BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.8
(558 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427862 215 2e-56
AV766181 122 1e-28
TC20229 33 0.093
TC16882 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial ... 32 0.27
BP056309 31 0.46
TC19264 homologue to UP|O24293 (O24293) Chloroplast inner envelo... 31 0.46
TC10788 weakly similar to UP|Q8YG29 (Q8YG29) Cytochrome C-type b... 31 0.60
BP063672 31 0.60
BP068574 30 1.0
TC17733 similar to UP|Q7XA63 (Q7XA63) At5g19860, partial (63%) 30 1.3
TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE... 29 1.8
TC12781 weakly similar to UP|Q940Z5 (Q940Z5) AT5g39050/MXF12_60,... 28 3.0
AV769823 28 3.0
BP033767 28 3.0
TC12789 similar to UP|Q9AT08 (Q9AT08) ADP-glucose pyrophosphoryl... 28 3.0
AV429033 28 3.0
AV780663 28 3.9
TC8484 similar to UP|Q9XGP1 (Q9XGP1) ESTs AU070372(S13446), part... 28 3.9
AV416351 28 3.9
TC9027 weakly similar to UP|AAQ82447 (AAQ82447) SufB, partial (51%) 28 3.9
>AV427862
Length = 314
Score = 215 bits (547), Expect = 2e-56
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 181 GKHLQSINFDELFGSLYDYYSQKQESKIQCIIHYFQRITSNMPQGVVSFERKVLPLEDDY 240
GKHLQSINFDELFGSLYDYYSQKQESKIQCIIHYFQRITSNMPQGVVSFERKVLPLEDDY
Sbjct: 3 GKHLQSINFDELFGSLYDYYSQKQESKIQCIIHYFQRITSNMPQGVVSFERKVLPLEDDY 182
Query: 241 IHISYPNADVWSTSIIPLCRFEVHSSGLIEDQLSEAVEVDFANE 284
IHISYPNADVWSTSIIPLCRFEVHSSGLIEDQLSEAVEVDFANE
Sbjct: 183 IHISYPNADVWSTSIIPLCRFEVHSSGLIEDQLSEAVEVDFANE 314
>AV766181
Length = 410
Score = 122 bits (307), Expect = 1e-28
Identities = 55/56 (98%), Positives = 55/56 (98%)
Frame = -1
Query: 503 KVAHWILSHRWTVGDLWNMLTEYSMNRSKGETNVGFLQWVLPSMYDDAGMDFSNIP 558
KVAHWILSHRWTVGDLWNMLTEYSMNRSKG TNVGFLQWVLPSMYDDAGMDFSNIP
Sbjct: 410 KVAHWILSHRWTVGDLWNMLTEYSMNRSKGGTNVGFLQWVLPSMYDDAGMDFSNIP 243
>TC20229
Length = 666
Score = 33.5 bits (75), Expect = 0.093
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Frame = +1
Query: 124 AHYQNADRVLDEDGGLVRTGLRLLDS-----QEPGIVFLSQELIAALLVCSFFCLFP--- 175
A + ADR+ GG V GLR+ D+ Q IV ++++ +A + V +F +
Sbjct: 184 ALFSVADRLKKLYGGKVHVGLRIPDADSASRQTIDIVLVTKQELAVISVKNFSGILAVHR 363
Query: 176 ----VNERYGKHLQSINFDELFGSLYDYYSQKQESKIQCIIHYFQRITSNMPQGVVSFER 231
V+E+ GKH Q + D + ++ ++ + Y ++ ++P+G +S+ +
Sbjct: 364 DGSWVSEKPGKHKQETHPDPV---------EEARKQVSILESYLKQRGVDLPKGYISY-K 513
Query: 232 KVLP 235
+LP
Sbjct: 514 VILP 525
>TC16882 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (96%)
Length = 694
Score = 32.0 bits (71), Expect = 0.27
Identities = 21/48 (43%), Positives = 24/48 (49%), Gaps = 8/48 (16%)
Frame = -1
Query: 47 FLLSVLAFPSRRITPATNCS--------APFPTSEPPFPSLPNLYPLP 86
FLLS+ AFP+ T A S AP PT FP+L NL LP
Sbjct: 334 FLLSLAAFPANSKTSAARYSSTAERYTGAPAPTRSAYFPALRNLAILP 191
>BP056309
Length = 526
Score = 31.2 bits (69), Expect = 0.46
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 66 SAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKWFQEVVPALGILLLRL 118
