BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0052a.3
(242 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9177 86 7e-18
BP047366 69 6e-13
TC18887 similar to UP|Q94KA6 (Q94KA6) bZIP transcription factor ... 69 7e-13
BP080797 67 3e-12
BP037350 66 6e-12
AV776064 49 2e-09
TC17298 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor,... 49 1e-06
TC12543 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor,... 48 1e-06
TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete 47 2e-06
TC15903 similar to UP|Q40724 (Q40724) Transcriptional activator ... 47 3e-06
TC14298 homologue to UP|Q8L5W2 (Q8L5W2) bZIP transcription facto... 44 2e-05
BF177802 39 6e-04
TC14866 similar to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ... 39 8e-04
TC20149 similar to UP|Q93XA2 (Q93XA2) TGA-type basic leucine zip... 39 0.001
TC14457 similar to UP|Q8GTZ1 (Q8GTZ1) bZIP transcription factor,... 37 0.002
TC18406 similar to UP|O23726 (O23726) B-Zip DNA binding protein,... 37 0.003
BP074386 36 0.005
AV426757 33 0.044
AV425893 33 0.044
TC15653 similar to UP|Q941L5 (Q941L5) bZIP transcription factor ... 33 0.058
>TC9177
Length = 558
Score = 85.5 bits (210), Expect = 7e-18
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +1
Query: 202 LLKEKAERTKERFKQLMEEVIPVVEKRRPPRPLRRINSMQW 242
LLKEKAERTKERFKQLMEEVIPVVEKRRPPRPLRRINSMQW
Sbjct: 1 LLKEKAERTKERFKQLMEEVIPVVEKRRPPRPLRRINSMQW 123
>BP047366
Length = 535
Score = 69.3 bits (168), Expect = 6e-13
Identities = 40/84 (47%), Positives = 53/84 (62%)
Frame = -3
Query: 156 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKEKAERTKERFK 215
++K ++RQ+RMIKNRESAARSR RKQAY ELE +LEEEN++L R +
Sbjct: 503 VEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERL----------RRQ 354
Query: 216 QLMEEVIPVVEKRRPPRPLRRINS 239
+E+V+P V P LRR +S
Sbjct: 353 HEIEQVLPSVPPPDPKHQLRRTSS 282
>TC18887 similar to UP|Q94KA6 (Q94KA6) bZIP transcription factor 6, partial
(64%)
Length = 944
Score = 68.9 bits (167), Expect = 7e-13
Identities = 37/63 (58%), Positives = 47/63 (73%)
Frame = +3
Query: 146 GKRGRPVVENLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKE 205
G RGR ++K ++RQRRMIKNRESAARSR RKQAY +ELE KL+EEN++L K+
Sbjct: 738 GLRGRKTGA-VEKVIERRQRRMIKNRESAARSRARKQAYTMELEQEVAKLKEENEELQKK 914
Query: 206 KAE 208
+ E
Sbjct: 915 QEE 923
Score = 41.6 bits (96), Expect = 1e-04
Identities = 33/138 (23%), Positives = 65/138 (46%), Gaps = 5/138 (3%)
Frame = +3
Query: 50 RTVDDVWQEIIAGDHHQCKEEIPDEM----MTLEDFLVKAGAVDGDDEDDEVKMSMPLTE 105
+TVD VW++I + D+ P + MTLE+FLV+AG V D ++D V +
Sbjct: 60 KTVDQVWKDI-SKDYGPSLVAPPRQPTLGEMTLEEFLVRAGVVREDAKNDAVFADLARAG 236
Query: 106 RLSGV-FSLDGSSFQGMEGVEGGSASVGGFGNGVEVVEGTRGKRGRPVVENLDKAAQQRQ 164
SG+ F + G+ GG+ + G + + + + P+ N ++ Q+Q
Sbjct: 237 NNSGLGFEFQAQQMNRIAGLMGGNNRIPGASD--DPIVSLQNSTNLPLNANGFRSPNQQQ 410
Query: 165 RRMIKNRESAARSRERKQ 182
+ ++++ + + +Q
Sbjct: 411 QMQNSHQQNHQQQQHHQQ 464
>BP080797
Length = 498
Score = 67.0 bits (162), Expect = 3e-12
Identities = 43/92 (46%), Positives = 53/92 (56%)
Frame = -2
Query: 148 RGRPVVENLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKEKA 207
R R + +KA ++R RR IKNRESAARSR RKQAY EL S +LE++N KL KEK
Sbjct: 488 RKRDGPDAYEKALERRLRRKIKNRESAARSRARKQAYHNELVSKVTRLEQDNIKLKKEKD 309
Query: 208 ERTKERFKQLMEEVIPVVEKRRPPRPLRRINS 239
E+ +P R P LRRI+S
Sbjct: 308 ----------FEQSLPPEPSRGPRYQLRRISS 243
>BP037350
Length = 495
Score = 65.9 bits (159), Expect = 6e-12
Identities = 41/93 (44%), Positives = 54/93 (57%)
Frame = -2
