TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0055.8
         (509 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15990                                                                34  0.050
TC11506 homologue to UP|Q9XIJ3 (Q9XIJ3) T10O24.21, partial (11%)       34  0.065
TC8272 similar to UP|AAQ72568 (AAQ72568) Ripening-related protei...    32  0.19
AV780136                                                               32  0.32
BP069774                                                               31  0.42
BP076242                                                               31  0.55
CB828268                                                               30  0.72
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr...    30  0.72
TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro...    30  0.72
TC13023 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragm...    29  1.6
AV767790                                                               29  2.1
AV416024                                                               28  2.7
TC10816 homologue to UP|CAE45585 (CAE45585) Coatomer alpha subun...    28  3.5
TC19321 weakly similar to UP|MT70_ARATH (O82486) Probable N6-ade...    28  3.5
TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protei...    28  4.6
TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG...    28  4.6
TC19735 similar to UP|Q8NJM5 (Q8NJM5) Probable ATP-dependent RNA...    27  6.1
TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-bi...    27  6.1
TC16369                                                                27  6.1
BP042379                                                               27  7.9

>TC15990 
          Length = 721

 Score = 34.3 bits (77), Expect = 0.050
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +1

Query: 347 SQMIAFVGNEGYILLVSTKTKQLVGSLKMS-GTTRSLAFSEDGQKLLSAGGDGQVYHWDL 405
           S ++    N  Y+L      K+   +L+ S GTT    F+ DG+ L++  G G ++ W++
Sbjct: 13  SMLLTTTNNHTYVLDAYGGEKRCGFNLEPSPGTTIEATFTPDGKYLVAGSGGGTMHAWNI 192

Query: 406 RTRTCI-----HKGVDEGCINSTALCTSPSGTLFAAGS 438
            T+  +     H GV         L  +P   +FAA S
Sbjct: 193 ETKNEVACWSSHIGV------PWCLKWAPRRAMFAAAS 288


>TC11506 homologue to UP|Q9XIJ3 (Q9XIJ3) T10O24.21, partial (11%)
          Length = 633

 Score = 33.9 bits (76), Expect = 0.065
 Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 6/42 (14%)
 Frame = +1

Query: 384 FSEDGQKLLSAGGDGQVYHWD------LRTRTCIHKGVDEGC 419
           FS DG+ ++S  GDG+ + WD       RT  C H+GV  GC
Sbjct: 10  FSPDGRFVMSGDGDGKCWFWDWKSCQVFRTLKC-HEGVCIGC 132


>TC8272 similar to UP|AAQ72568 (AAQ72568) Ripening-related protein, partial
           (64%)
          Length = 757

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 17/48 (35%), Positives = 24/48 (49%), Gaps = 9/48 (18%)
 Frame = +3

Query: 162 RAHHVKLNRGTDWAQLDSRLKLDRSDYDGEL---------TDDENEAV 200
           R HH KL+ G DW ++ S LK      DGE+          D+EN+ +
Sbjct: 183 RVHHTKLHEGEDWHEVGSALKHWTYVIDGEVHTCQERIESVDEENKTI 326


>AV780136 
          Length = 558

 Score = 31.6 bits (70), Expect = 0.32
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
 Frame = -1

Query: 351 AFVGNEGYILLVSTKTKQLVG---------SLKMSG---TTRSLAFSEDGQKLLSAGGDG 398
           A   NEG  +LVS  T++++          +LK+ G     R+L     G+  LS   D 
Sbjct: 558 ALAMNEGGTVLVSGGTEKVIRVWDPRSGSKTLKLRGHADNIRALLLDSTGRYCLSGSSDS 379

Query: 399 QVYHWDLRTRTCIH 412
            +  WD+    C+H
Sbjct: 378 MIRLWDIGQPRCLH 337


>BP069774 
          Length = 446

 Score = 31.2 bits (69), Expect = 0.42
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 377 GTTRSLAFSEDGQKLLSAGGDGQVYHWDLRTRTCIHKGVDEGCINS-TALCTSPSG 431
           G  + +AF+  G  L +   DG    WD  TR       D+GC +  T++C S  G
Sbjct: 101 GCMKCIAFNRRGTLLAAGCNDGSCVIWDFITRGIAKVLSDDGCSSPITSICWSKFG 268


