BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.10
(306 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10259 similar to UP|O80853 (O80853) At2g30880 protein, partial... 153 4e-38
TC8791 weakly similar to GB|BAC65899.1|29027763|AP003846 hydroxy... 35 0.016
AV408585 34 0.035
TC18493 similar to UP|Q948T9 (Q948T9) Respiratory burst oxidase ... 33 0.079
AW719204 29 0.87
TC9298 UP|CAE02644 (CAE02644) Ornithine decarboxylase , complete 29 1.1
TC14651 weakly similar to UP|Q42779 (Q42779) Alpha-carboxyltrans... 28 1.9
BI418174 28 1.9
TC10133 similar to UP|Q9LSS5 (Q9LSS5) Myosin heavy chain-like, p... 28 2.5
TC16620 weakly similar to UP|Q9FN67 (Q9FN67) Gb|AAD56319.1, part... 27 3.3
BI418269 27 4.3
TC19183 27 4.3
TC13626 27 5.6
TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%) 26 7.4
CB827028 26 9.6
BP038245 26 9.6
TC11535 similar to AAS10009 (AAS10009) MYB transcription factor,... 26 9.6
>TC10259 similar to UP|O80853 (O80853) At2g30880 protein, partial (11%)
Length = 567
Score = 153 bits (386), Expect = 4e-38
Identities = 78/98 (79%), Positives = 86/98 (87%)
Frame = +1
Query: 209 EVFEKTESCSDTKHVDLTEENVDKACLSVSRSVPDPAAAECVVQMPTDQVIIQPVGDNEW 268
+VFEK ESCSDTKHVD TEENVDKACLSVSR++P PA E VV M TDQV IQPVGDNEW
Sbjct: 1 QVFEKKESCSDTKHVDPTEENVDKACLSVSRAIPAPA--ENVVHMATDQVNIQPVGDNEW 174
Query: 269 SDIQATEARVADVREVASESEVSSLDIPVISQQGTNHQ 306
SDIQATEAR+ADVREVA+E++ +S DIPVISQ GTNHQ
Sbjct: 175 SDIQATEARIADVREVAAETDGNSTDIPVISQPGTNHQ 288
>TC8791 weakly similar to GB|BAC65899.1|29027763|AP003846
hydroxyproline-rich glycoprotein-like {Oryza sativa
(japonica cultivar-group);} , partial (23%)
Length = 1256
Score = 35.0 bits (79), Expect = 0.016
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Frame = +2
Query: 41 FARDLRTRDSTIRD-IAEKLSETAEA-AEAAASAAHTIDEQWRNACEEIESLKKDSEKQL 98
FA + + +T+ D K+ + +A AE + A T++ +W+ E L+K +++
Sbjct: 107 FAMEDKDSVATLMDSTTSKIQQLQKAFAELESYRAVTLNLKWKELEEHFHGLEKSLKRRF 286
Query: 99 ELSAQKLKEYEVKIISLSKEKEQLSKQREAATQEANMWRSELGKARESGVILEGALARAE 158
+ KE+E K K +E L K+ A + + L + R++ A+ A
Sbjct: 287 HELEDQEKEFESK---TRKSRELLEKREAAVFSKEQVSLQRLQEKRDAAAF---AIVNAR 448
Query: 159 EKVRVAEANAEAKIKEAVQG 178
EK R + A + QG
Sbjct: 449 EKHRKVSSKDLAFVSSGGQG 508
>AV408585
Length = 430
Score = 33.9 bits (76), Expect = 0.035
Identities = 38/153 (24%), Positives = 66/153 (42%), Gaps = 8/153 (5%)
Frame = +2
Query: 45 LRTRDSTIRDIAEKLSETAEAAEAAASAAHTIDEQWRNACEEIESLKKDSEKQLELSAQK 104