Query: 147 KRGRPVVENLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKEK 206
KR P + + K ++RQ+RMIKNRESAARSR RK AY EL + +LEEEN++L K K
Sbjct: 416 KRSAPE-DMVGKTVERRQKRMIKNRESAARSRARKHAYTNEL*NKVSRLEEENERLRKRK 240
Query: 207 AERTKERFKQLMEEVIPVVEKRRPPRPLRRINS 239
+E+++P P LRRI S
Sbjct: 239 E----------LEQMLPCTPPPEPKYQLRRIAS 171
>AV776064
Length = 418
Score = 48.5 bits (114), Expect(2) = 2e-09
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -1
Query: 144 TRGKRGRPVVENLDKAAQQRQRRMIKNRESAARSRERKQAY 184
T G++ + ++K ++RQ+RMIKNRESAARSR RKQAY
Sbjct: 406 TPGRKRSAPEDMVEKTVERRQKRMIKNRESAARSRARKQAY 284
Score = 28.5 bits (62), Expect(2) = 2e-09
Identities = 18/53 (33%), Positives = 26/53 (48%)
Frame = -2
Query: 187 ELESLAVKLEEENDKLLKEKAERTKERFKQLMEEVIPVVEKRRPPRPLRRINS 239
ELE+ +LEEEN++ K K +E+++P P LRRI S
Sbjct: 276 ELENKVSRLEEENERPRKRKE----------LEQMLPCTPPPEPKYQLRRIAS 148
>TC17298 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor, partial
(39%)
Length = 484
Score = 48.5 bits (114), Expect = 1e-06
Identities = 28/60 (46%), Positives = 38/60 (62%)
Frame = +1
Query: 161 QQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKEKAERTKERFKQLMEE 220
+++ RRMI NRESA RSR RKQ + EL S+ V L EN +LL EK E ++++E
Sbjct: 304 ERKHRRMISNRESARRSRMRKQKHLDELWSMVVCLRNENHQLL-EKLNHLSESHDRVVQE 480
>TC12543 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor, partial
(52%)
Length = 510
Score = 48.1 bits (113), Expect = 1e-06
Identities = 31/76 (40%), Positives = 43/76 (55%)
Frame = +3
Query: 161 QQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKEKAERTKERFKQLMEE 220
+++ RRMI NRESA RSR RKQ + EL S V L EN +LL +K E Q+++E
Sbjct: 234 ERKHRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLL-DKLSHASESHDQVVQE 410
Query: 221 VIPVVEKRRPPRPLRR 236
+ E+ R + R
Sbjct: 411 NAQLKEEAIELRQMLR 458
>TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete
Length = 1793
Score = 47.4 bits (111), Expect = 2e-06
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 118 FQGMEGVEGGSASVGGFGNGVEVVEGT---RGKRGRPVVENLDKAAQQRQRRMIKNRESA 174
F G S G G E V+G + KRGR + K R +R+++NR SA
Sbjct: 1057 FGGESAATSASRPDTGSNPGPERVQGAGEGQKKRGRSSADKESK----RLKRLLRNRVSA 1224
Query: 175 ARSRERKQAYQVELESLAVKLEEENDKLLKEKAERTKERFKQLMEEVI 222
++RERK+AY +LE+ LE N + LKE+ T + Q++ +++
Sbjct: 1225 QQARERKKAYLTDLETKVKDLETNNSE-LKERLS-TLQNENQMLRQIL 1362
>TC15903 similar to UP|Q40724 (Q40724) Transcriptional activator protein
(RITA-1 protein), partial (21%)
Length = 603
Score = 47.0 bits (110), Expect = 3e-06
Identities = 29/80 (36%), Positives = 40/80 (49%)
Frame = +1
Query: 126 GGSASVGGFGNGVEVVEGTRGKRGRPVVENLDKAAQQRQRRMIKNRESAARSRERKQAYQ 185
GG + G +G P ++ + +R RR + NRESA RSR RKQA+
Sbjct: 358 GGENHLKGTSSGSSDRSDEDDDEAGPCEQSNNPQDVKRLRRKVSNRESARRSRRRKQAHL 537
Query: 186 VELESLAVKLEEENDKLLKE 205
ELE+ KL+ EN L K+
Sbjct: 538 AELETQVEKLKLENATLYKQ 597
>TC14298 homologue to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ATB2,
partial (62%)
Length = 1585
Score = 44.3 bits (103), Expect = 2e-05
Identities = 28/76 (36%), Positives = 43/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 129 ASVGGFGNGVEVVEGTRGKRGRPVVENLDKAAQQRQR-RMIKNRESAARSRERKQAYQVE 187
AS G +G +++ + + E+L QR+R RMI NRESA RSR RKQ + +
Sbjct: 615 ASSSGTSSGSSLLQNSGSE------EDLQAVMDQRKRKRMISNRESARRSRMRKQKHLDD 776
Query: 188 LESLAVKLEEENDKLL 203
L S +L +EN +++
Sbjct: 777 LASQVTQLRKENQQII 824
>BF177802
Length = 481
Score = 39.3 bits (90), Expect = 6e-04
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +1
