BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0052b.11
(434 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18273 similar to AAQ06240 (AAQ06240) Tubby-like protein TULP1,... 462 e-131
TC15562 homologue to AAQ06240 (AAQ06240) Tubby-like protein TULP... 283 4e-77
TC16601 similar to PIR|S42728|S42728 phosphodiesterase (clone p4... 262 9e-71
TC19092 similar to AAQ06244 (AAQ06244) Tubby-like protein TULP10... 237 2e-63
TC16299 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pr... 222 8e-59
TC9811 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pro... 213 4e-56
AV426770 181 2e-46
TC8658 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial... 158 2e-39
TC15193 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partia... 154 2e-38
AV417834 154 2e-38
BP048535 154 2e-38
TC16171 homologue to GB|AAM18187.1|33413451|AY092403 tubby-like ... 141 2e-34
TC9547 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pro... 138 2e-33
TC10623 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pr... 132 9e-32
AV418034 108 1e-24
TC11483 homologue to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, part... 90 6e-19
AV778913 67 3e-18
TC18620 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partia... 69 1e-12
BI419957 60 9e-10
CB829547 57 5e-09
>TC18273 similar to AAQ06240 (AAQ06240) Tubby-like protein TULP1, partial
(46%)
Length = 1016
Score = 462 bits (1189), Expect = e-131
Identities = 228/237 (96%), Positives = 231/237 (97%)
Frame = +2
Query: 1 MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPEL 60
MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPEL
Sbjct: 305 MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPEL 484
Query: 61 LRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYR 120
LRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIV SPE GKITFPVSLKQPG R
Sbjct: 485 LRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVSSPELSGKITFPVSLKQPGAR 664
Query: 121 DGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISR 180
DG IQCFIKRDKS +TYHLFLCLSPALLVENGKFLLSAKR+RRTTCTEYIIS+DADNISR
Sbjct: 665 DGHIQCFIKRDKSNMTYHLFLCLSPALLVENGKFLLSAKRSRRTTCTEYIISIDADNISR 844
Query: 181 SSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNI 237
SSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNI
Sbjct: 845 SSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNI 1015
>TC15562 homologue to AAQ06240 (AAQ06240) Tubby-like protein TULP1, partial
(21%)
Length = 635
Score = 283 bits (724), Expect = 4e-77
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 299 NSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVK 358
NSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVK
Sbjct: 1 NSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVK 180
Query: 359 NFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQ 418
NFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQ
Sbjct: 181 NFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQ 360
Query: 419 AFAICLTSFDTKLACE 434
AFAICLTSFDTKLACE
Sbjct: 361 AFAICLTSFDTKLACE 408
>TC16601 similar to PIR|S42728|S42728 phosphodiesterase (clone p4-6) - mouse
{Mus musculus;}, partial (23%)
Length = 716
Score = 262 bits (669), Expect = 9e-71
Identities = 133/177 (75%), Positives = 152/177 (85%), Gaps = 1/177 (0%)
Frame = +3
Query: 259 MHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEE 318
MHSIPAS+LD GG+VPG+PELLPR+L+DSFRSISF++S+D+S EFSS+RFS+I G+ NE+
Sbjct: 3 MHSIPASALDAGGTVPGQPELLPRSLDDSFRSISFSKSLDHSIEFSSSRFSEIGGSCNED 182
Query: 319 EEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTG 378
++ K RPL+LKNK PRWHEQL CWCLNFRGRVTVASVKNFQLIAATQP +