L+ +D I + + E ++ A S + Q R+ EE + L K
Sbjct: 2 LKEKDEIINQVMAEGEELSKKQAAQESTIRKLRAQIRDFEEEKKGL-----------TTK 148
Query: 105 LKEYEVKIISLSKEKEQLSKQREAATQEANMWRSELGKARESGVILEGALARAEEKVRVA 164
L+ E K+ S+ ++K K + ++ ++EL +E ALA A+E +A
Sbjct: 149 LQIEENKVESIKRDKTATEKLLQETIEKH---QNELAAQKE---YYTNALAAAKEAEALA 310
Query: 165 EANA--------EAKIKEAVQGESAAVSEKQEL 189
EA A E++++EA + ES V +EL
Sbjct: 311 EARANNEARTELESRLREAEERESMLVQTLEEL 409
>TC18493 similar to UP|Q948T9 (Q948T9) Respiratory burst oxidase homolog,
partial (15%)
Length = 553
Score = 32.7 bits (73), Expect = 0.079
Identities = 32/98 (32%), Positives = 50/98 (50%), Gaps = 7/98 (7%)
Frame = +1
Query: 50 STIRDIAEKLSETAEAAEAAASAAHTIDEQWRNACEEIESLKKDSEKQ-----LELSAQ- 103
S ++D A KL + SA+ T DE R E+I + DS Q ++ +A
Sbjct: 256 SELKDFACKLFDALARRRGITSASITKDEL-REIWEQITNQSFDSRVQTFFDLVDKNADG 432
Query: 104 KLKEYEVK-IISLSKEKEQLSKQREAATQEANMWRSEL 140
++ E +VK IISLS +LSK +E + + A++ EL
Sbjct: 433 RINEEQVKEIISLSASSNKLSKIQERSGEYASLIMEEL 546
>AW719204
Length = 544
Score = 29.3 bits (64), Expect = 0.87
Identities = 38/170 (22%), Positives = 63/170 (36%), Gaps = 27/170 (15%)
Frame = +3
Query: 27 MKET---LLVKDEELQNFARDLRTRDSTIRDIAEKLSETAEAAEAAASAAHTIDEQWRNA 83
+KET LL N+ S IRD+ +S+ E A S A+ + ++
Sbjct: 6 LKETECQLLNVKASADNYQEQYNFLSSEIRDMKNLVSQLKENVSTAESRANNAEAHCKSL 185
Query: 84 CEEIESLKKD----------------SEKQLELSAQKLKEYEVKIISLSKEKEQ------ 121
E E LKK+ EKQ+ S +L ++ V S+EK++
Sbjct: 186 TETNEELKKELTLLKDGGGTPEIVESLEKQMRESDLQL-QHAVASAEASQEKQKMLYSTI 362
Query: 122 --LSKQREAATQEANMWRSELGKARESGVILEGALARAEEKVRVAEANAE 169
++ E + S A E +IL + A E++ + E
Sbjct: 363 DDMNHVMEDLKSNFSKAESRADSAEEKCIILSESNADLNEEINFLRSRLE 512
>TC9298 UP|CAE02644 (CAE02644) Ornithine decarboxylase , complete
Length = 1522
Score = 28.9 bits (63), Expect = 1.1
Identities = 27/109 (24%), Positives = 43/109 (38%), Gaps = 2/109 (1%)
Frame = +2
Query: 58 KLSETAEAAEAAASAAHTID--EQWRNACEEIESLKKDSEKQLELSAQKLKEYEVKIISL 115
K + T A + + +D ++W CE + +K DSE L VK +L
Sbjct: 500 KYAATVGVNLATYDSVYEVDKVQKWHPKCELLLRIKYDSE-------GALASLGVKYGAL 658
Query: 116 SKEKEQLSKQREAATQEANMWRSELGKARESGVILEGALARAEEKVRVA 164
+E +L K EAA +G + L GA+ A+ +A
Sbjct: 659 PEEVPELLKAAEAAGVNVTGVSFHIGSGGADPLALSGAIEAAKSVFEMA 805
>TC14651 weakly similar to UP|Q42779 (Q42779) Alpha-carboxyltransferase
aCT-1 precursor , partial (22%)
Length = 1317
Score = 28.1 bits (61), Expect = 1.9
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = +1