S P P SE FP L + PL LQT P+ T+ + + F ++PA L L
Sbjct: 102 SLPLP-SETFFPDLQHADPL-LQTPNPTPKTLPQPTQTFPSIIPAKHFLTTTL 254
>TC19264 homologue to UP|O24293 (O24293) Chloroplast inner envelope protein,
110 kDa (IEP110) precursor, partial (10%)
Length = 431
Score = 31.2 bits (69), Expect = 0.46
Identities = 24/61 (39%), Positives = 27/61 (43%)
Frame = +3
Query: 57 RRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKWFQEVVPALGILLL 116
RR T P P S PPFPS TPSS T+ FQ + P+L LLL
Sbjct: 93 RRFTGNHEPVHPHPFSHPPFPS------------TPSSLTLPHPTPSFQSLPPSL--LLL 230
Query: 117 R 117
R
Sbjct: 231 R 233
>TC10788 weakly similar to UP|Q8YG29 (Q8YG29) Cytochrome C-type biogenesis
protein, partial (25%)
Length = 656
Score = 30.8 bits (68), Expect = 0.60
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 121 LLEAHYQNADRVLDEDGGLVRTGLRLLDSQEPGIVFLSQELIAALLV 167
+LE H N + GGLV G + S PG+ F+ +LI ++V
Sbjct: 474 MLEKHRSNPSKAKFRLGGLVLEGSVVYPSSSPGVEFVVTDLITDIVV 614
>BP063672
Length = 528
Score = 30.8 bits (68), Expect = 0.60
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 55 PSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESR 101
P RR FP S P+P +PN + QT TP+++T + R
Sbjct: 14 PLRRFFLLCQFLLNFP*SPSPYPKMPNSHSST*QTTTPTTTTTQTLR 154
>BP068574
Length = 569
Score = 30.0 bits (66), Expect = 1.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 507 WILSHRWTVGDLWNMLTEYSMNRSKGETNVGFLQWVLPSMY-DDAGMDFSN 556
WI S WT+G L + +E S N +G+ G L +LP + +AG N
Sbjct: 442 WIQSDEWTIGGLLTLYSELSRNLGEGK---GDLLVLLPEVLGSEAGTSMLN 299
>TC17733 similar to UP|Q7XA63 (Q7XA63) At5g19860, partial (63%)
Length = 711
Score = 29.6 bits (65), Expect = 1.3
Identities = 16/36 (44%), Positives = 21/36 (57%)
Frame = +2
Query: 37 DSSISTPRDAFLLSVLAFPSRRITPATNCSAPFPTS 72
DSS PR A S F +RR +P ++ +AP PTS
Sbjct: 254 DSSSIWPRRATSSSTTWFTTRRPSPVSSATAPSPTS 361
>TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE11_17
{Arabidopsis thaliana;}, partial (24%)
Length = 585
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 60 TPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTP 92
+P + S+P+P+S PP P P P PL++ +P
Sbjct: 159 SPPASPSSPYPSSSPPQPHPP---PPPLESPSP 70
>TC12781 weakly similar to UP|Q940Z5 (Q940Z5) AT5g39050/MXF12_60, partial
(12%)
Length = 463
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Frame = -3
Query: 46 AFLLSVLAFPSRRITPA---------TNCSAPFPTSEPPFPSLPNLYPL 85
A L +L +P +PA T S PTS PPFPSL + P+
Sbjct: 266 ALL*GLLCYPQSEHSPARKKVPNRPITCLSRTNPTSTPPFPSLLSAMPI 120
>AV769823
Length = 306
Score = 28.5 bits (62), Expect = 3.0
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +3
Query: 74 PPFPSLPNLYPLPLQ 88
P FP LPNLYP+ LQ
Sbjct: 57 PSFPILPNLYPITLQ 101
>BP033767
Length = 541
Score = 28.5 bits (62), Expect = 3.0
Identities = 23/75 (30%), Positives = 30/75 (39%), Gaps = 4/75 (5%)
Frame = +3