Sbjct: 183 DDGS-KMRPLLLKNKPPRWHEQLLCWCLNFRGRVTVASVKNFQLIAATQPPA-------- 335
Query: 379 TGAAPPSQP-PSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
GA PSQP P + DKIILQFGKVGKDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 336 AGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 506
>TC19092 similar to AAQ06244 (AAQ06244) Tubby-like protein TULP10, partial
(29%)
Length = 617
Score = 237 bits (605), Expect = 2e-63
Identities = 115/142 (80%), Positives = 123/142 (85%)
Frame = +1
Query: 1 MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPEL 60
MSFRSIVRDVRD FGSLSRRSFDV L GH R KS SV +LHDQPLVIQ+S WASLPPEL
Sbjct: 190 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSVQDLHDQPLVIQNSCWASLPPEL 369
Query: 61 LRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYR 120
L DVI+RLE +E+ WP RKHVVACAAVC+SWR MCK+IV SPEF GK+TFPVSLKQPG R
Sbjct: 370 LFDVIRRLEESENTWPARKHVVACAAVCQSWRNMCKDIVKSPEFSGKLTFPVSLKQPGPR 549
Query: 121 DGPIQCFIKRDKSKLTYHLFLC 142
DG IQCFIKRDKS LTYHLFLC
Sbjct: 550 DGIIQCFIKRDKSNLTYHLFLC 615
>TC16299 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (46%)
Length = 1037
Score = 222 bits (566), Expect = 8e-59
Identities = 122/217 (56%), Positives = 149/217 (68%)
Frame = +1
Query: 218 SRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKP 277
+R N K+VSPKVP+G+Y IA ++YELNVLG+RGPRRM+C M SIP S+++ GG P +
Sbjct: 13 TRLVNLKQVSPKVPTGNYPIAHISYELNVLGSRGPRRMHCVMDSIPTSAIEPGGVAPTQT 192
Query: 278 ELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRW 337
E + D F F RS + E S + G ++++G LVLKNKSPRW
Sbjct: 193 EFSLNNV-DMFPPFPFFRSKSSRAENSLS--------GPLADKKDGT---LVLKNKSPRW 336
Query: 338 HEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQ 397
HEQLQCWCLNF GRVTVASVKNFQL+A+ A G A P + DKIILQ
Sbjct: 337 HEQLQCWCLNFHGRVTVASVKNFQLVAS---AENGPAGP-------------EHDKIILQ 468
Query: 398 FGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
FGK+GKD+FTMDYRYP+SAFQAFAICL+SFDTK+ACE
Sbjct: 469 FGKIGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 579
>TC9811 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (38%)
Length = 638
Score = 213 bits (543), Expect = 4e-56
Identities = 111/212 (52%), Positives = 150/212 (70%), Gaps = 6/212 (2%)
Frame = +2
Query: 1 MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRS-SVHELHDQPLVI-----QSSRWA 54
MSFRS++ D R+ F+V +RSKS S S + + L++ + S WA
Sbjct: 32 MSFRSMILD---------RKGFEVKFSYGTRSKSESKSDTTIKESSLMVVDDGLKQSCWA 184
Query: 55 SLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITFPVSL 114
++PPELLRDV+ R+E +E WP RKHVVACA VC+SWR++ +EIV P+ K+TFP+SL
Sbjct: 185 NMPPELLRDVLMRIEASEHNWPARKHVVACAGVCRSWRDIMEEIVKPPQISTKLTFPISL 364
Query: 115 KQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMD 174
KQPG RD +QC+IKR++S TY+LFL L+ A ++GKFLL+A++ R T T+YIIS++
Sbjct: 365 KQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQA-STDDGKFLLAARKCRHATHTDYIISLN 541
Query: 175 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPP 206
D++SR SSTYIGKLRSNFLGTKF +YD PP
Sbjct: 542 HDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPP 637
>AV426770
Length = 271
Score = 181 bits (460), Expect = 2e-46
Identities = 89/89 (100%), Positives = 89/89 (100%)
Frame = +3
Query: 107 KITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTC 166
KITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTC
Sbjct: 3 KITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTC 182
Query: 167 TEYIISMDADNISRSSSTYIGKLRSNFLG 195
TEYIISMDADNISRSSSTYIGKLRSNFLG
Sbjct: 183 TEYIISMDADNISRSSSTYIGKLRSNFLG 269
>TC8658 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (26%)
Length = 639
Score = 158 bits (399), Expect = 2e-39
Identities = 75/115 (65%), Positives = 89/115 (77%)