Query: 86 EIESLKKDSEKQLELSA 102
EIE LKKD EK++E+SA
Sbjct: 493 EIEELKKDIEKEIEISA 543
>BI418174
Length = 602
Score = 28.1 bits (61), Expect = 1.9
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Frame = +2
Query: 13 TNKTTDGPMDDLTIMKETLLVKDEELQNFARDLRTRDSTIRDIAEKLSETAEAAEAAASA 72
T + GP I +E + D+ + RDL + A KLS A+ E A+
Sbjct: 326 TVEDNQGPSLKDVIEQEATNLSDQHKRISVRDLACKFDKNLAAAAKLSNEAKIREVASLE 505
Query: 73 AHTIDEQWRNACEEIE-----SLKKDSEKQL 98
H + ++ R+A E + K+D EK +
Sbjct: 506 GHVLLKKLRDALEYLRVRFAGRNKEDVEKAI 598
>TC10133 similar to UP|Q9LSS5 (Q9LSS5) Myosin heavy chain-like, partial (34%)
Length = 1827
Score = 27.7 bits (60), Expect = 2.5
Identities = 35/144 (24%), Positives = 62/144 (42%), Gaps = 22/144 (15%)
Frame = +1
Query: 23 DLTIMKETLLVKDEELQ-------NFARDLRTR-----DSTIRDIAEKLSETAEAAEA-- 68
D+ +K L+ K+ ELQ N L+ R D +R+ ++L A +A
Sbjct: 982 DIEELKANLMDKETELQGIMEENENLNSKLQVRTSCQSDHELRNEIKRLEHCVAALKADM 1161
Query: 69 --AASAAHTIDEQ------WRNACEEIESLKKDSEKQLELSAQKLKEYEVKIISLSKEKE 120
+ +I E+ RN EEIE+ K + L ++E E S S++
Sbjct: 1162 MDKETTLQSISEENEMLKLERNKSEEIEAAKAAEHEALMKLGIAMQEVE----SSSRKAA 1329
Query: 121 QLSKQREAATQEANMWRSELGKAR 144
++++Q EAA + +EL + +
Sbjct: 1330 RVTEQLEAAQASNSEMEAELRRMK 1401
>TC16620 weakly similar to UP|Q9FN67 (Q9FN67) Gb|AAD56319.1, partial (17%)
Length = 518
Score = 27.3 bits (59), Expect = 3.3
Identities = 15/54 (27%), Positives = 25/54 (45%)
Frame = -3
Query: 136 WRSELGKARESGVILEGALARAEEKVRVAEANAEAKIKEAVQGESAAVSEKQEL 189
W S + R + LEG L + R + + K GE++A+ EK++L
Sbjct: 354 WDSMIRSWRSKDLALEGRLPVLRRERRREKISGSLSTKGVQNGEASAILEKKDL 193
>BI418269
Length = 520
Score = 26.9 bits (58), Expect = 4.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 108 YEVKIISLSKEKEQLSKQREAATQ---EANMWRSELGKARESGVILEGAL 154
+ +K++ S E+E+LS T + +WR LG+ V+LEG +
Sbjct: 327 WTLKVVWRSAEEEKLSMPSGRPTWREGKGTVWRWRLGREESMVVVLEGVV 178
>TC19183
Length = 573
Score = 26.9 bits (58), Expect = 4.3
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +2
Query: 31 LLVKDEELQNFARDLRTRDSTIRDIAEKLSETAEAAEAAASAAHTIDEQWRNACEEIESL 90
L +K E + + + S + + EKL + +A +S QW C+ I +
Sbjct: 125 LKMKIENINSEIGEREQESSVLDEAREKLKRELDHYDAESSKLKIQVAQWVPECKTIFTD 304
Query: 91 KKDSEKQLELSAQKLKE 107
K+SE E++ K+
Sbjct: 305 LKNSEPDYEVAVTNTKK 355
>TC13626
Length = 575
Score = 26.6 bits (57), Expect = 5.6
Identities = 29/106 (27%), Positives = 50/106 (46%), Gaps = 9/106 (8%)
Frame = -2
Query: 41 FARDLRTRDSTIRDIAEKLSETAEAAEAAASAAHTIDEQWR--NACEEIESLKKDSEKQL 98
