TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0051b.2
         (276 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7918 UP|AAQ87019 (AAQ87019) VDAC1.1, complete                       543  e-155
TC8300 UP|AAQ87020 (AAQ87020) VDAC1.2, complete                       498  e-142
TC8223 UP|AAQ87021 (AAQ87021) VDAC1.3, complete                       426  e-120
TC8287 UP|AAQ87022 (AAQ87022) VDAC2.1, complete                       288  5e-79
TC17153 UP|AAQ87023 (AAQ87023) VDAC3.1, complete                      263  3e-71
AV772563                                                               78  5e-24
BP028898                                                               62  8e-11
TC9298 UP|CAE02644 (CAE02644) Ornithine decarboxylase  , complete      26  8.4

>TC7918 UP|AAQ87019 (AAQ87019) VDAC1.1, complete
          Length = 1601

 Score =  543 bits (1398), Expect = e-155
 Identities = 276/276 (100%), Positives = 276/276 (100%)
 Frame = +2

Query: 1   MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
           MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL
Sbjct: 80  MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 259

Query: 61  KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
           KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS
Sbjct: 260 KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 439

Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
           IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD
Sbjct: 440 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 619

Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
           ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL
Sbjct: 620 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 799

Query: 241 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
           IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP
Sbjct: 800 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 907


>TC8300 UP|AAQ87020 (AAQ87020) VDAC1.2, complete
          Length = 1293

 Score =  498 bits (1281), Expect = e-142
 Identities = 244/276 (88%), Positives = 265/276 (95%)
 Frame = +3

Query: 1   MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
           MAKGPGLYTDIGK+ARDLLFKDYHSDQKFTITT+SPTGVAITSSG KKGELFVADVNTQL
Sbjct: 87  MAKGPGLYTDIGKRARDLLFKDYHSDQKFTITTYSPTGVAITSSGIKKGELFVADVNTQL 266

Query: 61  KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
           KNKNITTD+KVDTDSNLFTT+ V++PAPGLKAIFSF+VPDQRSGKVELQYLHDYAGIS+S
Sbjct: 267 KNKNITTDLKVDTDSNLFTTVTVDEPAPGLKAIFSFRVPDQRSGKVELQYLHDYAGISTS 446

Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
           +GLT NPIVNFSGV+GTN LA+G DL+FDTKIGELTK NAGL+FTK DLIA+LT+NDKGD
Sbjct: 447 VGLTPNPIVNFSGVVGTNALAVGTDLSFDTKIGELTKFNAGLNFTKADLIASLTVNDKGD 626

Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
           ALNASYYH+V+PLTNTA GAEVTHRFSTNENTLTLGTQHALDPLT++KARVNN GKA+AL
Sbjct: 627 ALNASYYHIVNPLTNTAFGAEVTHRFSTNENTLTLGTQHALDPLTSVKARVNNLGKANAL 806

Query: 241 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
           IQHEWR KSFFTISGEVDTKAIEKSAK+GL LALKP
Sbjct: 807 IQHEWRAKSFFTISGEVDTKAIEKSAKIGLGLALKP 914


>TC8223 UP|AAQ87021 (AAQ87021) VDAC1.3, complete
          Length = 1261

 Score =  426 bits (1096), Expect = e-120
 Identities = 208/276 (75%), Positives = 245/276 (88%)
 Frame = +2

Query: 1   MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
           M KGPGLY+DIGKKARDLLFKDY +D KFTITT++  GV ITS+G KKGE+++ADV+T+L
Sbjct: 29  MVKGPGLYSDIGKKARDLLFKDYQNDHKFTITTYTSAGVEITSTGVKKGEIYLADVSTKL 208

Query: 61  KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
           KNKNITTD+KVDT+SNL TTI V++PAPGLK IFSF  PDQ+SGKVELQY H+YAGIS+S
Sbjct: 209 KNKNITTDVKVDTNSNLHTTITVDEPAPGLKTIFSFIFPDQKSGKVELQYQHEYAGISTS 388

Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
           IGLTA+PIVNFSG+IG N++A+G DL+FDT  G  TK NAGL+ T  DLIA+LTLNDKGD
Sbjct: 389 IGLTASPIVNFSGIIGNNLVAVGTDLSFDTASGNFTKYNAGLNVTHADLIASLTLNDKGD 568

Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
           +LNASYYHVVSPLTNTAVGAE++H FS+NEN LT+GTQHALDP+T LKARVNN+G+ASAL
Sbjct: 569 SLNASYYHVVSPLTNTAVGAELSHSFSSNENILTIGTQHALDPITLLKARVNNYGRASAL 748

Query: 241 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
           IQHEW P++  ++ GEVDT AIEKSAKVGLALALKP
Sbjct: 749 IQHEWNPRTRVSLVGEVDTGAIEKSAKVGLALALKP 856


>TC8287 UP|AAQ87022 (AAQ87022) VDAC2.1, complete
          Length = 1194

 Score =  288 bits (738), Expect = 5e-79
 Identities = 145/276 (52%), Positives = 193/276 (69%)
 Frame = +1

Query: 1   MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
           M+KGPGL++DIGKK RDLL KDY SDQK T++++S  GVA+TS+  KKG L V DV    
Sbjct: 91  MSKGPGLFSDIGKKPRDLLTKDYSSDQKLTVSSYSTAGVALTSTAVKKGGLSVGDVAALY 270

