TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0051b.7
         (189 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19004                                                                32  7e-05
TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)            28  0.99
TC8125                                                                 28  0.99
TC16347 similar to GB|AAC96325.1|4028592|AF104902 ZIC2 protein {...    27  1.7
TC16890                                                                27  2.9
BP082889                                                               26  3.8
BP067433                                                               26  3.8
TC11133                                                                26  3.8
AU088854                                                               26  4.9
TC12754 similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding ...    25  6.4
TC8783 similar to UP|Q8L759 (Q8L759) Expressed protein (At5g5765...    25  6.4
AV409844                                                               25  6.4
AV778421                                                               25  8.4
BP045743                                                               25  8.4
TC17351 weakly similar to UP|Q8L7T3 (Q8L7T3) Ubiquitin-conjugati...    25  8.4

>TC19004 
          Length = 445

 Score = 32.3 bits (72), Expect(2) = 7e-05
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -3

Query: 77  VRSDWAPNRNRPIQLIWSRFF 97
           VRSD APNRNRP Q  WS  F
Sbjct: 395 VRSDQAPNRNRPNQPKWSSVF 333



 Score = 28.9 bits (63), Expect(2) = 7e-05
 Identities = 12/22 (54%), Positives = 13/22 (58%)
 Frame = -2

Query: 96  FFPSLNPPSDPSEPSGPVFGRG 117
           F P LNPP DP+EP  P    G
Sbjct: 336 FSPLLNPPPDPTEPRRPFLVAG 271



 Score = 28.1 bits (61), Expect = 0.99
 Identities = 12/28 (42%), Positives = 14/28 (49%)
 Frame = -1

Query: 94  SRFFPSLNPPSDPSEPSGPVFGRGPVGF 121
           +RFF    P + P       FG GPVGF
Sbjct: 343 ARFFSITQPATRPDRTEKAFFGSGPVGF 260


>TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)
          Length = 592

 Score = 28.1 bits (61), Expect = 0.99
 Identities = 15/32 (46%), Positives = 20/32 (61%)
 Frame = -2

Query: 40  SMEEEGKKLRRCSGGVARVVAAQRMAAQVMRR 71
           S+EE    +  CSGGVA VVAA   A+ + +R
Sbjct: 384 SLEEPEGAVAGCSGGVAVVVAAPPRASMMRQR 289


>TC8125 
          Length = 1373

 Score = 28.1 bits (61), Expect = 0.99
 Identities = 26/93 (27%), Positives = 38/93 (39%), Gaps = 3/93 (3%)
 Frame = -2

Query: 6   LDRFRVGRVTGGSGRFHRNRLRQNEDEQAISDQRSMEEEGKKLRRCSGGV---ARVVAAQ 62
           L R R  ++  G  R H N  R    +    +Q+      + LRR SG V    +V  + 
Sbjct: 529 LPRHRRHQLADGGFRPHENLHRPEASKNRHLEQQLRRLSRQTLRRRSGVVPVRQKVRVSL 350

Query: 63  RMAAQVMRRRVVAVVRSDWAPNRNRPIQLIWSR 95
           R A +     VVAV R      +  P   +W+R
Sbjct: 349 RTAERSRSHGVVAVARRRSLNRQPSPPVAVWTR 251


>TC16347 similar to GB|AAC96325.1|4028592|AF104902 ZIC2 protein {Homo
           sapiens;} , partial (5%)
          Length = 599

 Score = 27.3 bits (59), Expect = 1.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 87  RPIQLIWSRFFPSLNPPSDPSEPSGP 112
           R I ++     PSL PP  PSEP  P
Sbjct: 375 RMISMLPPPAMPSLTPPPQPSEPPSP 298


>TC16890 
          Length = 965

 Score = 26.6 bits (57), Expect = 2.9
 Identities = 17/57 (29%), Positives = 27/57 (46%)
 Frame = +3

Query: 46  KKLRRCSGGVARVVAAQRMAAQVMRRRVVAVVRSDWAPNRNRPIQLIWSRFFPSLNP 102
           +K+RRC G +  +   +R   +  R R+     S W   + +P  L+   F  SLNP
Sbjct: 231 RKMRRCQGLLFPISRPRRKRLRGRRWRLERRFSSSWVGLKKKPNVLL--PFVRSLNP 395


