+W + Q K + L + QK + +G
Sbjct: 298 LLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQRKNQKLSPRFYG 477
Query: 278 LLKVVMTIGMEEYELKKKALSVPQQNQPLFILFL 311
KV+ + Y L L + P+F L L
Sbjct: 478 PFKVLERVVQVAY*LD---LXSESRVHPVFHLSL 570
>BP054462
Length = 422
Score = 32.3 bits (72), Expect = 0.17
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +1
Query: 215 EEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPKSRPLIEVPKQKSNFD 274
+E + +L +NLLK+QD++ A + + +D G + Q + R L + +K +
Sbjct: 133 DELLSDLRANLLKSQDMMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPR 312
Query: 275 SHGLLKVVMTIGMEEYELKKKALS 298
+G +V IG Y L+ A S
Sbjct: 313 YYGPYPIVAKIGAVAYRLELPAHS 384
>TC8213
Length = 935
Score = 30.0 bits (66), Expect = 0.83
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 402 SILEDKDVLRGGVMIRTQILVALVLLRYL 430
SILEDKDV +G VM+ IL L+ L +L
Sbjct: 433 SILEDKDVFKGMVMVEGCILNGLL*LHHL 519
>TC8212
Length = 555
Score = 30.0 bits (66), Expect = 0.83
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 402 SILEDKDVLRGGVMIRTQILVALVLLRYL 430
SILEDKDV +G VM+ IL L+ L +L
Sbjct: 257 SILEDKDVFKGMVMVEGCILNGLL*LHHL 343
>TC15551 similar to UP|XTH9_ARATH (Q8LDW9) Xyloglucan
endotransglucosylase/hydrolase protein 9 precursor
(At-XTH9) (XTH-9) , partial (49%)
Length = 596
Score = 28.1 bits (61), Expect = 3.2
Identities = 19/56 (33%), Positives = 29/56 (50%)
Frame = +1
Query: 207 MLLASWLEEEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPKSRP 262
++L+ W +LELL LLS +R Q ++ ++ WE PQ L +SRP
Sbjct: 325 LILSLW--RVTLLELL--------LLSICHQREQITMNSISSFWETPQVNLTQSRP 462
>TC9956 similar to GB|AAA53140.1|550452|GMU08469 3-methylcrotonyl-CoA
carboxylase, biotin-carrier domain {Glycine max;} ,
partial (9%)
Length = 629
Score = 28.1 bits (61), Expect = 3.2
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = -2
Query: 269 QKSNFDSHGLLKVVMTIGMEEYELKKKALSVPQQNQPLFILFLEGNEL 316
QKSNF L+ +I + +++ K + P+ +QP +IL L N L
Sbjct: 547 QKSNFIQKKALRTPFSIRIHIHKVLTKHPNQPKVDQPYYILSLLSNPL 404
>BP054550
Length = 417
Score = 27.7 bits (60), Expect = 4.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 345 GGCSDLTATTWPTSFQQWDPGGGFYCPYPDNAGKWIKGRLLQDTW 389
G C D P+ + +WD PYP+ A +WI R+L ++
Sbjct: 331 GPCED------PSQYIRWDG-----VPYPEAANRWIAHRILHGSF 230
>AV422360
Length = 463
Score = 27.3 bits (59), Expect = 5.4
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = +2
Query: 115 LQHPLPVSQVDFIHLTKMYVVLQAWIQHWEFKDFVNK 151
LQ P+ S IH+ K Q W+ H EF D +N+
Sbjct: 23 LQFPILFSPT--IHMNKPLFQFQFWVLHSEFADSLNR 127
>AV422962
Length = 382
Score = 26.9 bits (58), Expect = 7.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 306 LFILFLEGNELLVQIPQVMTA 326
LF+LFLE L+V+IPQ +A
Sbjct: 223 LFLLFLEATMLIVRIPQSSSA 285
>TC11740 similar to GB|AAO63405.1|28950963|BT005341 At5g08170 {Arabidopsis
thaliana;}, partial (46%)
Length = 576
Score = 26.9 bits (58), Expect = 7.0
Identities = 15/37 (40%), Positives = 19/37 (50%)
Frame = +2
Query: 247 AGHWENPQSQLPKSRPLIEVPKQKSNFDSHGLLKVVM 283
+ WEN +SQLP +IE+ S F G VVM
Sbjct: 26 SAQWENARSQLPDHIRVIEISCNDSWFRDTGPTFVVM 136
>BP057320
Length = 433
Score = 26.9 bits (58), Expect = 7.0
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = -2
Query: 399 FSTSILEDKDVLRGGVMIRTQILVALVLLRYL 430
F ILEDKDV +G VM+ IL + L L
Sbjct: 279 FVQLILEDKDVFKGMVMVEGCILNGFLKLHLL 184
>AV779085
Length = 508
Score = 26.9 bits (58), Expect = 7.0
Identities = 14/37 (37%), Positives = 19/37 (50%)
Frame = -3
Query: 420 ILVALVLLRYLLGRVKGEIKLIPTSDNCQADVTVSSG 456
I++AL LL LGR+ +L+P Q D T G
Sbjct: 365 IILALPLLGITLGRLVQNFELLPPPGQSQLDTTEKGG 255
>TC15356 weakly similar to UP|Q7QCA3 (Q7QCA3) AgCP1462 (Fragment), partial
(5%)
Length = 806
Score = 26.6 bits (57), Expect = 9.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 339 TDTWNPGGCSDLTATTWP 356
T W+P GC +TATT P
Sbjct: 116 TSEWSPDGCYFMTATTAP 169
>TC18374 similar to UP|Q9FIX9 (Q9FIX9) Sucrose transporter protein, partial
(17%)
Length = 330
Score = 26.6 bits (57), Expect = 9.2
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +2
Query: 268 KQKSNFDSHGLLKVVMTIGMEEYELKKKALSVPQQNQPL 306
+ K N DSHGLL +V+ G E ++ + L Q+ PL
Sbjct: 26 RSKENADSHGLL-LVLHGGRERARIRGRRLQRSPQDLPL 139
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,824,404
Number of Sequences: 28460
Number of extensions: 135464
Number of successful extensions: 594
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of query: 457
length of database: 4,897,600
effective HSP length: 93
effective length of query: 364
effective length of database: 2,250,820
effective search space: 819298480
effective search space used: 819298480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0058a.4