Frame = +2
Query: 320 EEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGT 379
+ EG LVLKNK+PRWHEQLQCWCLNF+GRVTVASVKNFQL+AA P+
Sbjct: 44 QSEGSLEGLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSH--------- 196
Query: 380 GAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
+ P++ +K+ILQFGK+GKD+FTMDYRYPLSAFQAFA+CL+SFDTK ACE
Sbjct: 197 -----NVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFALCLSSFDTKPACE 346
>TC15193 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (27%)
Length = 607
Score = 154 bits (390), Expect = 2e-38
Identities = 74/108 (68%), Positives = 85/108 (78%)
Frame = +3
Query: 327 PLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQ 386
PLVLKNK+PRWHEQLQCWCLNF+GRVTVASVKNFQL A+ P+ A
Sbjct: 69 PLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLAASVDPSHNVSA------------ 212
Query: 387 PPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
++ +K+ILQFGK+GKDMFTMDYRYPLSAFQAFAICL++FDTK ACE
Sbjct: 213 --AEQEKVILQFGKIGKDMFTMDYRYPLSAFQAFAICLSTFDTKPACE 350
>AV417834
Length = 420
Score = 154 bits (390), Expect = 2e-38
Identities = 76/133 (57%), Positives = 100/133 (75%)
Frame = +2
Query: 156 LSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPP 215
L+AK+ RR T T++IIS+ AD+ SRSS+TYIGKLRSNFLGTKF +YD+QPP+
Sbjct: 5 LAAKKIRRATGTDFIISLVADDFSRSSNTYIGKLRSNFLGTKFTVYDSQPPHGAGMQLNS 184
Query: 216 GRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPG 275
SRRF+SK+VSP+VP+G+Y ++ + YELNVL TRGPRRM CTM+SIP S++ GGS P
Sbjct: 185 RSSRRFHSKQVSPRVPAGNYVVSTIAYELNVLRTRGPRRMQCTMNSIPISAIQEGGSAP- 361
Query: 276 KPELLPRALEDSF 288
P P+ ++ F
Sbjct: 362 TPTSFPQIIDKHF 400
>BP048535
Length = 500
Score = 154 bits (390), Expect = 2e-38
Identities = 74/108 (68%), Positives = 85/108 (78%)
Frame = -3
Query: 327 PLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQ 386
PLVLKN +PRWHEQLQCWCLNF+GRVTVASVKNFQL+AA +P A
Sbjct: 495 PLVLKNXAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPCLNVSA------------ 352
Query: 387 PPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
++ +K+ILQFGK+GKD+FTMDYRYPLSAFQAFAICL+SFDTK ACE
Sbjct: 351 --AEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 214
>TC16171 homologue to GB|AAM18187.1|33413451|AY092403 tubby-like protein 7
{Arabidopsis thaliana;}, partial (25%)
Length = 569
Score = 141 bits (356), Expect = 2e-34
Identities = 70/106 (66%), Positives = 78/106 (73%)
Frame = +1
Query: 329 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPP 388
+LKNK+P WHE LQCWCLNF GRVTVASVKNFQL+A + PP G G
Sbjct: 94 ILKNKAPSWHEHLQCWCLNFHGRVTVASVKNFQLVATVDRS-----PPGGKG-------- 234
Query: 389 SDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
D + ++LQFGKVG D+FTMDYR PLSAFQAFAICLTSF TKLACE
Sbjct: 235 -DEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 369
>TC9547 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (22%)
Length = 558
Score = 138 bits (348), Expect = 2e-33
Identities = 66/104 (63%), Positives = 80/104 (76%)
Frame = +1
Query: 331 KNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSD 390
KNKSPRWHEQLQCWCLNF GRVTVASVKNFQL+A+ + G + +Q
Sbjct: 1 KNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPR-----------NGVSEQAQ---- 135
Query: 391 PDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
+ ++L FGKVGKD+FTMDY+YP+SAF+AFAICL+SFDTK+ACE
Sbjct: 136 -ENVVLPFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 264
>TC10623 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (27%)
Length = 692
Score = 132 bits (333), Expect = 9e-32
Identities = 60/113 (53%), Positives = 88/113 (77%)
Frame = +1
Query: 48 IQSSRWASLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGK 107
++ S WA++P ELLR+V+ R+E +E WP RK VVACA VC+SWRE+ K+IV PEF K
