BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0051a.1
(226 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV772515 70 4e-13
BP051017 36 0.006
BP036157 30 0.45
BP044806 29 0.76
BP035392 28 0.99
BP050427 27 2.9
AV779746 27 2.9
TC16890 27 3.8
TC17257 similar to UP|Q89CE1 (Q89CE1) Blr7856 protein, partial (5%) 27 3.8
TC16285 UP|RS23_FRAAN (P46297) 40S ribosomal protein S23 (S12), ... 26 4.9
BP068105 26 4.9
TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, part... 26 6.4
BP040733 26 6.4
BP038900 26 6.4
TC20211 homologue to UP|Q08150 (Q08150) GTP-binding protein 6, p... 26 6.4
TC12875 similar to UP|AAR07598 (AAR07598) Fiber protein Fb19 (Fr... 25 8.4
>AV772515
Length = 522
Score = 69.7 bits (169), Expect = 4e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = -2
Query: 181 VKRNTPPPILEDSNTPIKRRSDEGSITEVVGSNDAEMFKKIKFSK 225
+KRNTPP I+EDS P +RRSD+GSITEVVGS DAEM KKI+ SK
Sbjct: 506 IKRNTPPAIVEDSTHPTQRRSDDGSITEVVGSKDAEMLKKIQVSK 372
>BP051017
Length = 522
Score = 35.8 bits (81), Expect = 0.006
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -1
Query: 134 LVHKEFLFKVEGKNICGRWFNPAFNVLKICKDQQIISKFKTKTITKSVKRNTPP 187
+V E+LFKVE + G ++ +F V KIC + +I KFK + K+ P
Sbjct: 519 IVGNEYLFKVEKEFDHGVKYDGSFKVKKICDNIAVIEKFKDHNAVPTPKKKLDP 358
>BP036157
Length = 504
Score = 29.6 bits (65), Expect = 0.45
Identities = 16/54 (29%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Frame = +2
Query: 52 DCECNSAAYSDG-AQYYCEKCNKHVTP-TIRYKLLLNVADDTASATFTVFYREG 103
D +CN ++G +++C++C+K RY L L + D T T F G
Sbjct: 227 DRQCNKKVTNNGDGKWHCDRCDKSTDACDYRYILQLQIQDHTGVTWVTAFQEGG 388
>BP044806
Length = 538
Score = 28.9 bits (63), Expect = 0.76
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 149 CGRWFNPAFNVLKICKDQQIISKFKTKTITKSVKRNT--PPPILED-SNT 195
C R NP N ++C+ + I S K K +S+K T PPP D SNT
Sbjct: 291 CNRNPNPTPNRKRLCQCRSIKSTQKRKRQCRSIKHQTSIPPPNPSDPSNT 440
>BP035392
Length = 464
Score = 28.5 bits (62), Expect = 0.99
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +2
Query: 19 KSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCECNSAAYSDGAQYYCEKCNKHVTPT 78
K++ + + I+I++ I W Y C C+ Y C C +
Sbjct: 245 KTISQLSESDEEAIYIVHGGIVAALKNEAWTYPSCICHGELIVRTGVYECVTCQRFFYTM 424
Query: 79 I-RYKLLLNVAD 89
I RY++ + V D
Sbjct: 425 IRRYRVNVEVFD 460
>BP050427
Length = 508
Score = 26.9 bits (58), Expect = 2.9
Identities = 9/48 (18%), Positives = 21/48 (43%)
Frame = -1
Query: 19 KSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCECNSAAYSDGAQY 66
K L + ++ +F + A + + W+Y C C+ A ++ +
Sbjct: 202 KDLKELNETEEDGVFTVVARVTSLAEGEKWWYSACSCHKAVTTEDGTF 59
>AV779746
Length = 517
Score = 26.9 bits (58), Expect = 2.9
Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 4/55 (7%)
Frame = +1
Query: 163 CKDQQIISK----FKTKTITKSVKRNTPPPILEDSNTPIKRRSDEGSITEVVGSN 213
C+D I K K K++T S PP++ D PIK R+ + + G N
Sbjct: 79 CRDDVISKKNFIIIKQKSVTLSQSTTLHPPVIVDWLLPIK*RAKSYVLHQGKGEN 243
>TC16890
Length = 965
Score = 26.6 bits (57), Expect = 3.8
Identities = 16/80 (20%), Positives = 32/80 (40%)
Frame = +2
Query: 10 EVQEQCTILKSLPTKVQPQQRTIFIIYATIKKIESTNDWYYHDCECNSAAYSDGAQYYCE 69
E + TI + L + P ++ + I+ I + H C+ Y D + + E