>BP076242 
          Length = 470

 Score = 30.8 bits (68), Expect = 0.55
 Identities = 30/114 (26%), Positives = 47/114 (40%), Gaps = 5/114 (4%)
 Frame = +1

Query: 29  TVKSKKRKRD-RKREEHVVDMVEQVREMRKLESFLFGSLYSPLESGKEVDGEVEPSDLFF 87
           TV +  R+R        V D V Q R  +  + F    + SP ES  E++ E +      
Sbjct: 97  TVSNPNRRRTLHSLSACVCD*VCQKRMKQSKDPFEAAFVESPPESPVEIEAEPDGEAQNP 276

Query: 88  TDRSADSVLSVCDEDGEFSDGSGDGDDGLG----RKPAWVDEEEEKFTVNIAKV 137
              S  + ++   EDG+    +G G  G G     K    +EEE+   V + K+
Sbjct: 277 ASSSGVAQVTQAQEDGKKLSKTGTGTSGSGGGGKNKDDEEEEEEDNMDVELTKL 438


>CB828268 
          Length = 530

 Score = 30.4 bits (67), Expect = 0.72
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 353 VGNEGYILLVSTKTKQLVGSLKMSGTTRSLAFSEDGQKLLSAGGDGQVYHWDLRTRTCI 411
           VG E   L + +K  +      M G+  +    ++  KLL     G +Y WDL  RTC+
Sbjct: 307 VGCEDGSLQIYSKCGRRAMPTMMMGSAATFVDCDECWKLLLVTRKGSLYLWDLFNRTCL 483


>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
           (Fragment), partial (13%)
          Length = 667

 Score = 30.4 bits (67), Expect = 0.72
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = +1

Query: 123 VDEEEEKFTVNIAKVNRLRKLRKDEDESFISGSE----YVARLRAHHVKLNRGTDWAQLD 178
           VDE + K  V   K  + +K +KD++   ++ S+       + + H VK+  G+      
Sbjct: 43  VDEGKVKVEVEGEKKEKKKKKKKDQENGEVASSDEEKAEKEKKKKHKVKVEDGSPDLDQS 222

Query: 179 SRLKLDRSDYDGELTDDENEAVVRRGYEN 207
            + K  + D D E    +N A +  G E+
Sbjct: 223 EKKKKKKKDQDAE----DNAAEISNGKED 297


>TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
           (LIM domain interacting RING finger protein) (RING
           finger LIM domain-binding protein) (R-LIM) (NY-REN-43
           antigen), partial (4%)
          Length = 526

 Score = 30.4 bits (67), Expect = 0.72
 Identities = 24/82 (29%), Positives = 33/82 (39%)
 Frame = -1

Query: 33  KKRKRDRKREEHVVDMVEQVREMRKLESFLFGSLYSPLESGKEVDGEVEPSDLFFTDRSA 92
           KKRKR+    E      +        +S L   ++S L       GE E  D    + ++
Sbjct: 379 KKRKRNENAAEKKNVDDDDDDTTNNSQSMLV--IFSRLIGESSTRGEDEGDDDGEEESNS 206

Query: 93  DSVLSVCDEDGEFSDGSGDGDD 114
           D      DED +  DG GDG D
Sbjct: 205 DDADETADEDMDGGDGDGDGSD 140


>TC13023 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragment),
           partial (18%)
          Length = 591

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
 Frame = +1

Query: 316 SFDLVKGTLEKIGPLVGREEKSLEVFELSSDSQMIAFVGNEGYILLVSTKTKQLVGSLK- 374
           S  +V      I   +  + +S+    LS D  ++   G+   I +    T + V S K 
Sbjct: 226 SIKIVDSANASIRSTLQGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKG 405

Query: 375 MSGTTRSLAFSEDGQKLLSAGGDGQVYHWDLRTRTCIH 412
             G    ++    G  L + G D +V  WD+    C H
Sbjct: 406 HEGPVMCMSCHPSGGLLATGGADRKVLVWDVDGGYCTH 519



 Score = 28.1 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (57%)
 Frame = +1

Query: 247 GPVNSVQFHRNAQLLLTAGLDQKLRFFQIDG 277
           GPV  +  H +  LL T G D+K+  + +DG
Sbjct: 412 GPVMCMSCHPSGGLLATGGADRKVLVWDVDG 504