Sbjct: 355 LRQSCWANMPQELLREVLLRIEASEEKWPARKSVVACAGVCRSWREITKDIVKKPEFSSK 534
Query: 108 ITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKR 160
+TFP+S+KQPG R+ +QCFI R+++ T++L+L L+ A L ++GKFLL+A++
Sbjct: 535 LTFPISVKQPGPRENLLQCFISRNRTTQTHYLYLNLTSA-LCDDGKFLLAARK 690
>AV418034
Length = 375
Score = 108 bits (271), Expect = 1e-24
Identities = 53/66 (80%), Positives = 59/66 (89%)
Frame = +3
Query: 1 MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPEL 60
MSFR IVRDVRDGFGSLSRRSF+V LPGH R KS SSV+EL +QP +IQ+SRWASLPPEL
Sbjct: 177 MSFRGIVRDVRDGFGSLSRRSFEVRLPGHHRGKSNSSVYELKEQPPIIQNSRWASLPPEL 356
Query: 61 LRDVIK 66
LRDVI+
Sbjct: 357 LRDVIR 374
>TC11483 homologue to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (15%)
Length = 541
Score = 90.1 bits (222), Expect = 6e-19
Identities = 50/107 (46%), Positives = 70/107 (64%), Gaps = 5/107 (4%)
Frame = +2
Query: 1 MSFRSIVRDVR---DGFGSLSRRSFDVILPGH--SRSKSRSSVHELHDQPLVIQSSRWAS 55
MS +SIVR++R DG GS+S+R + H R+KS + L +Q +WA+
Sbjct: 230 MSLKSIVREIREMRDGIGSISKRGAE---GKHWLRRTKSHIAPDVLVTPYEPVQQGQWAN 400
Query: 56 LPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSP 102
LPPELL D+I+R+E +E++WP R VV CA+VCKSWR + KEIV +P
Sbjct: 401 LPPELLLDIIRRVEESETSWPDRAVVVFCASVCKSWRSITKEIVKTP 541
>AV778913
Length = 493
Score = 67.4 bits (163), Expect(2) = 3e-18
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = -1
Query: 304 SSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTV-ASVKNFQL 362
++ RFS+I G+ NE+++ K RPL+L NK PRWHEQLQCWCLNF G VKNFQ+
Sbjct: 481 AAQRFSEIGGSCNEDDDGS-KMRPLLL*NKPPRWHEQLQCWCLNFTGTSNC*RLVKNFQV 305
Score = 40.8 bits (94), Expect(2) = 3e-18
Identities = 23/38 (60%), Positives = 27/38 (70%), Gaps = 2/38 (5%)
Frame = -3
Query: 399 GKVGKDMFT-MDYRYPLSAF-QAFAICLTSFDTKLACE 434
GK G+ + MDY+ L QAFAICL+SFDTKLACE
Sbjct: 203 GKAGEXTCSLMDYQVSLCLHSQAFAICLSSFDTKLACE 90
>TC18620 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (24%)
Length = 695
Score = 69.3 bits (168), Expect = 1e-12
Identities = 35/60 (58%), Positives = 47/60 (78%)
Frame = +1
Query: 190 RSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGT 249
RSNFLGTKF IYD+QPP++ A SRRF+SK+VSP+VP+ +Y ++ V+YEL+VL T
Sbjct: 514 RSNFLGTKFNIYDSQPPHDVAIQPNCRSSRRFSSKQVSPRVPACNYLVSTVSYELSVLCT 693
Score = 58.2 bits (139), Expect = 3e-09
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2
Query: 150 ENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLR 190
E K LL+AKRTRR TCT ++IS+ AD+ S+SSS Y+GKLR
Sbjct: 89 EGNKLLLAAKRTRRATCTNFVISLAADDFSKSSSKYVGKLR 211
>BI419957
Length = 558
Score = 59.7 bits (143), Expect = 9e-10
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = +2
Query: 395 ILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLAC 433
ILQ G+VGK F MDYRYPL+ +QAF +CL S D KL C
Sbjct: 410 ILQLGRVGKSKFVMDYRYPLTGYQAFCMCLASIDAKLCC 526
>CB829547
Length = 486
Score = 57.4 bits (137), Expect = 5e-09
Identities = 28/49 (57%), Positives = 38/49 (77%)
Frame = +1
Query: 148 LVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGT 196
L + GKFLL+A+R R T TEYIIS+DAD++S+ S+ Y+GKLR F+ T
Sbjct: 265 LTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLR*IFITT 411
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,138,563
Number of Sequences: 28460
Number of extensions: 131143
Number of successful extensions: 1272
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of query: 434
length of database: 4,897,600
effective HSP length: 93
effective length of query: 341
effective length of database: 2,250,820
effective search space: 767529620
effective search space used: 767529620
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0052b.11