Query: 160 AQQRQRRMIKNRESAARSRERKQAYQ 185
+ QR++R++KNRESA RSR RKQAY+
Sbjct: 403 SDQRRKRILKNRESALRSRARKQAYK 480
>TC14866 similar to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ATB2,
partial (60%)
Length = 948
Score = 38.9 bits (89), Expect = 8e-04
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +3
Query: 161 QQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLL 203
Q++ +R NRESA RSR RKQ++ +L S +L +EN ++L
Sbjct: 54 QRKNKRKQSNRESARRSRMRKQSHLEDLTSQVTQLTKENGEIL 182
>TC20149 similar to UP|Q93XA2 (Q93XA2) TGA-type basic leucine zipper protein
TGA1.1, partial (43%)
Length = 588
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/41 (51%), Positives = 30/41 (72%), Gaps = 3/41 (7%)
Frame = +2
Query: 164 QRRMIKNRESAARSRERKQAYQVELESLAVK---LEEENDK 201
QRR+ +NRE+A +SR RK+AY +LES +K LE+E D+
Sbjct: 359 QRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELDR 481
>TC14457 similar to UP|Q8GTZ1 (Q8GTZ1) bZIP transcription factor, partial
(50%)
Length = 645
Score = 37.4 bits (85), Expect = 0.002
Identities = 23/80 (28%), Positives = 41/80 (50%)
Frame = +1
Query: 161 QQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKEKAERTKERFKQLMEE 220
Q++++RM NRESA RSR RKQ + + + +L++EN+++ T+ E
Sbjct: 16 QKKRKRMQSNRESARRSRMRKQEHLEGMSAQVEQLKKENNQISTNIGVTTQMYLNVEAEN 195
Query: 221 VIPVVEKRRPPRPLRRINSM 240
I V+ L+ +N +
Sbjct: 196 AILRVQMAELSNRLQSLNEI 255
>TC18406 similar to UP|O23726 (O23726) B-Zip DNA binding protein, partial
(14%)
Length = 491
Score = 37.0 bits (84), Expect = 0.003
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +3
Query: 162 QRQRRMIKNRESAARSRERKQAYQVELE 189
+R +R++ NR+SAARS+ERK Y +ELE
Sbjct: 390 KRAKRILANRQSAARSKERKACYVLELE 473
>BP074386
Length = 496
Score = 36.2 bits (82), Expect = 0.005
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3
Query: 165 RRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLLKEKAE 208
RR+ +NRE+A +SR RK+AY +LES +KL L + +++
Sbjct: 129 RRLAQNREAAKKSRLRKKAYVQQLESSRLKLSHLEQDLQRLRSQ 260
>AV426757
Length = 415
Score = 33.1 bits (74), Expect = 0.044
Identities = 17/37 (45%), Positives = 23/37 (61%)
Frame = +1
Query: 162 QRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEE 198
+R +R++ NR+SA RSR RK Y ELE L+ E
Sbjct: 46 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTE 156
>AV425893
Length = 414
Score = 33.1 bits (74), Expect = 0.044
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -2
Query: 123 GVEGGSASVGGFGNGVEVVEGTRGKRGRPVVENLDKAAQQRQRRMIKNRESAARSRERKQ 182
G GG+A+ G G V RG+ VV + +AA+ +R ++N+ RER++
Sbjct: 392 GETGGAAATDGGGVPTGTVTAARGRAAAAVVRH--EAAEVAERAAVRNKPGGPPHRERRR 219
Query: 183 A 183
A
Sbjct: 218 A 216
>TC15653 similar to UP|Q941L5 (Q941L5) bZIP transcription factor BZI-4,
partial (25%)
Length = 511
Score = 32.7 bits (73), Expect = 0.058
Identities = 21/43 (48%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = +2
Query: 154 ENLDKAAQQRQR-RMIKNRESAARSRERKQAYQVELESLAVKL 195
E D A R+R RM+ NRESA RSR RKQ +LE L ++
Sbjct: 377 EGGDLAIDDRKRKRMVSNRESARRSRMRKQK---QLEDLTAEM 496
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,328,234
Number of Sequences: 28460
Number of extensions: 40912
Number of successful extensions: 560
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of query: 242
length of database: 4,897,600
effective HSP length: 88
effective length of query: 154
effective length of database: 2,393,120
effective search space: 368540480
effective search space used: 368540480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0052a.3