BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.6
(396 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV406443 277 2e-75
TC15492 263 5e-71
AU251642 36 0.010
TC19339 30 0.92
TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like pr... 29 1.2
TC11559 similar to UP|Q9SXT3 (Q9SXT3) Multidrug resistance prote... 29 1.6
TC9939 homologue to UP|GSA_SOYBN (P45621) Glutamate-1-semialdehy... 28 2.0
TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding l... 28 3.5
CB828788 27 4.5
BF177504 27 4.5
TC18282 weakly similar to UP|O48524 (O48524) At2g42160 protein, ... 27 5.9
AW720269 27 5.9
AV407242 27 7.8
TC11003 similar to UP|MYOP_MESCR (O49071) Inositol-1(or 4)-monop... 27 7.8
>AV406443
Length = 417
Score = 277 bits (709), Expect = 2e-75
Identities = 137/138 (99%), Positives = 138/138 (99%)
Frame = +3
Query: 11 KILLAKPGLVTGGPVAGKFGRGAAGEDDSAQHRSRLPSVASLNLLSDSWDFHIDRFLPFL 70
+ILLAKPGLVTGGPVAGKFGRGAAGEDDSAQHRSRLPSVASLNLLSDSWDFHIDRFLPFL
Sbjct: 3 EILLAKPGLVTGGPVAGKFGRGAAGEDDSAQHRSRLPSVASLNLLSDSWDFHIDRFLPFL 182
Query: 71 TENTDFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEP 130
TENTDFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEP
Sbjct: 183 TENTDFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEP 362
Query: 131 RISAERIILLDTQPVFSA 148
RISAERIILLDTQPVFSA
Sbjct: 363 RISAERIILLDTQPVFSA 416
>TC15492
Length = 564
Score = 263 bits (671), Expect = 5e-71
Identities = 127/128 (99%), Positives = 127/128 (99%)
Frame = +3
Query: 269 KNFVQLRKTLIQYFKPSSFVREHAEHKPEEHISSSMVHDSPMDSNVPSLFAIPFKKKDEN 328
KNFVQLRKTLIQYFKPSSFVREHAEHKPEEHISSSMVHDSPMDSNVPSLFAIPFKKKDEN
Sbjct: 3 KNFVQLRKTLIQYFKPSSFVREHAEHKPEEHISSSMVHDSPMDSNVPSLFAIPFKKKDEN 182
Query: 329 PRAQHGSYISALWKLRDQILSMKSPSFTRPVSEREWLKNSAKIWEQVKNSPTMLEYCRTL 388
PRAQHGSYISALW LRDQILSMKSPSFTRPVSEREWLKNSAKIWEQVKNSPTMLEYCRTL
Sbjct: 183 PRAQHGSYISALWNLRDQILSMKSPSFTRPVSEREWLKNSAKIWEQVKNSPTMLEYCRTL 362
Query: 389 QQSGMFRR 396
QQSGMFRR
Sbjct: 363 QQSGMFRR 386
>AU251642
Length = 427
Score = 36.2 bits (82), Expect = 0.010
Identities = 16/53 (30%), Positives = 25/53 (46%)
Frame = +1
Query: 254 PVFVHTKLHDQEFTPKNFVQLRKTLIQYFKPSSFVREHAEHKPEEHISSSMVH 306
P+F+ HD ++ Q +TL+ F ++ EHKP+ SSS H
Sbjct: 16 PIFLFLYFHDTTHIVTHYYQCNRTLLSVFFFQFIYKQQTEHKPQRSFSSSKPH 174
>TC19339
Length = 427
Score = 29.6 bits (65), Expect = 0.92
Identities = 10/19 (52%), Positives = 16/19 (83%)
Frame = +1
Query: 78 VIGVIGPPGVGKSTIMNEL 96
++G+ GPPG GKST+ +E+
Sbjct: 319 LVGLAGPPGAGKSTVAHEV 375
>TC12516 similar to UP|Q9M5V7 (Q9M5V7) Disease resistance-like protein
(Fragment), partial (36%)
Length = 859
Score = 29.3 bits (64), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 72 ENTDFTVIGVIGPPGVGKSTIMNELY 97
E+ D VIG+ G G+GK+TI E++
Sbjct: 597 ESKDVRVIGIWGMGGIGKTTIAEEIF 674
>TC11559 similar to UP|Q9SXT3 (Q9SXT3) Multidrug resistance protein
(Fragment), partial (41%)
Length = 460
Score = 28.9 bits (63), Expect = 1.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 78 VIGVIGPPGVGKSTIMNEL 96
++GVIGP G GKST++ L
Sbjct: 174 IVGVIGPSGSGKSTLLRAL 230
>TC9939 homologue to UP|GSA_SOYBN (P45621) Glutamate-1-semialdehyde
2,1-aminomutase, chloroplast precursor (GSA)
(Glutamate-1-semialdehyde aminotransferase) (GSA-AT) ,
partial (52%)