Query: 26 RENGKQTRLEIDS----SISTPRDAFLLSVLAFPSRRITPATNCSAPFPTSEPPFPSLPN 81
RE K T + + + +S LLS +RRI P S+PP P P+
Sbjct: 30 RERNKSTTMSMSTFTCLHLSHLAPLQLLSSEPIINRRILHQPFTQGSLPPSQPPNPPPPS 209
Query: 82 LYPLPLQTDTPSSST 96
P P P SST
Sbjct: 210 PSPSPPNPKYPFSST 254
>TC12789 similar to UP|Q9AT08 (Q9AT08) ADP-glucose pyrophosphorylase
(Glucose-1-phosphate adenylyltransferase) (ADP-glucose
synthase) , partial (7%)
Length = 601
Score = 28.5 bits (62), Expect = 3.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -1
Query: 49 LSVLAFPSRRITPATNCSAPF-PTSEPP--FPSLPNLYPLPLQTDTPSSSTIEES 100
+ + F + +TP CS+ F P P F SLP L P P+ P + T+EES
Sbjct: 520 MDICCFLTFLVTPLPRCSSSFLPMISPSRNFTSLPFLQPRPV---GPRNWTLEES 365
>AV429033
Length = 557
Score = 28.5 bits (62), Expect = 3.0
Identities = 19/56 (33%), Positives = 23/56 (40%), Gaps = 1/56 (1%)
Frame = +3
Query: 66 SAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESR-KWFQEVVPALGILLLRLPS 120
SAP PT+ PP P P + P+ S S W PA+ RLPS
Sbjct: 123 SAPPPTTFPPLPRKTQSLPFSPSAEAPTFSPAPASTPSWTASTAPAVS----RLPS 278
>AV780663
Length = 568
Score = 28.1 bits (61), Expect = 3.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 55 PSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSS 94
P + P + APFP PP P P P PL TP++
Sbjct: 56 PLPLLLPLASSHAPFPPLPPPPPRPP---PPPLDPSTPTA 166
>TC8484 similar to UP|Q9XGP1 (Q9XGP1) ESTs AU070372(S13446), partial
(76%)
Length = 1121
Score = 28.1 bits (61), Expect = 3.9
Identities = 24/72 (33%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Frame = +1
Query: 31 QTRLEIDSSISTPRDAFLLSVLAFPSRRITPATNCSAPFPTS-----EPPFPSLPNLYPL 85
Q+++ I SS P FL S+ + P T + +P+P S PP S PN
Sbjct: 10 QSQISITSSTQNP---FLHSLSSAPFTH-TL*WHLQSPYPGSFLPPPSPPLSSHPNPSSP 177
Query: 86 PLQTDTPSSSTI 97
P +PSSST+
Sbjct: 178PNSPPSPSSSTV 213
>AV416351
Length = 428
Score = 28.1 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 55 PSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESR 101
P R+I + S+P P + P S P P P PSSS+ E +
Sbjct: 9 PPRKIVSTSLPSSPLPKAPPFSSSSPPRNPRPPPPPPPSSSSSPEKK 149
>TC9027 weakly similar to UP|AAQ82447 (AAQ82447) SufB, partial (51%)
Length = 1016
Score = 28.1 bits (61), Expect = 3.9
Identities = 21/44 (47%), Positives = 22/44 (49%), Gaps = 4/44 (9%)
Frame = +3
Query: 54 FPSR-RITPATNC--SAPFPTSEPPFPSLPNLY-PLPLQTDTPS 93
FPS R P T+ S P P PP P PNL P P QT PS
Sbjct: 54 FPSEPRRLPLTSSTHSRPQPPQTPPPPKPPNLLPPPPPQTPPPS 185
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,757,145
Number of Sequences: 28460
Number of extensions: 164659
Number of successful extensions: 1239
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of query: 558
length of database: 4,897,600
effective HSP length: 95
effective length of query: 463
effective length of database: 2,193,900
effective search space: 1015775700
effective search space used: 1015775700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0057b.8