>BP082889 
          Length = 347

 Score = 26.2 bits (56), Expect = 3.8
 Identities = 10/12 (83%), Positives = 12/12 (99%)
 Frame = -2

Query: 122 VQEVMVKENVHI 133
           VQE+MVKENVH+
Sbjct: 256 VQEIMVKENVHL 221


>BP067433 
          Length = 421

 Score = 26.2 bits (56), Expect = 3.8
 Identities = 10/12 (83%), Positives = 12/12 (99%)
 Frame = -2

Query: 122 VQEVMVKENVHI 133
           VQE+MVKENVH+
Sbjct: 360 VQEIMVKENVHL 325


>TC11133 
          Length = 598

 Score = 26.2 bits (56), Expect = 3.8
 Identities = 10/12 (83%), Positives = 12/12 (99%)
 Frame = +2

Query: 122 VQEVMVKENVHI 133
           VQE+MVKENVH+
Sbjct: 26  VQEIMVKENVHL 61


>AU088854 
          Length = 675

 Score = 25.8 bits (55), Expect = 4.9
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 71  RRVVAVVRSDWAPN-RNRPIQLIWSRFFPSLNPPSDP 106
           +R V     DW    R+ P    W R  PSL+ PS P
Sbjct: 78  KRSVRTEAKDWKSRPRSHPQPWPWFRSLPSLSLPSQP 188


>TC12754 similar to UP|Q9FHM5 (Q9FHM5) Similarity to DNA-binding protein,
           partial (24%)
          Length = 932

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = +1

Query: 79  SDWAPNRNRPIQLIWSRF---FPSLNPPSDPSEPSGPVFGRG 117
           S W   R RP++ I   F   F S  PP+ P    G  +  G
Sbjct: 613 SAWKRGRGRPVESIKKSFKLDFESPGPPAAPGPGEGIAYSIG 738


>TC8783 similar to UP|Q8L759 (Q8L759) Expressed protein (At5g57655),
           partial (49%)
          Length = 1243

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 12/38 (31%), Positives = 18/38 (46%)
 Frame = -2

Query: 66  AQVMRRRVVAVVRSDWAPNRNRPIQLIWSRFFPSLNPP 103
           A  +R R +  + + WA N++    L    F   LNPP
Sbjct: 504 AAFLRPRAIVSIPTMWAMNKSSTSVLSLRNFASKLNPP 391


>AV409844 
          Length = 419

 Score = 25.4 bits (54), Expect = 6.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 2   RCVGLDRFRVGRVTGGSG 19
           +CVGL R RVG   G SG
Sbjct: 134 KCVGLQRHRVGH*WGSSG 187


>AV778421 
          Length = 211

 Score = 25.0 bits (53), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 93  WSRFFPSLNPPSDPSEPSG 111
           WS  +P++ P SD   P+G
Sbjct: 40  WSSLYPTIRPHSDTEYPTG 96


>BP045743 
          Length = 512

 Score = 25.0 bits (53), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 2/43 (4%)
 Frame = +2

Query: 64  MAAQVMRRRV--VAVVRSDWAPNRNRPIQLIWSRFFPSLNPPS 104
           MAA+   RR     +  + W P  + P +L+ S +FPS + P+
Sbjct: 371 MAAKASSRRFH*CLLHGNSWKPPLSSPPKLVSSPYFPSQHSPN 499


>TC17351 weakly similar to UP|Q8L7T3 (Q8L7T3) Ubiquitin-conjugating enzyme
           E2  (Ubiquitin-protein ligase) (Ubiquitin carrier
           protein) (At1g50490) , partial (33%)
          Length = 461

 Score = 25.0 bits (53), Expect = 8.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 42  EEEGKKLRRCSGGVARVVAAQRMAAQVMRRRVVAVVRSDWAPNRNR 87
           E  G +  RC+GGVA  ++A  +       R   + RS   PN NR
Sbjct: 194 ETAGVRRLRCAGGVAGELSAVGLG------RTSMIARSRRRPNPNR 75


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.143    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,154,060
Number of Sequences: 28460
Number of extensions: 41406
Number of successful extensions: 375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of query: 189
length of database: 4,897,600
effective HSP length: 85
effective length of query: 104
effective length of database: 2,478,500
effective search space: 257764000
effective search space used: 257764000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)