Length = 903
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 294 HKPEEHISSSMVHDSPMDSNVPSLFAIPFKKKDENPRAQHGSYISALWKL 343
H PE +++S ++HD ++ +PS + P PR S+ ++L KL
Sbjct: 108 HSPEPYLASLLIHDDQLEL-LPSQWPFPL-----TPRPAPNSFFASLKKL 239
>TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding
like-protein, partial (16%)
Length = 779
Score = 27.7 bits (60), Expect = 3.5
Identities = 33/144 (22%), Positives = 54/144 (36%), Gaps = 11/144 (7%)
Frame = +2
Query: 218 KHGIPDPSLLASSH----SQSSSSGHEKDNKLSGREYMATPVFVHTKLHDQEFTPKNFVQ 273
KHGI D SSH SS H + + M+ H++ H E + ++ +
Sbjct: 206 KHGISDDEHQHSSHHHKYDSSSDEKHRSSRRRQREDSMSDHEHKHSRRHKHETSSEDERR 385
Query: 274 LRKTLIQYFKPSSFVREHAEHKPEEHIS-SSMVHDSPMDSNVPSLFAIPFKKKDENP--- 329
R H +HK H+ S + + + + S A ++ P
Sbjct: 386 HRS-------------RHTKHKSRSHVERESELEEGEVMKSDKSQQASEVERASREPSAS 526
Query: 330 --RAQHGSYISALW-KLRDQILSM 350
A HG IS + +LR +I +M
Sbjct: 527 LSNANHGPEISDVSDELRAKIRAM 598
>CB828788
Length = 448
Score = 27.3 bits (59), Expect = 4.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 79 IGVIGPPGVGKSTIMNEL 96
+ ++G P VGKST+MN L
Sbjct: 140 LAIVGRPNVGKSTLMNTL 193
>BF177504
Length = 509
Score = 27.3 bits (59), Expect = 4.5
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +1
Query: 213 TVDLLK--HGIPDPSLLASSHSQSSSSGHEKDNKLSGR 248
T+D + +GI D ++L ++ QSSS G+ K N+ SGR
Sbjct: 388 TIDKMSDSNGIKDGTVLPMAYEQSSS-GNSKKNRKSGR 498
>TC18282 weakly similar to UP|O48524 (O48524) At2g42160 protein, partial
(5%)
Length = 573
Score = 26.9 bits (58), Expect = 5.9
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 213 TVDLLK--HGIPDPSLLASSHSQSSSSGHEKDNKLSGR 248
T+D + +GI D ++L ++ QSSS G+ K N+ SGR
Sbjct: 120 TIDKMSDSNGIKDGTVLPVAYEQSSS-GNSKKNRKSGR 230
>AW720269
Length = 524
Score = 26.9 bits (58), Expect = 5.9
Identities = 9/21 (42%), Positives = 15/21 (70%)
Frame = +3
Query: 78 VIGVIGPPGVGKSTIMNELYG 98
++ V+GP G GKST++ + G
Sbjct: 93 IVAVVGPSGTGKSTLLRIIAG 155
>AV407242
Length = 320
Score = 26.6 bits (57), Expect = 7.8
Identities = 14/37 (37%), Positives = 25/37 (66%), Gaps = 2/37 (5%)
Frame = +1
Query: 91 TIMNELYG--FDSSSPGMLPPFATQSEENRAMARHCS 125
TI+N+ F+S++P LPP ++ ++RA+A HC+
Sbjct: 121 TILNQF*NRFFNSTAPP-LPPHSSTMMDHRAVATHCT 228
>TC11003 similar to UP|MYOP_MESCR (O49071) Inositol-1(or 4)-monophosphatase
(IMPase) (IMP) (Inositol monophosphatase) , partial
(54%)
Length = 553
Score = 26.6 bits (57), Expect = 7.8
Identities = 21/85 (24%), Positives = 37/85 (42%)
Frame = +3
Query: 312 SNVPSLFAIPFKKKDENPRAQHGSYISALWKLRDQILSMKSPSFTRPVSEREWLKNSAKI 371
S+ PS + ++ R H S++ + + L K + +S +EWL S K+
Sbjct: 48 SSAPSFLSQQWRLTKNQKR--HSSHLPSTLLRKLVSLFEKGSTRQNTLSTKEWLIWSLKL 221
Query: 372 WEQVKNSPTMLEYCRTLQQSGMFRR 396
+ VKNS + T S + R+
Sbjct: 222 IKHVKNSSLLSSSSNTRLTSSLGRK 296
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,862,959
Number of Sequences: 28460
Number of extensions: 98559
Number of successful extensions: 539
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of query: 396
length of database: 4,897,600
effective HSP length: 92
effective length of query: 304
effective length of database: 2,279,280
effective search space: 692901120
effective search space used: 692901120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0057b.6