>AV767790 
          Length = 617

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 370 VGSLKMSGTTRSLA-FSEDGQKLLSAGGDGQVYHWDLRT 407
           VGS++ S +      FS DG+ L SAG D +V  W++ T
Sbjct: 453 VGSIRKSNSKVVCCHFSSDGKLLASAGHDQKVVLWNMET 569


>AV416024 
          Length = 249

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 399 QVYHWDLRTRTCIHKGVDEG 418
           Q+ HW  R+R C+H GV  G
Sbjct: 10  QISHWSGRSRKCLHGGVASG 69


>TC10816 homologue to UP|CAE45585 (CAE45585) Coatomer alpha subunit-like
           protein, partial (20%)
          Length = 979

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = +1

Query: 243 DPSNGPVNSVQFHRNAQLLLTAGLDQKLR 271
           D  +GPV  V FH +  L ++ G D K++
Sbjct: 382 DEHDGPVRGVHFHHSQPLFVSGGDDYKIK 468


>TC19321 weakly similar to UP|MT70_ARATH (O82486) Probable
           N6-adenosine-methyltransferase MT-A70-like protein  ,
           partial (8%)
          Length = 541

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 105 FSDGSGDGDDGLGRKPAWVDEE 126
           F+ GSG G +G+G K  W++EE
Sbjct: 422 FNLGSGGGREGVGAKGRWLNEE 357


>TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protein) (IK
           factor) (Cytokine IK), partial (6%)
          Length = 492

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
 Frame = +1

Query: 20  DREENSDVDTVKSKKRKRDRKRE----EHVVDMVEQVREMRKLE 59
           DR+ + D D  + ++R RDR RE    E   D   + RE  +LE
Sbjct: 340 DRDRDRDRDRERDRERDRDRDRERRNRERERDEENKARERARLE 471


>TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG
           {Arabidopsis thaliana;} , partial (24%)
          Length = 1048

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 384 FSEDGQKLLSAGGDGQVYHWDLRT 407
           FS DG+ L SAG D +V  W++ T
Sbjct: 18  FSSDGKMLASAGDDKKVVLWNMDT 89


>TC19735 similar to UP|Q8NJM5 (Q8NJM5) Probable ATP-dependent RNA helicase,
           partial (5%)
          Length = 565

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 1   MMSLISQNARPKIEEKEVVDREENSDVDTVKSK---KRKRDRKREEHVVDMVEQV 52
           + +LI       ++   +V+ E N      K+K   KR RD   EEH  +  EQ+
Sbjct: 102 VQNLIMAEPEDNLQSSPMVETENNKKKKEKKNKHDKKRPRDVANEEHAEEEEEQI 266


>TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
           protein beta subunit-like protein, complete
          Length = 1379

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 13/36 (36%), Positives = 18/36 (49%)
 Frame = +3

Query: 380 RSLAFSEDGQKLLSAGGDGQVYHWDLRTRTCIHKGV 415
           + +  S DGQ  LS   DG++  WDL   T   + V
Sbjct: 270 QDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFV 377


>TC16369 
          Length = 751

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 19  VDREENSDVDTVKSKKRKRDRKREEHVVDMVEQVRE--MRKLESFLF 63
           VDR  +   + V+SKK+K+  KR+  V+ +V  + E   RK + F F
Sbjct: 530 VDRIRSLGKEIVESKKKKKGVKRKRRVMIVVRALAEGLERKEKKFCF 670


>BP042379 
          Length = 560

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (49%)
 Frame = -2

Query: 12  KIEEKEVVDREENSDVDTVKSKKRKRDRKREEHVVDMVEQVREM 55
           K   KEV+  +E  D+   + +KR+R++         +E  REM
Sbjct: 235 KSSRKEVISAQEAEDLKMKEKRKREREKNLPRKKRRKLEAAREM 104


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,047,510
Number of Sequences: 28460
Number of extensions: 86171
Number of successful extensions: 423
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of query: 509
length of database: 4,897,600
effective HSP length: 94
effective length of query: 415
effective length of database: 2,222,360
effective search space: 922279400
effective search space used: 922279400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)