Sbjct: 353 ETKRLATIREELESLADPMRKEVAIVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNE 532
Query: 70 KCNKHVTPTIRYKLLLNVAD 89
K + V R L++ ++
Sbjct: 533 KNREKVQLITRLMELVSESE 592
>TC17257 similar to UP|Q89CE1 (Q89CE1) Blr7856 protein, partial (5%)
Length = 614
Score = 26.6 bits (57), Expect = 3.8
Identities = 19/62 (30%), Positives = 25/62 (39%), Gaps = 1/62 (1%)
Frame = +1
Query: 53 CECNSAAYSDGAQYYCEKCNK-HVTPTIRYKLLLNVADDTASATFTVFYREGCYLMNKKG 111
C C++ DG+QY C + H TP NVA T A T+ L G
Sbjct: 100 CWCHNGKACDGSQYVCSAISSLHGTP--------NVASATRPAATTISRSVDALLWACLG 255
Query: 112 NE 113
N+
Sbjct: 256 NQ 261
>TC16285 UP|RS23_FRAAN (P46297) 40S ribosomal protein S23 (S12), complete
Length = 638
Score = 26.2 bits (56), Expect = 4.9
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -1
Query: 49 YYHDCECNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDTASATFTVFYREGCYLMN 108
Y+H+ + +S SDG + + N+H + + NV T+ + +GC L++
Sbjct: 434 YFHNLKSDSRNISDGVTFSAKTSNQH------FIIFFNVVQ------ATIIWHKGCNLLS 291
>BP068105
Length = 476
Score = 26.2 bits (56), Expect = 4.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 32 IFIIYATIKKIESTNDWYYHDCECNSA 58
IFI+ A I + + W+Y C C+ A
Sbjct: 377 IFIVMAKICGLVEGDKWWYSACSCHKA 457
>TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, partial (10%)
Length = 981
Score = 25.8 bits (55), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 179 KSVKRNTPPPILEDSNTPIKRR 200
KSVK+N PP+LE + + RR
Sbjct: 712 KSVKKN*KPPVLEKGSICLNRR 777
>BP040733
Length = 457
Score = 25.8 bits (55), Expect = 6.4
Identities = 11/45 (24%), Positives = 16/45 (35%)
Frame = +1
Query: 29 QRTIFIIYATIKKIESTNDWYYHDCECNSAAYSDGAQYYCEKCNK 73
Q I+I++ I W Y C C+ Y C C +
Sbjct: 313 QEAIYIVHGGIVAALKNEAWTYPSCICHGELIVRTGVYECVTCQR 447
>BP038900
Length = 471
Score = 25.8 bits (55), Expect = 6.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 60 YSDGAQYYCEKCNKHVTPTI 79
Y D +YC +C +H+ TI
Sbjct: 15 YQDNVMWYCNRCCRHMN*TI 74
>TC20211 homologue to UP|Q08150 (Q08150) GTP-binding protein 6, partial
(67%)
Length = 623
Score = 25.8 bits (55), Expect = 6.4
Identities = 19/60 (31%), Positives = 27/60 (44%)
Frame = -3
Query: 153 FNPAFNVLKICKDQQIISKFKTKTITKSVKRNTPPPILEDSNTPIKRRSDEGSITEVVGS 212
F P+ ++LK C + II K T + R+ P+L S P R D G + GS
Sbjct: 510 FEPSVDILKCCMSRDIIHKKCT*STPIVCTRDCTIPLLA-SGVPDLRLDDFGVNIQGAGS 334
>TC12875 similar to UP|AAR07598 (AAR07598) Fiber protein Fb19 (Fragment),
partial (64%)
Length = 668
Score = 25.4 bits (54), Expect = 8.4
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +1
Query: 83 LLLNVADDTASATFTVFYREGCY 105
LL N+A++ +S TF F+R CY
Sbjct: 358 LLHNIAENISSITFYHFHRYVCY 426
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,285,051
Number of Sequences: 28460
Number of extensions: 60218
Number of successful extensions: 274
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of query: 226
length of database: 4,897,600
effective HSP length: 87
effective length of query: 139
effective length of database: 2,421,580
effective search space: 336599620
effective search space used: 336599620
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0051a.1