Query: 61  KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
           K KN   D+K+DT S + TT+   D  P  KAI SFK+PD  SGK+E+QY HD+A ++++
Sbjct: 271 KYKNTLIDVKLDTASIISTTLTFTDLLPSTKAIASFKLPDYNSGKLEVQYFHDHATLTAA 450

Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
             L  +PI++ S   GT V+A+GA+  +DT  G  TK  AG+S TK D  A++ L DKGD
Sbjct: 451 AALNQSPIIDVSATFGTPVIAVGAEAGYDTSSGGFTKYTAGISVTKPDASASIILGDKGD 630

Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
           ++ ASY H +  L  +A  AE+T +FSTNENT T+G   A+D LT ++AR+NN GK  AL
Sbjct: 631 SIKASYLHHLDQLKKSAAVAEITRKFSTNENTFTVGGSFAIDHLTQVRARLNNHGKLGAL 810

Query: 241 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
           +QHE  PKS  TIS EVDTKA++K+ + GLA+ALKP
Sbjct: 811 LQHEIIPKSVLTISSEVDTKALDKNPRFGLAIALKP 918


>TC17153 UP|AAQ87023 (AAQ87023) VDAC3.1, complete
          Length = 1175

 Score =  263 bits (671), Expect = 3e-71
 Identities = 134/277 (48%), Positives = 182/277 (65%), Gaps = 1/277 (0%)
 Frame = +2

Query: 1   MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
           MA GP LY +IGK+ARDLL+KDY+ DQKF ++  S TG+ + ++G KK ++F+ D+NT  
Sbjct: 146 MANGPALYPEIGKRARDLLYKDYNFDQKFNLSIPSSTGLGLIATGLKKDQIFIGDINTLY 325

Query: 61  KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
           K+ N+T D+KVDT SN+ T + +ND     K   SF +PD +SGK+++QYLH +A I SS
Sbjct: 326 KSGNLTVDVKVDTYSNVSTKVTLNDIFRCKKVALSFNIPDHKSGKLDVQYLHPHAAIDSS 505

Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
           IGL  +P +  S  IG+  L +GA++ F+T     TK NAG++F + D  AAL L DKG 
Sbjct: 506 IGLNPSPQLELSTAIGSKDLCMGAEVGFNTTSASFTKYNAGITFNRPDFSAALMLVDKGK 685

Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
           +L ASY H V       V AE+ HRFS+ EN  T+G+   +DP T LK R ++ GKA+ L
Sbjct: 686 SLKASYIHHVDRPDGFTVAAEINHRFSSFENRFTIGSSQLIDPNTVLKTRFSDDGKAAFL 865

Query: 241 IQHEWRPKSFFTISGEVD-TKAIEKSAKVGLALALKP 276
            Q  WRPKS  T+S E D TK    S K+GLALAL+P
Sbjct: 866 CQRAWRPKSLITLSAEYDSTKIFGSSTKLGLALALQP 976


>AV772563 
          Length = 477

 Score = 78.2 bits (191), Expect(2) = 5e-24
 Identities = 35/46 (76%), Positives = 42/46 (91%)
 Frame = -3

Query: 204 HRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASALIQHEWRPKS 249
           HRFS +ENTLTLGTQHALDPLT++KARVN+ G+A+A IQHEWR +S
Sbjct: 475 HRFSIHENTLTLGTQHALDPLTSVKARVNHLGQANAFIQHEWRAQS 338



 Score = 48.9 bits (115), Expect(2) = 5e-24
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = -1

Query: 247 PKSFFTISGEVDTKAIEKSAKVGLALALKP 276
           P  FFT+SGE DTKA+EKSAK+GL LAL+P
Sbjct: 345 PSHFFTLSGEGDTKALEKSAKIGLGLALQP 256


>BP028898 
          Length = 388

 Score = 62.4 bits (150), Expect = 8e-11
 Identities = 30/55 (54%), Positives = 38/55 (68%)
 Frame = -2

Query: 222 DPLTTLKARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
           D  T +KA++NN G   AL+QHE   KSF TISG  +TKA+EK+ K G +L LKP
Sbjct: 387 DSQTVVKAKLNNHGNLGALLQHELTHKSFLTISGAFETKALEKNPKFGFSLLLKP 223


>TC9298 UP|CAE02644 (CAE02644) Ornithine decarboxylase  , complete
          Length = 1522

 Score = 25.8 bits (55), Expect = 8.4
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 123 LTANPIVNFSGVIGTNVLALGADLTFDTKIGEL--TKSNAGLSFTKDDLIAALTLNDK 178
           L+ NPI + SGV G  V AL  +      I  +   K +   SF+  DL   + L DK
Sbjct: 128 LSLNPIFSASGVKGKRVTALTKECDMSHLIESIIADKPDMDSSFSVLDLGVVMELMDK 301


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,388,734
Number of Sequences: 28460
Number of extensions: 35394
Number of successful extensions: 118
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of query: 276
length of database: 4,897,600
effective HSP length: 89
effective length of query: 187
effective length of database: 2,364,660
effective search space: 442191420
effective search space used: 442191420
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)