++R T+ ST R+ K SE EA+ +A S + + + AC + +SL + EK L
Sbjct: 394 YSRPNTTKRSTPRNA--KASEQMEASSSAMSTSLGMMKPGNVPTACTDRDSLFEGQEKSL 221
Query: 99 ELSAQKLKE--YEVKIISLSKEKEQLSKQR-----EAATQEANMWR 137
S KE ++ K +S S + S ++ E +Q +W+
Sbjct: 220 AQSTFSSKEILFQEKSLSQSFSLKGFSSKKSDHFLETFSQSFYIWQ 83
>TC14320 similar to UP|Q41111 (Q41111) Dehydrin, partial (56%)
Length = 1231
Score = 26.2 bits (56), Expect = 7.4
Identities = 36/140 (25%), Positives = 56/140 (39%), Gaps = 3/140 (2%)
Frame = +3
Query: 112 IISLSKEKEQLSKQREAATQEANMWRSELGKARESGVILEGALARAEEKVRVAEANAEAK 171
I++ + + S E TQ+ ++ LGK +E E + EKV+V+E + K
Sbjct: 354 IMAEENQNKYESGTTEVETQDRGVF-DFLGKKKEEEKPQEEVIVTEFEKVKVSEEPEKKK 530
Query: 172 IKEAVQGESAAVSEKQELLAYVDKLKAQLQRQHIDSTEVFEKTESCSDTKHVDLTEENVD 231
+ +GE S E L D + + +K + + K V T+EN
Sbjct: 531 EEVDHEGEKKH-STLLEKLHRSDSSSSSSSDEEEGKEGEEKKKKKKKEKKEVKSTDENT- 704
Query: 232 KACLSVSRSVP---DPAAAE 248
SVP DPA AE
Sbjct: 705 --------SVPVEVDPAHAE 740
>CB827028
Length = 572
Score = 25.8 bits (55), Expect = 9.6
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +2
Query: 220 TKHVDLTEENVDK-ACLSVSRSVPDPAAAECVVQM---PTDQVIIQPVGDNEWSDIQATE 275
+K + E N D CL S V DP A EC + P DQ I + W++++ +
Sbjct: 248 SKGQSILESNHDVLTCLQKSLDVLDPIAIECFKDLGLFPEDQRIPAAALVDMWAELRCGD 427
Query: 276 ARVA 279
A
Sbjct: 428 DETA 439
>BP038245
Length = 363
Score = 25.8 bits (55), Expect = 9.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 68 AAASAAHTIDEQWRNACEEIESLKKDSEKQLEL 100
A++SA + +WR CE S K E LEL
Sbjct: 101 ASSSAVNYGIPKWRTCCETASSSKPHMEPHLEL 199
>TC11535 similar to AAS10009 (AAS10009) MYB transcription factor, partial
(17%)
Length = 559
Score = 25.8 bits (55), Expect = 9.6
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 151 EGALARAEEKVRVAEANAEAKIKEAVQGESAAVSEKQE 188
E A+A AEE R AEA AEA+ + A AA+ +E
Sbjct: 78 EAAIAEAEEAAREAEA-AEAEAEAAEAFAQAAMKTMKE 188
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.307 0.122 0.315
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,429,520
Number of Sequences: 28460
Number of extensions: 31826
Number of successful extensions: 146
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of query: 306
length of database: 4,897,600
effective HSP length: 90
effective length of query: 216
effective length of database: 2,336,200
effective search space: 504619200
effective search space used: 504619200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0057b.10